Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0003895 Lotus japonicus HOM05D006689 ORTHO05D008349 6.1e-205 717.2 356 100.0
TPR.G23318 Trifolium pratense HOM05D006689 ORTHO05D008349 2.5e-158 562.4 357 80.1
Psat3g030240 Pisum sativum HOM05D006689 ORTHO05D008349 5.8e-155 551.2 356 78.1
Lalb_Chr01g0017911 Lupinus albus HOM05D006689 ORTHO05D008349 4.9e-146 521.5 345 74.5
Lalb_Chr20g0111471 Lupinus albus HOM05D006689 ORTHO05D008349 1.3e-141 506.9 307 78.5
arahy.Tifrunner.gnm1.ann1.YAPI8V Arachis hypogaea HOM05D006689 ORTHO05D008349 2.1e-128 463.0 337 68.5
Phvul.001G194040 Phaseolus vulgaris HOM05D006689 ORTHO05D008349 1.3e-127 460.3 309 76.7
Prupe.7G098300 Prunus persica HOM05D006689 ORTHO05D008349 1.4e-121 440.3 331 65.3
FvH4_6g19910 Fragaria vesca HOM05D006689 ORTHO05D008349 7.2e-121 438.0 298 68.5
MD14G1035800 Malus domestica HOM05D006689 ORTHO05D008349 3.5e-120 435.6 342 62.0
TAR633G1471 Trochodendron aralioides HOM05D006689 ORTHO05D008349 2.3e-119 433.0 328 64.0
PGR004G2039 Punica granatum HOM05D006689 ORTHO05D008349 6.7e-119 431.4 295 67.1
GSVIVG01033928001 Vitis vinifera HOM05D006689 ORTHO05D008349 2.5e-118 429.5 317 65.6
Actinidia32058 Actinidia chinensis HOM05D006689 ORTHO05D008349 1.6e-117 426.8 332 60.5
Aa31LG3G5030 Aethionema arabicum HOM05D006689 ORTHO05D008349 6.3e-117 424.9 344 60.2
Eucgr.A02606 Eucalyptus grandis HOM05D006689 ORTHO05D008349 6.3e-117 424.9 324 61.4
QL07p037495 Quercus lobata HOM05D006689 ORTHO05D008349 6.3e-117 424.9 331 63.4
CSS0035173 Camellia sinensis var. sinensis HOM05D006689 ORTHO05D008349 1.1e-116 424.1 306 64.4
Atru.chr8.1397 Acer truncatum HOM05D006689 ORTHO05D008349 3.1e-116 422.5 314 65.3
BcaB04g18654 Brassica carinata HOM05D006689 ORTHO05D008349 3.1e-116 422.5 338 59.2
arahy.Tifrunner.gnm1.ann1.ZIE5B9 Arachis hypogaea HOM05D006689 ORTHO05D008349 4.1e-116 422.2 337 64.1
Aqoxy4G02685 Aquilegia oxysepala HOM05D006689 ORTHO05D008349 1.5e-115 420.2 320 60.6
QL07p037513 Quercus lobata HOM05D006689 ORTHO05D008349 2.6e-115 419.5 303 65.0
Solyc01g007790.4 Solanum lycopersicum HOM05D006689 ORTHO05D008349 2.6e-115 419.5 336 61.0
Hma1.2p1_0064F.1_g034840 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 5.9e-115 418.3 301 64.1
Cc06_g06350 Coffea canephora HOM05D006689 ORTHO05D008349 7.7e-115 417.9 306 63.4
CANSAT64G2446 Cannabis sativa HOM05D006689 ORTHO05D008349 1.0e-114 417.5 301 66.1
TWI74G1155 Tripterygium wilfordii HOM05D006689 ORTHO05D008349 2.9e-114 416.0 313 62.9
C03p45070 Brassica napus HOM05D006689 ORTHO05D008349 3.8e-114 415.6 308 62.3
Medtr7g105800 Medicago truncatula HOM05D006689 ORTHO05D008349 5.0e-114 415.2 257 80.9
