Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0003388 Lotus japonicus HOM05D007120 ORTHO05D008881 7.8e-24 112.8 53 100.0
Phvul.009G043000 Phaseolus vulgaris HOM05D007120 ORTHO05D008881 2.4e-20 101.3 53 86.8
Glyma.06G141900 Glycine max HOM05D007120 ORTHO05D008881 3.4e-19 97.4 53 81.1
Lalb_Chr23g0272151 Lupinus albus HOM05D007120 ORTHO05D008881 1.7e-18 95.1 53 81.1
Glyma.04G223400 Glycine max HOM05D007120 ORTHO05D008881 2.2e-18 94.7 53 79.2
Lalb_Chr11g0067731 Lupinus albus HOM05D007120 ORTHO05D008881 2.2e-18 94.7 53 81.1
Lalb_Chr08g0239241 Lupinus albus HOM05D007120 ORTHO05D008881 1.1e-17 92.4 53 77.4
Medtr3g093810 Medicago truncatula HOM05D007120 ORTHO05D008881 7.1e-17 89.7 53 79.2
Atru.chr12.199 Acer truncatum HOM05D007120 ORTHO05D008881 1.2e-11 72.4 44 65.9
Migut.F00570 Erythranthe guttata HOM05D007120 ORTHO05D008881 2.0e-11 71.6 45 73.3
CiPaw.14G049800 Carya illinoinensis HOM05D007120 ORTHO05D008881 2.6e-11 71.2 50 62.0
Aqoxy4G03269 Aquilegia oxysepala HOM05D007120 ORTHO05D008881 3.4e-11 70.9 45 66.7
Gohir.D06G187000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 5.8e-11 70.1 42 73.8
Gorai.010G219300 Gossypium raimondii HOM05D007120 ORTHO05D008881 5.8e-11 70.1 42 73.8
Cfa011840 Carpinus fangiana HOM05D007120 ORTHO05D008881 7.6e-11 69.7 47 63.8
Hma1.2p1_0264F.1_g105975 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 9.9e-11 69.3 47 66.0
Hma1.2p1_1805F.1_g303200 Hydrangea macrophylla HOM05D007120 ORTHO05D008881 9.9e-11 69.3 47 66.0
Gohir.A06G180100 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.3e-10 68.9 42 71.4
Gorai.013G008400 Gossypium raimondii HOM05D007120 ORTHO05D008881 1.3e-10 68.9 50 62.0
Thhalv10017507m.g Eutrema salsugineum HOM05D007120 ORTHO05D008881 2.2e-10 68.2 48 62.5
Nitab4.5_0000171g0210 Nicotiana tabacum HOM05D007120 ORTHO05D008881 2.9e-10 67.8 48 64.6
Peaxi162Scf00073g02342 Petunia axillaris HOM05D007120 ORTHO05D008881 2.9e-10 67.8 48 64.6
RcHm_v2.0_Chr1g0372461 Rosa chinensis HOM05D007120 ORTHO05D008881 2.9e-10 67.8 48 60.4
RcHm_v2.0_Chr7g0235281 Rosa chinensis HOM05D007120 ORTHO05D008881 2.9e-10 67.8 48 60.4
RcHm_v2.0_Chr7g0235311 Rosa chinensis HOM05D007120 ORTHO05D008881 2.9e-10 67.8 48 60.4
TAR369G0939 Trochodendron aralioides HOM05D007120 ORTHO05D008881 2.9e-10 67.8 45 64.4
GSVIVG01032659001 Vitis vinifera HOM05D007120 ORTHO05D008881 2.9e-10 67.8 50 62.0
DCAR_014662 Daucus carota HOM05D007120 ORTHO05D008881 3.8e-10 67.4 42 66.7
MD07G1234900 Malus domestica HOM05D007120 ORTHO05D008881 3.8e-10 67.4 47 68.1
