Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0003551 Lotus japonicus HOM05D006598 ORTHO05D008132 3.1e-198 694.9 341 100.0
Medtr3g111840 Medicago truncatula HOM05D006598 ORTHO05D008132 2.2e-167 592.4 338 86.7
Phvul.009G057800 Phaseolus vulgaris HOM05D006598 ORTHO05D008132 4.2e-163 578.2 347 83.3
Psat5g017160 Pisum sativum HOM05D006598 ORTHO05D008132 9.4e-163 577.0 347 82.7
Ca_15516_v3 Cicer arietinum L. HOM05D006598 ORTHO05D008132 2.7e-162 575.5 324 87.0
TPR.G12344 Trifolium pratense HOM05D006598 ORTHO05D008132 1.0e-161 573.5 338 84.0
Glyma.06G032100 Glycine max HOM05D006598 ORTHO05D008132 9.8e-160 567.0 331 83.7
VMungo1309G1899 Vigna mungo HOM05D006598 ORTHO05D008132 1.4e-158 563.1 347 81.3
Glyma.04G032000 Glycine max HOM05D006598 ORTHO05D008132 1.2e-157 560.1 331 83.1
arahy.Tifrunner.gnm1.ann1.9Y7K4V Arachis hypogaea HOM05D006598 ORTHO05D008132 1.3e-151 540.0 319 81.8
arahy.Tifrunner.gnm1.ann1.KF7WGB Arachis hypogaea HOM05D006598 ORTHO05D008132 2.2e-151 539.3 319 81.8
Lalb_Chr11g0062331 Lupinus albus HOM05D006598 ORTHO05D008132 2.9e-143 512.3 346 74.9
Dinv36084 Davidia involucrata HOM05D006598 ORTHO05D008132 1.2e-141 506.9 335 74.0
QL02p008626 Quercus lobata HOM05D006598 ORTHO05D008132 1.3e-140 503.4 335 73.4
Prupe.1G379200 Prunus persica HOM05D006598 ORTHO05D008132 6.6e-140 501.1 334 73.1
CSS0023084 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 8.1e-138 494.2 334 71.9
Cfa018154 Carpinus fangiana HOM05D006598 ORTHO05D008132 2.3e-137 492.7 320 73.4
Atru.chr13.478 Acer truncatum HOM05D006598 ORTHO05D008132 6.8e-137 491.1 335 71.6
CiPaw.15G078300 Carya illinoinensis HOM05D006598 ORTHO05D008132 1.2e-136 490.3 334 71.6
FvH4_2g39790 Fragaria vesca HOM05D006598 ORTHO05D008132 2.0e-136 489.6 334 71.6
Haze_17965 Corylus avellana HOM05D006598 ORTHO05D008132 3.4e-136 488.8 320 72.8
FAN15G1256 Fragaria x ananassa HOM05D006598 ORTHO05D008132 3.4e-136 488.8 334 71.6
Actinidia38007 Actinidia chinensis HOM05D006598 ORTHO05D008132 9.8e-136 487.3 333 71.5
Potri.002G260300 Populus trichocarpa HOM05D006598 ORTHO05D008132 1.3e-135 486.9 334 72.2
FAN27G1472 Fragaria x ananassa HOM05D006598 ORTHO05D008132 2.9e-135 485.7 320 72.5
FAN20G2142 Fragaria x ananassa HOM05D006598 ORTHO05D008132 4.9e-135 485.0 334 71.0
Dinv39426 Davidia involucrata HOM05D006598 ORTHO05D008132 6.4e-135 484.6 334 71.6
CANSAT25G2965 Cannabis sativa HOM05D006598 ORTHO05D008132 8.3e-135 484.2 320 73.1
Cpa.g.sc36.79 Carica papaya HOM05D006598 ORTHO05D008132 9.2e-134 480.7 319 73.7
GSVIVG01009711001 Vitis vinifera HOM05D006598 ORTHO05D008132 1.6e-133 479.9 332 71.1