PSO384G4437 Papaver somniferum HOM05D006689 ORTHO05D008349 8.5e-114 414.5 330 58.5
Sp3g09850 Schrenkiella parvula HOM05D006689 ORTHO05D008349 8.5e-114 414.5 308 63.6
AL3G23170 Arabidopsis lyrata HOM05D006689 ORTHO05D008349 1.1e-113 414.1 310 62.3
Potri.016G072700 Populus trichocarpa HOM05D006689 ORTHO05D008349 1.1e-113 414.1 307 65.8
CARHR086170 Cardamine hirsuta HOM05D006689 ORTHO05D008349 1.9e-113 413.3 309 63.1
Oeu017715.1 Olea europaea HOM05D006689 ORTHO05D008349 1.9e-113 413.3 343 59.2
BcaC01g04099 Brassica carinata HOM05D006689 ORTHO05D008349 3.2e-113 412.5 307 62.2
Nn6g34760 Nelumbo nucifera HOM05D006689 ORTHO05D008349 3.2e-113 412.5 330 60.0
Duzib106G1273 Durio zibethinus HOM05D006689 ORTHO05D008349 5.5e-113 411.8 323 61.9
Thhalv10021180m.g Eutrema salsugineum HOM05D006689 ORTHO05D008349 7.2e-113 411.4 309 62.8
Sopen01g003330 Solanum pennellii HOM05D006689 ORTHO05D008349 7.2e-113 411.4 309 63.4
A03p37220 Brassica napus HOM05D006689 ORTHO05D008349 3.6e-112 409.1 320 59.7
FAN14G3242 Fragaria x ananassa HOM05D006689 ORTHO05D008349 6.1e-112 408.3 298 65.8
Cfa016668 Carpinus fangiana HOM05D006689 ORTHO05D008349 7.9e-112 407.9 319 61.8
CiPaw.09G018700 Carya illinoinensis HOM05D006689 ORTHO05D008349 3.0e-111 406.0 340 58.5
Carub.0003s1094 Capsella rubella HOM05D006689 ORTHO05D008349 5.1e-111 405.2 323 59.1
PSO339G4581 Papaver somniferum HOM05D006689 ORTHO05D008349 5.1e-111 405.2 301 60.5
FAN05G1672 Fragaria x ananassa HOM05D006689 ORTHO05D008349 3.3e-110 402.5 298 65.1
Sc07g0005680 Simmondsia chinensis HOM05D006689 ORTHO05D008349 3.3e-110 402.5 329 59.3
BraA03t12881Z Brassica rapa HOM05D006689 ORTHO05D008349 4.3e-110 402.1 299 62.9
FAN02G4476 Fragaria x ananassa HOM05D006689 ORTHO05D008349 5.7e-110 401.7 298 65.1
A05p37720 Brassica napus HOM05D006689 ORTHO05D008349 6.3e-109 398.3 323 59.1
C05p56320 Brassica napus HOM05D006689 ORTHO05D008349 2.4e-108 396.4 308 61.0
BraA05t22567Z Brassica rapa HOM05D006689 ORTHO05D008349 1.5e-107 393.7 308 60.1
CsaV3_6G040970 Cucumis sativus L. HOM05D006689 ORTHO05D008349 5.9e-107 391.7 295 59.3
AT3G11620 Arabidopsis thaliana HOM05D006689 ORTHO05D008349 7.7e-107 391.3 283 64.3
Gorai.009G398000 Gossypium raimondii HOM05D006689 ORTHO05D008349 1.0e-106 391.0 317 59.9
MD12G1034600 Malus domestica HOM05D006689 ORTHO05D008349 1.3e-106 390.6 285 67.0
BolC5t34296H Brassica oleracea HOM05D006689 ORTHO05D008349 1.9e-105 386.7 282 64.2
DCAR_013430 Daucus carota HOM05D006689 ORTHO05D008349 2.5e-105 386.3 344 55.5
Cpa.g.sc104.62 Carica papaya HOM05D006689 ORTHO05D008349 4.2e-105 385.6 323 58.5
BcaB06g25602 Brassica carinata HOM05D006689 ORTHO05D008349 2.7e-104 382.9 312 59.3