CARHR135860 Cardamine hirsuta HOM05D007120 ORTHO05D008881 6.4e-10 66.6 58 53.4
Dinv34497 Davidia involucrata HOM05D006907 ORTHO05D008598 6.4e-10 66.6 46 65.2
Cfa001199 Carpinus fangiana HOM05D007120 ORTHO05D008881 8.4e-10 66.2 49 61.2
Duzib128G0262 Durio zibethinus HOM05D007120 ORTHO05D008881 8.4e-10 66.2 50 58.0
Manes.07G142200 Manihot esculenta HOM05D007120 ORTHO05D008881 8.4e-10 66.2 46 63.0
MSTRG.27254 Avicennia marina HOM05D007120 ORTHO05D008881 1.1e-09 65.9 40 70.0
FvH4_7g26050 Fragaria vesca HOM05D007120 ORTHO05D008881 1.1e-09 65.9 48 60.4
FAN03G2745 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.1e-09 65.9 48 60.4
FAN10G2835 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.1e-09 65.9 48 60.4
Gohir.D13G008000 Gossypium hirsutum HOM05D007120 ORTHO05D008881 1.1e-09 65.9 50 60.0
Cc02_g05250 Coffea canephora HOM05D007120 ORTHO05D008881 1.4e-09 65.5 47 59.6
MD03G1050700 Malus domestica HOM05D007120 ORTHO05D008881 1.4e-09 65.5 37 75.7
Os07g0680300 Oryza sativa ssp. japonica HOM05D007120 ORTHO05D008881 1.9e-09 65.1 42 66.7
BcaC02g12732 Brassica carinata HOM05D007120 ORTHO05D008881 2.4e-09 64.7 51 52.9
A05p01890 Brassica napus HOM05D007120 ORTHO05D008881 2.4e-09 64.7 51 52.9
CAN.G1229.12 Capsicum annuum HOM05D007120 ORTHO05D008881 2.4e-09 64.7 48 62.5
Potri.019G059500 Populus trichocarpa HOM05D007120 ORTHO05D008881 2.4e-09 64.7 50 58.0
Prupe.2G265200 Prunus persica HOM05D007120 ORTHO05D008881 2.4e-09 64.7 49 65.3
C04p02230 Brassica napus HOM05D007120 ORTHO05D008881 3.2e-09 64.3 51 52.9
BolC4t21869H Brassica oleracea HOM05D007120 ORTHO05D008881 3.2e-09 64.3 51 52.9
CANSAT56G4069 Cannabis sativa HOM05D007120 ORTHO05D008881 3.2e-09 64.3 51 52.9
C01p26040 Brassica napus HOM05D007120 ORTHO05D008881 4.2e-09 63.9 51 52.9
MD01G1169000 Malus domestica HOM05D007120 ORTHO05D008881 4.2e-09 63.9 47 63.8
Lsat_1_v5_gn_6_11060 Lactuca sativa HOM05D007120 ORTHO05D008881 5.5e-09 63.5 42 64.3
Nn2g10275 Nelumbo nucifera HOM05D007120 ORTHO05D008881 5.5e-09 63.5 43 65.1
Nn5g26831 Nelumbo nucifera HOM05D007120 ORTHO05D008881 5.5e-09 63.5 43 67.4
A04p31140 Brassica napus HOM05D007120 ORTHO05D008881 7.1e-09 63.2 47 55.3
BraA04t18569Z Brassica rapa HOM05D007120 ORTHO05D008881 7.1e-09 63.2 47 55.3
FAN11G0923 Fragaria x ananassa HOM05D007120 ORTHO05D008881 7.1e-09 63.2 44 65.9
Hund13439 Selenicereus undatus HOM05D007120 ORTHO05D008881 9.3e-09 62.8 48 54.2
C04p68540 Brassica napus HOM05D007120 ORTHO05D008881 2.1e-08 61.6 47 55.3
BolC4t28353H Brassica oleracea HOM05D007120 ORTHO05D008881 2.1e-08 61.6 47 55.3