CSS0013932 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 2.1e-133 479.6 313 74.1
Sabra02G0198100 Salix brachista HOM05D006598 ORTHO05D008132 3.5e-133 478.8 334 71.6
Ciclev10001322m.g Citrus clementina HOM05D006598 ORTHO05D008132 4.6e-133 478.4 335 70.4
TAR625G1490 Trochodendron aralioides HOM05D006598 ORTHO05D008132 1.0e-132 477.2 334 71.3
Duzib116G0116 Durio zibethinus HOM05D006598 ORTHO05D008132 2.1e-130 469.5 319 72.4
Rhsim07G0239600 Rhododendron simsii HOM05D006598 ORTHO05D008132 2.8e-130 469.2 320 70.6
Lj4A39T66 Lonicera japonica HOM05D006598 ORTHO05D008132 3.6e-130 468.8 329 71.7
PGSC0003DMG400003679 Solanum tuberosum HOM05D006598 ORTHO05D008132 3.6e-130 468.8 330 67.9
COL.COLO4_26313 Corchorus olitorius HOM05D006598 ORTHO05D008132 6.2e-130 468.0 321 71.7
Manes.18G026900 Manihot esculenta HOM05D006598 ORTHO05D008132 8.1e-130 467.6 335 69.3
Sed0027447 Sechium edule HOM05D006598 ORTHO05D008132 8.1e-130 467.6 326 70.9
PSO541G3348 Papaver somniferum HOM05D006598 ORTHO05D008132 1.1e-129 467.2 334 68.6
CAN.G1226.16 Capsicum annuum HOM05D006598 ORTHO05D008132 3.1e-129 465.7 327 67.9
THA.LOC104806941 Tarenaya hassleriana HOM05D006598 ORTHO05D008132 3.1e-129 465.7 319 69.6
Cc10_g02850 Coffea canephora HOM05D006598 ORTHO05D008132 2.0e-128 463.0 320 69.4
vmacro04528 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 2.6e-128 462.6 319 70.5
Actinidia15332 Actinidia chinensis HOM05D006598 ORTHO05D008132 4.4e-128 461.8 334 68.0
PSO675G7094 Papaver somniferum HOM05D006598 ORTHO05D008132 1.3e-127 460.3 333 67.9
Solyc04g080380.3 Solanum lycopersicum HOM05D006598 ORTHO05D008132 1.3e-127 460.3 330 67.0
Sopen04g033970 Solanum pennellii HOM05D006598 ORTHO05D008132 1.3e-127 460.3 330 67.3
vmacro21641 Vaccinium macrocarpon HOM05D006598 ORTHO05D008132 1.7e-127 459.9 336 67.3
Nitab4.5_0010510g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 4.9e-127 458.4 327 68.2
Sc02g0006160 Simmondsia chinensis HOM05D006598 ORTHO05D008132 6.4e-127 458.0 317 69.7
Aqoxy6G01111 Aquilegia oxysepala HOM05D006598 ORTHO05D008132 1.9e-126 456.4 328 67.7
Rhsim06G0033600 Rhododendron simsii HOM05D006598 ORTHO05D008132 3.2e-126 455.7 335 66.0
MSTRG.25174 Avicennia marina HOM05D006598 ORTHO05D008132 4.1e-126 455.3 334 68.9
ECA232G3558 Erigeron canadensis HOM05D006598 ORTHO05D008132 1.2e-125 453.8 326 67.5
Nitab4.5_0006280g0060 Nicotiana tabacum HOM05D006598 ORTHO05D008132 1.6e-125 453.4 327 67.6
Eucgr.F01894 Eucalyptus grandis HOM05D006598 ORTHO05D008132 4.6e-125 451.8 332 67.5
Migut.C00732 Erythranthe guttata HOM05D006598 ORTHO05D008132 6.0e-125 451.4 320 68.8
