Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 6.7e-81 303.9 148 100.0
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 1.6e-74 282.7 148 91.9
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 6.1e-74 280.8 148 91.9
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 1.3e-71 273.1 148 88.5
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 1.1e-70 270.0 148 87.2
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 1.4e-70 269.6 148 87.2
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 1.8e-70 269.2 148 85.8
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 1.8e-70 269.2 148 85.8
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 9.4e-67 256.9 148 85.8
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 1.2e-66 256.5 148 87.2
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 6.1e-66 254.2 148 87.2
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 8.0e-66 253.8 148 81.1
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 2.0e-64 249.2 148 77.7
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 7.4e-64 247.3 148 83.8
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 7.4e-64 247.3 148 83.8
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 4.8e-63 244.6 148 77.7
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 4.8e-63 244.6 148 79.7
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 3.5e-61 238.4 148 77.7
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 7.7e-61 237.3 148 75.7
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 1.0e-60 236.9 148 75.7
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 2.2e-60 235.7 148 75.0
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 6.5e-60 234.2 148 71.6
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 6.5e-60 234.2 148 71.6
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 8.5e-60 233.8 148 73.0
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 8.5e-60 233.8 148 75.0
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 1.9e-59 232.6 148 73.6
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 3.2e-59 231.9 148 74.3
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 9.4e-59 230.3 148 74.3
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 1.6e-58 229.6 145 73.8
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 3.6e-58 228.4 148 73.6
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 3.6e-58 228.4 148 69.6
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 4.7e-58 228.0 148 72.3
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 4.7e-58 228.0 144 74.3
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 4.7e-58 228.0 145 73.8
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 4.7e-58 228.0 147 71.4
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 1.4e-57 226.5 148 73.6
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 1.4e-57 226.5 148 71.6
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 1.8e-57 226.1 148 70.3
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 5.2e-57 224.6 148 73.6
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 8.8e-57 223.8 146 69.2
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 1.2e-56 223.4 148 72.3
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 1.2e-56 223.4 148 71.6
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 1.5e-56 223.0 168 65.5
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 4.4e-56 221.5 172 63.4
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 5.7e-56 221.1 172 63.4
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 5.7e-56 221.1 154 71.4
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 9.7e-56 220.3 136 76.5
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 9.7e-56 220.3 148 70.9
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 1.3e-55 219.9 148 68.9
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 1.7e-55 219.5 148 69.6
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 2.8e-55 218.8 148 70.9
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 6.3e-55 217.6 148 68.2
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 8.2e-55 217.2 149 70.5
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 1.1e-54 216.9 213 54.5
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 1.4e-54 216.5 148 67.6
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 1.4e-54 216.5 146 67.1
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 1.8e-54 216.1 148 68.9
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 2.4e-54 215.7 148 68.2
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 2.4e-54 215.7 148 68.9
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 5.3e-54 214.5 186 60.2
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 5.3e-54 214.5 148 67.6
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 9.1e-54 213.8 149 70.5
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 1.2e-53 213.4 148 67.6
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 1.2e-53 213.4 171 63.2
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 4.5e-53 211.5 148 66.9
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 4.5e-53 211.5 146 65.8
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 5.9e-53 211.1 149 65.8
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 7.7e-53 210.7 146 67.8
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 1.3e-52 209.9 148 66.9
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 2.2e-52 209.1 149 66.4
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 2.2e-52 209.1 149 66.4
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 2.9e-52 208.8 146 66.4
Sabra03G0073500 Salix brachista HOM05D007311 ORTHO05D009011 5.0e-52 208.0 149 65.8
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 8.5e-52 207.2 146 65.8
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 2.5e-51 205.7 148 64.2
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 4.2e-51 204.9 165 62.4
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 5.5e-51 204.5 149 65.1
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 9.4e-51 203.8 153 64.7
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 1.2e-50 203.4 149 63.1
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 1.6e-50 203.0 146 63.7
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 2.1e-50 202.6 151 64.2
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 4.7e-50 201.4 136 70.6
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 1.0e-49 200.3 146 63.0
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 2.3e-49 199.1 148 64.2
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 6.8e-49 197.6 149 63.1
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 3.4e-48 195.3 130 70.8
QL12p002612 Quercus lobata HOM05D007311 ORTHO05D009011 1.7e-47 193.0 147 66.0
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 1.4e-46 189.9 144 61.8
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 3.1e-46 188.7 120 72.5
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 9.1e-46 187.2 148 58.8
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 1.6e-45 186.4 127 70.1
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 2.7e-45 185.7 174 52.9
CSS0046759 Camellia sinensis var. sinensis HOM05D007311 ORTHO05D009011 9.5e-43 177.2 111 78.4
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 2.3e-41 172.6 145 55.2
Dinv37446 Davidia involucrata HOM05D007311 ORTHO05D009011 1.0e-36 157.1 104 72.1
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 1.1e-35 153.7 119 57.1
TWI60G1527 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 4.0e-33 145.2 148 51.4
Ah.01g011070 Amaranthus hybridus HOM05D007311 ORTHO05D009011 7.5e-32 141.0 104 68.3
Sopen08g023700 Solanum pennellii HOM05D007311 ORTHO05D009011 1.3e-28 130.2 94 63.8
SEGI_31752 Sequoiadendron giganteum HOM05D007311 ORTHO05D009011 8.9e-25 117.5 101 54.5
Eucgr.E01790 Eucalyptus grandis HOM05D007311 ORTHO05D009011 2.6e-24 115.9 82 67.1
AagrBONN_evm.TU.Sc2ySwM_228.4293 Anthoceros agrestis HOM05D007311 ORTHO05D009011 2.9e-23 112.5 135 38.5
Ciclev10003443m.g Citrus clementina HOM05D007311 ORTHO05D009011 9.5e-19 97.4 77 59.7
Eucgr.E01869 Eucalyptus grandis HOM05D007311 ORTHO05D009011 9.5e-19 97.4 66 71.2
BcaC02g07636 Brassica carinata HOM05D007311 ORTHO05D009011 1.2e-18 97.1 103 53.4
Rhsim07G0141400 Rhododendron simsii HOM05D000351 ORTHO05D000250 2.3e-17 92.8 122 46.7
SMO139G0010 Selaginella moellendorffii HOM05D007311 ORTHO05D009011 2.0e-16 89.7 151 34.4
SalBow8G5581 Salvia bowleyana HOM05D007311 ORTHO05D009011 7.5e-16 87.8 65 64.6
SalBow1G6002 Salvia bowleyana HOM05D007311 ORTHO05D009011 9.9e-16 87.4 73 61.6
Medtr5g045430 Medicago truncatula HOM05D007311 ORTHO05D009011 1.3e-15 87.0 66 71.2
FAN13G1634 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.7e-15 86.7 45 77.8
Mapoly0040s0015 Marchantia polymorpha HOM05D007311 ORTHO05D009011 3.2e-14 82.4 138 31.9
Medtr2g084355 Medicago truncatula HOM05D003237 ORTHO05D003631 3.9e-12 75.5 44 88.6
Zm00001eb347540 Zea mays HOM05D007311 ORTHO05D009011 9.5e-11 70.9 66 48.5
Ca_12103_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 6.2e-10 68.2 38 86.8
Eucgr.E01843 Eucalyptus grandis HOM05D007311 ORTHO05D009011 3.2e-06 55.8 47 48.9


User provided reference genes

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