HPP92_023075 Vanilla planifolia HOM05D006689 ORTHO05D008349 1.1e-102 377.5 315 58.4
Ciclev10011965m.g Citrus clementina HOM05D006689 ORTHO05D008349 2.0e-102 376.7 328 55.8
Nitab4.5_0000665g0040 Nicotiana tabacum HOM05D006689 ORTHO05D008349 1.8e-100 370.2 312 57.1
BcaC05g29349 Brassica carinata HOM05D006689 ORTHO05D008349 7.0e-100 368.2 280 62.9
Zm00001eb362600 Zea mays HOM05D006689 ORTHO05D008349 9.1e-100 367.9 303 58.4
HanXRQChr13g0398201 Helianthus annuus HOM05D006689 ORTHO05D008349 2.6e-99 366.3 319 53.0
FAN09G0196 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.0e-98 364.4 390 49.7
SEGI_26711 Sequoiadendron giganteum HOM05D006689 ORTHO05D008349 2.5e-97 359.8 298 55.7
MBI17_g00993_MAGBIO Magnolia biondii HOM05D006689 ORTHO05D008349 1.2e-96 357.5 294 59.2
ClCG04G010350 Citrullus lanatus HOM05D006689 ORTHO05D008349 5.2e-95 352.1 295 56.6
Peaxi162Scf00419g00069 Petunia axillaris HOM05D006689 ORTHO05D008349 5.2e-95 352.1 316 56.0
Rhsim03G0067100 Rhododendron simsii HOM05D006689 ORTHO05D008349 5.2e-95 352.1 468 41.5
Haze_19679 Corylus avellana HOM05D006689 ORTHO05D008349 8.8e-95 351.3 357 52.7
ECA233G1524 Erigeron canadensis HOM05D006689 ORTHO05D008349 2.0e-94 350.1 278 56.8
Sed0011891 Sechium edule HOM05D006689 ORTHO05D008349 1.2e-91 340.9 258 60.5
FAN05G0890 Fragaria x ananassa HOM05D006689 ORTHO05D008349 1.6e-91 340.5 263 63.5
RcHm_v2.0_Chr3g0475311 Rosa chinensis HOM05D006689 ORTHO05D008349 4.2e-89 332.4 235 66.4
ATR0772G132 Amborella trichopoda HOM05D006689 ORTHO05D008349 8.0e-88 328.2 256 60.2
Lsat_1_v5_gn_6_35180 Lactuca sativa HOM05D006689 ORTHO05D008349 1.8e-84 317.0 279 52.7
Migut.L01819 Erythranthe guttata HOM05D006689 ORTHO05D008349 2.4e-84 316.6 240 60.8
Sabra16G0075500 Salix brachista HOM05D006689 ORTHO05D008349 1.7e-82 310.5 348 50.3
Gohir.D04G095300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 1.5e-81 307.4 249 59.4
Nitab4.5_0000020g0370 Nicotiana tabacum HOM05D006689 ORTHO05D008349 2.5e-81 306.6 232 61.2
Pp3c13_7330 Physcomitrium patens HOM05D006689 ORTHO05D008349 4.2e-81 305.8 330 44.8
Manes.09G048600 Manihot esculenta HOM05D006689 ORTHO05D008349 1.8e-79 300.4 231 62.8
SalBow5G2063 Salvia bowleyana HOM05D006689 ORTHO05D008349 1.1e-73 281.2 324 46.3
Hma1.2p1_0064F.1_g034850 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 1.0e-71 274.6 200 64.0
CAN.G574.36 Capsicum annuum HOM05D006689 ORTHO05D008349 2.3e-71 273.5 210 61.0
Thecc.05G100700 Theobroma cacao HOM05D006689 ORTHO05D008349 3.7e-69 266.2 204 62.3
Glyma.03G200300 Glycine max HOM05D006689 ORTHO05D008349 4.1e-68 262.7 151 84.1
SMO272G0021 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 1.2e-67 261.2 281 44.5