Aa31LG9G12810 Aethionema arabicum HOM05D006598 ORTHO05D008132 6.6e-124 448.0 319 67.7
PGR031G2630 Punica granatum HOM05D006598 ORTHO05D008132 8.6e-124 447.6 335 66.6
CARHR181720 Cardamine hirsuta HOM05D006598 ORTHO05D008132 5.6e-123 444.9 317 66.6
SalBow7G0748 Salvia bowleyana HOM05D006598 ORTHO05D008132 5.6e-123 444.9 320 68.4
TWI36G0987 Tripterygium wilfordii HOM05D006598 ORTHO05D008132 5.6e-123 444.9 335 66.0
Thhalv10003240m.g Eutrema salsugineum HOM05D006598 ORTHO05D008132 7.3e-123 444.5 317 67.5
AL8G18360 Arabidopsis lyrata HOM05D006598 ORTHO05D008132 1.6e-122 443.4 319 67.7
MBI16_g31005_MAGBIO Magnolia biondii HOM05D006598 ORTHO05D008132 2.8e-122 442.6 319 67.4
Sp2g07390 Schrenkiella parvula HOM05D006598 ORTHO05D008132 3.1e-121 439.1 317 66.9
A06p48250 Brassica napus HOM05D006598 ORTHO05D008132 6.8e-121 438.0 317 66.2
BraA06t27693Z Brassica rapa HOM05D006598 ORTHO05D008132 6.8e-121 438.0 317 66.2
Lsat_1_v5_gn_4_119301 Lactuca sativa HOM05D006598 ORTHO05D008132 8.9e-121 437.6 329 66.3
BcaC02g10811 Brassica carinata HOM05D006598 ORTHO05D008132 1.5e-120 436.8 317 65.9
BcaC06g31749 Brassica carinata HOM05D006598 ORTHO05D008132 1.5e-120 436.8 317 65.9
C04p24910 Brassica napus HOM05D006598 ORTHO05D008132 1.5e-120 436.8 317 65.9
BolC4t23991H Brassica oleracea HOM05D006598 ORTHO05D008132 1.5e-120 436.8 317 65.9
Carub.0008s0618 Capsella rubella HOM05D006598 ORTHO05D008132 2.0e-120 436.4 320 66.6
Hund26575 Selenicereus undatus HOM05D006598 ORTHO05D008132 1.4e-118 430.3 309 67.3
AT5G42760 Arabidopsis thaliana HOM05D006598 ORTHO05D008132 2.4e-118 429.5 310 67.1
Thecc.08G027000 Theobroma cacao HOM05D006598 ORTHO05D008132 4.2e-118 428.7 319 68.3
TAR628G1208 Trochodendron aralioides HOM05D006598 ORTHO05D008132 4.6e-117 425.2 294 69.4
HPP92_018806 Vanilla planifolia HOM05D006598 ORTHO05D008132 6.0e-117 424.9 307 66.4
SGA_v2.0_scaffold54G19518 Striga asiatica HOM05D006598 ORTHO05D008132 1.3e-116 423.7 330 64.2
AUR62035446 Chenopodium quinoa HOM05D006598 ORTHO05D008132 1.8e-113 413.3 320 65.0
Ah.11g043150 Amaranthus hybridus HOM05D006598 ORTHO05D008132 9.0e-113 411.0 328 62.5
ATR0810G155 Amborella trichopoda HOM05D006598 ORTHO05D008132 9.9e-112 407.5 317 61.8
CDE04G2166 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 4.2e-110 402.1 314 63.4
Oeu049953.1 Olea europaea HOM05D006598 ORTHO05D008132 2.9e-103 379.4 335 59.1
Nitab4.5_0005730g0030 Nicotiana tabacum HOM05D006598 ORTHO05D008132 2.4e-102 376.3 329 58.7
Os03g0775000 Oryza sativa ssp. japonica HOM05D006598 ORTHO05D008132 1.8e-97 360.1 314 57.6
