Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0003695 Lotus japonicus HOM05D008360 ORTHO05D010532 2.4e-23 111.3 55 100.0
Medtr7g090260 Medicago truncatula HOM05D008360 ORTHO05D010532 5.7e-17 90.1 47 91.5
Phvul.001G125600 Phaseolus vulgaris HOM05D008360 ORTHO05D010532 2.1e-16 88.2 47 85.1
arahy.Tifrunner.gnm1.ann1.LHUB84 Arachis hypogaea HOM05D008360 ORTHO05D010532 3.1e-15 84.3 48 79.2
COL.COLO4_37957 Corchorus olitorius HOM05D008360 ORTHO05D010532 5.0e-13 77.0 47 74.5
Duzib093G1186 Durio zibethinus HOM05D008360 ORTHO05D010532 8.4e-13 76.3 47 72.3
Dinv34381 Davidia involucrata HOM05D008360 ORTHO05D010532 4.2e-12 73.9 47 68.1
RcHm_v2.0_Chr3g0476891 Rosa chinensis HOM05D008360 ORTHO05D010532 4.2e-12 73.9 47 66.0
CiPaw.09G045700 Carya illinoinensis HOM05D008360 ORTHO05D010532 5.5e-12 73.6 47 68.1
Duzib106G1984 Durio zibethinus HOM05D008360 ORTHO05D010532 5.5e-12 73.6 47 70.2
Lalb_Chr25g0286871 Lupinus albus HOM05D008360 ORTHO05D010532 5.5e-12 73.6 46 76.1
Potri.016G038300 Populus trichocarpa HOM05D008360 ORTHO05D010532 7.1e-12 73.2 47 66.0
Thecc.05G140600 Theobroma cacao HOM05D008360 ORTHO05D010532 7.1e-12 73.2 47 70.2
CAN.G1237.40 Capsicum annuum HOM05D008360 ORTHO05D010532 1.6e-11 72.0 47 66.0
Gohir.A09G118500 Gossypium hirsutum HOM05D008360 ORTHO05D010532 1.6e-11 72.0 47 72.3
Gohir.D09G115400 Gossypium hirsutum HOM05D008360 ORTHO05D010532 1.6e-11 72.0 47 72.3
Gorai.006G133100 Gossypium raimondii HOM05D008360 ORTHO05D010532 1.6e-11 72.0 47 72.3
Hma1.2p1_1048F.1_g251690 Hydrangea macrophylla HOM05D008360 ORTHO05D010532 1.6e-11 72.0 47 63.8
Nitab4.5_0002162g0190 Nicotiana tabacum HOM05D008360 ORTHO05D010532 1.6e-11 72.0 39 74.4
Solyc04g040000.2 Solanum lycopersicum HOM05D008360 ORTHO05D010532 2.7e-11 71.2 46 65.2
Manes.09G007500 Manihot esculenta HOM05D008360 ORTHO05D010532 4.6e-11 70.5 47 61.7
RcHm_v2.0_Chr3g0476991 Rosa chinensis HOM05D008360 ORTHO05D010532 4.6e-11 70.5 45 66.7
FAN14G5043 Fragaria x ananassa HOM05D008360 ORTHO05D010532 6.1e-11 70.1 49 57.1
Lalb_Chr20g0110161 Lupinus albus HOM05D008360 ORTHO05D010532 6.1e-11 70.1 48 72.9
AUR62031993 Chenopodium quinoa HOM05D000009 ORTHO05D000008 1.3e-10 68.9 46 65.2
FAN09G2365 Fragaria x ananassa HOM05D008360 ORTHO05D010532 1.3e-10 68.9 49 55.1
Potri.006G041600 Populus trichocarpa HOM05D008360 ORTHO05D010532 3.0e-10 67.8 47 61.7
Prupe.7G043000 Prunus persica HOM05D008360 ORTHO05D010532 3.0e-10 67.8 47 59.6
ECA248G1201 Erigeron canadensis HOM05D001008 ORTHO05D009098 3.9e-10 67.4 39 66.7
Hund24629 Selenicereus undatus HOM05D008360 ORTHO05D010532 3.9e-10 67.4 48 56.2
Aa31LG10G11990 Aethionema arabicum HOM05D008360 ORTHO05D010532 5.1e-10 67.0 47 59.6
Manes.08G057500 Manihot esculenta HOM05D008360 ORTHO05D010532 5.1e-10 67.0 47 57.4
unitig_8.g3490 Utricularia gibba HOM05D008360 ORTHO05D010532 5.1e-10 67.0 48 60.4
Cc06_g18840 Coffea canephora HOM05D008360 ORTHO05D010532 1.1e-09 65.9 47 57.4
Thhalv10006358m.g Eutrema salsugineum HOM05D008360 ORTHO05D010532 1.5e-09 65.5 47 59.6
Carub.0005s2387 Capsella rubella HOM05D008360 ORTHO05D010532 2.5e-09 64.7 47 55.3
CARHR167260 Cardamine hirsuta HOM05D008360 ORTHO05D010532 2.5e-09 64.7 47 55.3
A09p49990 Brassica napus HOM05D008360 ORTHO05D010532 3.3e-09 64.3 47 57.4
C08p32400 Brassica napus HOM05D008360 ORTHO05D010532 3.3e-09 64.3 47 57.4
BolC8t50854H Brassica oleracea HOM05D008360 ORTHO05D010532 3.3e-09 64.3 47 57.4
BraA09t40449Z Brassica rapa HOM05D008360 ORTHO05D010532 3.3e-09 64.3 47 57.4
AL5G38550 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 4.3e-09 63.9 47 55.3
AT3G57062 Arabidopsis thaliana HOM05D008360 ORTHO05D010532 4.3e-09 63.9 47 55.3
THA.LOC104824413 Tarenaya hassleriana HOM05D008360 ORTHO05D010532 4.3e-09 63.9 47 59.6
Migut.J01675 Erythranthe guttata HOM05D008360 ORTHO05D010532 5.7e-09 63.5 48 56.2
Sabra06G0028300 Salix brachista HOM05D008360 ORTHO05D010532 5.7e-09 63.5 48 56.2
CSS0042665 Camellia sinensis var. sinensis HOM05D008360 ORTHO05D010532 1.3e-08 62.4 48 54.2
Migut.K00128 Erythranthe guttata HOM05D008360 ORTHO05D010532 1.4e-07 58.9 45 51.1
BcaC02g12894 Brassica carinata HOM05D008360 ORTHO05D010532 1.8e-07 58.5 47 57.4
AL4G39310 Arabidopsis lyrata HOM05D008360 ORTHO05D010532 4.1e-07 57.4 47 53.2
Actinidia17687 Actinidia chinensis HOM05D008360 ORTHO05D010532 5.3e-07 57.0 39 64.1
PSO384G3670 Papaver somniferum HOM05D008360 ORTHO05D010532 5.3e-07 57.0 36 63.9
Carub.0004s2362 Capsella rubella HOM05D008360 ORTHO05D010532 5.9e-06 53.5 46 54.3
RcHm_v2.0_Chr3g0477841 Rosa chinensis HOM05D008360 ORTHO05D010532 5.9e-06 53.5 29 72.4
vmacro07812 Vaccinium macrocarpon HOM05D006707 ORTHO05D008243 1.0e-05 52.8 37 62.2


User provided reference genes

Program Settings