FAN21G2234 Fragaria x ananassa HOM05D007120 ORTHO05D008881 2.1e-08 61.6 44 63.6
Gohir.A13G007800 Gossypium hirsutum HOM05D007120 ORTHO05D008881 2.1e-08 61.6 47 57.4
Lj1A968T57 Lonicera japonica HOM05D007120 ORTHO05D008881 2.1e-08 61.6 46 60.9
Prupe.6G040200 Prunus persica HOM05D007120 ORTHO05D008881 2.1e-08 61.6 39 66.7
Haze_17366 Corylus avellana HOM05D006907 ORTHO05D008598 2.7e-08 61.2 49 53.1
Sp4g23080 Schrenkiella parvula HOM05D007120 ORTHO05D008881 2.7e-08 61.2 56 53.6
PGSC0003DMG400020601 Solanum tuberosum HOM05D007120 ORTHO05D008881 2.7e-08 61.2 48 60.4
AL4G38650 Arabidopsis lyrata HOM05D007120 ORTHO05D008881 3.5e-08 60.8 47 53.2
AT2G40765 Arabidopsis thaliana HOM05D007120 ORTHO05D008881 3.5e-08 60.8 47 53.2
Thecc.10G184500 Theobroma cacao HOM05D007120 ORTHO05D008881 3.5e-08 60.8 45 57.8
C01p18970 Brassica napus HOM05D007120 ORTHO05D008881 4.6e-08 60.5 52 51.9
Solyc03g095730.4 Solanum lycopersicum HOM05D007120 ORTHO05D008881 1.0e-07 59.3 48 58.3
A03p22930 Brassica napus HOM05D007120 ORTHO05D008881 1.3e-07 58.9 47 51.1
BolC3t15101H Brassica oleracea HOM05D007120 ORTHO05D008881 1.3e-07 58.9 47 51.1
BraA03t11516Z Brassica rapa HOM05D007120 ORTHO05D008881 1.3e-07 58.9 47 51.1
HanXRQChr02g0048061 Helianthus annuus HOM05D007120 ORTHO05D008881 1.3e-07 58.9 44 59.1
BcaB01g03516 Brassica carinata HOM05D007120 ORTHO05D008881 3.0e-07 57.8 44 52.3
Manes.10G002800 Manihot esculenta HOM05D007120 ORTHO05D008881 3.0e-07 57.8 50 54.0
CSS0015321 Camellia sinensis var. sinensis HOM05D007120 ORTHO05D008881 3.9e-07 57.4 39 61.5
HanXRQChr10g0312991 Helianthus annuus HOM05D007120 ORTHO05D008881 3.9e-07 57.4 42 59.5
ATR1127G135 Amborella trichopoda HOM05D007120 ORTHO05D008881 5.1e-07 57.0 48 50.0
FAN01G0895 Fragaria x ananassa HOM05D007120 ORTHO05D008881 8.7e-07 56.2 65 46.2
Carub.0004s2306 Capsella rubella HOM05D007120 ORTHO05D008881 1.1e-06 55.8 47 48.9
Oeu006064.1 Olea europaea HOM05D007120 ORTHO05D008881 1.1e-06 55.8 50 48.0
FAN06G1351 Fragaria x ananassa HOM05D007120 ORTHO05D008881 1.5e-06 55.5 32 68.8
DCAR_018042 Daucus carota HOM05D007120 ORTHO05D008881 1.9e-06 55.1 40 60.0
C04p16380 Brassica napus HOM05D007120 ORTHO05D008881 2.5e-06 54.7 40 55.0
CiPaw.09G151000 Carya illinoinensis HOM05D007120 ORTHO05D008881 3.3e-06 54.3 47 46.8
MBI15_g39383_MAGBIO Magnolia biondii HOM05D007120 ORTHO05D008881 4.3e-06 53.9 44 59.1
Nitab4.5_0000375g0220 Nicotiana tabacum HOM05D007120 ORTHO05D008881 5.6e-06 53.5 63 47.6


User provided reference genes

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