Zm00001eb059150 Zea mays HOM05D006598 ORTHO05D008132 2.0e-96 356.7 309 57.3
SEGI_39292 Sequoiadendron giganteum HOM05D006598 ORTHO05D008132 1.6e-90 337.0 312 56.7
CDE06G0448 Ceratophyllum demersum HOM05D006598 ORTHO05D008132 2.4e-89 333.2 273 62.3
Pp3c8_2950 Physcomitrium patens HOM05D006598 ORTHO05D008132 8.7e-84 314.7 320 52.8
Pp3c4_6590 Physcomitrium patens HOM05D006598 ORTHO05D008132 4.8e-82 308.9 307 53.7
TAR381G1379 Trochodendron aralioides HOM05D006598 ORTHO05D008132 1.4e-81 307.4 205 70.2
AagrBONN_evm.TU.Sc2ySwM_228.3129 Anthoceros agrestis HOM05D006598 ORTHO05D008132 5.0e-79 298.9 308 51.0
HPP92_018704 Vanilla planifolia HOM05D006598 ORTHO05D008132 4.2e-78 295.8 229 64.2
Nitab4.5_0001091g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 5.7e-75 285.4 203 66.5
Nn5g29606 Nelumbo nucifera HOM05D006598 ORTHO05D008132 5.3e-73 278.9 216 66.2
CSS0023478 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 1.7e-66 257.3 157 76.4
HanXRQChr16g0508491 Helianthus annuus HOM05D006598 ORTHO05D008132 1.3e-63 247.7 203 61.6
HPP92_018786 Vanilla planifolia HOM05D006598 ORTHO05D008132 2.1e-61 240.4 166 68.1
unitig_46.g17936 Utricularia gibba HOM05D006598 ORTHO05D008132 4.4e-59 232.6 177 62.7
FAN20G3016 Fragaria x ananassa HOM05D006598 ORTHO05D008132 7.0e-57 225.3 132 77.3
Actinidia29823 Actinidia chinensis HOM05D006598 ORTHO05D008132 6.1e-53 212.2 159 64.2
Pp3c12_23400 Physcomitrium patens HOM05D006598 ORTHO05D008132 8.8e-52 208.4 285 45.3
AUR62039547 Chenopodium quinoa HOM05D006598 ORTHO05D008132 6.5e-47 192.2 244 48.0
HPP92_018785 Vanilla planifolia HOM05D006598 ORTHO05D008132 2.6e-43 180.3 124 70.2
TAR381G0844 Trochodendron aralioides HOM05D006598 ORTHO05D008132 3.1e-41 173.3 135 69.6
MD15G1027400 Malus domestica HOM05D006598 ORTHO05D008132 4.5e-40 169.5 88 84.1
Actinidia22543 Actinidia chinensis HOM05D006598 ORTHO05D008132 1.4e-36 157.9 145 59.3
CSS0032599 Camellia sinensis var. sinensis HOM05D006598 ORTHO05D008132 3.5e-24 116.7 127 52.8
Actinidia29824 Actinidia chinensis HOM05D006598 ORTHO05D008132 8.6e-23 112.1 136 47.8
MCO09G151 Micromonas commoda HOM05D006598 ORTHO05D008132 1.4e-17 94.7 194 35.6
Nitab4.5_0000457g0120 Nicotiana tabacum HOM05D006598 ORTHO05D008132 1.4e-17 94.7 72 61.1
HanXRQChr09g0268921 Helianthus annuus HOM05D006598 ORTHO05D008132 6.2e-13 79.3 88 50.0
CBR_g22328 Chara braunii HOM05D006598 ORTHO05D008132 3.4e-11 73.6 117 36.8
Cre17.g737650 Chlamydomonas reinhardtii HOM05D038115 ORTHO05D008132 5.4e-09 66.2 161 30.4
MCO05G745 Micromonas commoda HOM05D006598 ORTHO05D269324 1.5e-06 58.2 175 30.9


User provided reference genes

Program Settings