Glyma.19G197900 Glycine max HOM05D006689 ORTHO05D008349 2.1e-64 250.4 315 45.4
SMO165G0131 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 6.8e-63 245.4 304 39.8
CDE02G4301 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 6.8e-55 218.8 171 59.1
Hund19873 Selenicereus undatus HOM05D006689 ORTHO05D008349 6.8e-55 218.8 321 41.7
MELO3C024575.2 Cucumis melo HOM05D006689 ORTHO05D008349 4.4e-54 216.1 300 42.0
AUR62037035 Chenopodium quinoa HOM05D006689 ORTHO05D008349 6.6e-50 202.2 192 54.2
PGSC0003DMG400016416 Solanum tuberosum HOM05D006689 ORTHO05D008349 8.6e-50 201.8 146 63.7
AUR62006266 Chenopodium quinoa HOM05D006689 ORTHO05D008349 1.5e-49 201.1 192 54.7
unitig_22.g6018 Utricularia gibba HOM05D006689 ORTHO05D008349 3.1e-47 193.4 300 34.7
EL10Ac7g16816 Beta vulgaris HOM05D006689 ORTHO05D008349 2.0e-46 190.7 142 62.7
vmacro07460 Vaccinium macrocarpon HOM05D006689 ORTHO05D008349 4.4e-46 189.5 440 32.0
BolC3t16769H Brassica oleracea HOM05D006689 ORTHO05D008349 1.1e-41 174.9 126 65.1
Gohir.A04G061585 Gossypium hirsutum HOM05D006689 ORTHO05D008349 7.3e-41 172.2 145 57.2
Gohir.A04G061300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 1.5e-38 164.5 104 69.2
SGA_v2.0_scaffold184G40008 Striga asiatica HOM05D006689 ORTHO05D008349 6.6e-34 149.1 95 69.5
CDE02G1185 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 8.4e-29 132.1 100 62.0
Actinidia03903 Actinidia chinensis HOM05D006689 ORTHO05D008349 7.1e-28 129.0 216 40.7
COL.COLO4_29616 Corchorus olitorius HOM05D006689 ORTHO05D008349 4.6e-27 126.3 83 65.1
Aa31LG3G5020 Aethionema arabicum HOM05D006689 ORTHO05D008349 1.6e-24 117.9 77 66.2
Cre09.g388319 Chlamydomonas reinhardtii HOM05D006689 ORTHO05D008349 1.8e-23 114.4 334 27.8
Ah.08g210180 Amaranthus hybridus HOM05D006689 ORTHO05D008349 3.1e-23 113.6 75 68.0
MCO04G525 Micromonas commoda HOM05D006689 ORTHO05D008349 9.9e-22 108.6 252 27.0
PRCOL_00001274 Prasinoderma coloniale HOM05D006689 ORTHO05D008349 1.2e-19 101.7 325 28.3
RcHm_v2.0_Chr3g0475321 Rosa chinensis HOM05D006689 ORTHO05D008349 5.1e-18 96.3 69 63.8
Ca_12392_v3 Cicer arietinum L. HOM05D000112 ORTHO05D023238 4.6e-11 73.2 49 77.6
Sabra16G0075600 Salix brachista HOM05D006689 ORTHO05D008349 3.3e-09 67.0 41 68.3
Hma1.2p1_1624F.1_g294270 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 9.6e-09 65.5 46 60.9
arahy.Tifrunner.gnm1.ann1.HW4B1R Arachis hypogaea HOM05D006689 ORTHO05D008349 1.6e-08 64.7 52 55.8
Cfa021542 Carpinus fangiana HOM05D000750 ORTHO05D011662 2.4e-07 60.8 69 47.8
Hund19874 Selenicereus undatus HOM05D006689 ORTHO05D008349 7.6e-06 55.8 40 57.5


User provided reference genes

Program Settings