Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0003310 Lotus japonicus HOM05D000901 ORTHO05D004766 1.3e-134 483.0 240 100.0
Glyma.04G021400 Glycine max HOM05D000901 ORTHO05D004766 9.5e-93 344.0 225 74.2
Glyma.04G021300 Glycine max HOM05D000901 ORTHO05D004766 4.7e-92 341.7 230 70.9
Phvul.009G019200 Phaseolus vulgaris HOM05D000901 ORTHO05D004766 2.6e-90 335.9 229 70.7
arahy.Tifrunner.gnm1.ann1.774XMB Arachis hypogaea HOM05D000901 ORTHO05D004766 7.5e-90 334.3 233 68.7
arahy.Tifrunner.gnm1.ann1.K685T3 Arachis hypogaea HOM05D000901 ORTHO05D004766 9.8e-90 334.0 233 68.7
Lalb_Chr11g0061781 Lupinus albus HOM05D000901 ORTHO05D004766 8.3e-89 330.9 239 69.0
Medtr0332s0020 Medicago truncatula HOM05D000901 ORTHO05D004766 2.0e-87 326.2 230 67.4
Ca_11598_v3 Cicer arietinum L. HOM05D000901 ORTHO05D004766 3.0e-86 322.4 212 71.7
TPR.G9568 Trifolium pratense HOM05D000901 ORTHO05D004766 5.0e-86 321.6 229 67.7
VMungo1309G2869 Vigna mungo HOM05D002716 ORTHO05D003324 2.1e-84 316.2 210 71.4
Manes.05G143600 Manihot esculenta HOM05D000901 ORTHO05D004766 3.0e-78 295.8 228 63.6
Psat7g082200 Pisum sativum HOM05D000901 ORTHO05D004766 1.9e-77 293.1 223 64.6
CiPaw.07G144500 Carya illinoinensis HOM05D000901 ORTHO05D004766 5.6e-77 291.6 223 63.7
Prupe.1G360400 Prunus persica HOM05D000901 ORTHO05D004766 4.7e-76 288.5 231 59.7
QL02p012636 Quercus lobata HOM05D000901 ORTHO05D004766 6.2e-76 288.1 243 61.7
Cpa.g.sc26.277 Carica papaya HOM05D000901 ORTHO05D004766 4.0e-75 285.4 225 60.4
FvH4_2g38030 Fragaria vesca HOM05D000901 ORTHO05D004766 5.2e-75 285.0 231 61.0
RcHm_v2.0_Chr6g0303571 Rosa chinensis HOM05D000901 ORTHO05D004766 5.2e-75 285.0 230 62.2
MD08G1008700 Malus domestica HOM05D000901 ORTHO05D004766 2.6e-74 282.7 236 57.2
Cfa013996 Carpinus fangiana HOM05D000901 ORTHO05D004766 3.4e-74 282.3 224 62.1
Sabra05G0189000 Salix brachista HOM05D000901 ORTHO05D004766 5.8e-74 281.6 220 62.3
MD15G1007500 Malus domestica HOM05D000901 ORTHO05D004766 1.3e-73 280.4 230 57.8
Oeu048721.1 Olea europaea HOM05D000901 ORTHO05D004766 1.4e-72 276.9 223 58.7
COL.COLO4_26098 Corchorus olitorius HOM05D000901 ORTHO05D004766 1.9e-72 276.6 231 57.1
Potri.005G244400 Populus trichocarpa HOM05D000901 ORTHO05D004766 7.1e-72 274.6 217 60.4
Potri.002G017500 Populus trichocarpa HOM05D000901 ORTHO05D004766 9.2e-72 274.2 194 66.5
Thecc.08G049900 Theobroma cacao HOM05D000901 ORTHO05D004766 2.1e-71 273.1 211 60.2
TAR381G0201 Trochodendron aralioides HOM05D000901 ORTHO05D004766 7.8e-71 271.2 231 58.9
EL10Ac1g02116 Beta vulgaris HOM05D000901 ORTHO05D004766 1.0e-70 270.8 193 64.8
TWI56G0802 Tripterygium wilfordii HOM05D000901 ORTHO05D004766 1.0e-70 270.8 211 58.3
CANSAT25G0446 Cannabis sativa HOM05D000901 ORTHO05D004766 2.3e-70 269.6 232 58.2
FAN20G3106 Fragaria x ananassa HOM05D000901 ORTHO05D004766 6.6e-70 268.1 218 59.2
CSS0047191 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 8.6e-70 267.7 208 60.6
CSS0049889 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 8.6e-70 267.7 208 60.6
Gorai.010G001700 Gossypium raimondii HOM05D000901 ORTHO05D004766 3.3e-69 265.8 209 58.9
Ciclev10002332m.g Citrus clementina HOM05D000901 ORTHO05D004766 5.6e-69 265.0 235 57.0
DCAR_013891 Daucus carota HOM05D000901 ORTHO05D004766 5.6e-69 265.0 218 59.6
Thhalv10019591m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 5.6e-69 265.0 219 56.6
PGR031G2145 Punica granatum HOM05D000901 ORTHO05D004766 5.6e-69 265.0 213 60.1
Thecc.08G050000 Theobroma cacao HOM05D000901 ORTHO05D004766 5.6e-69 265.0 209 58.9
BcaC03g15640 Brassica carinata HOM05D000901 ORTHO05D004766 7.3e-69 264.6 230 56.5
AUR62036698 Chenopodium quinoa HOM05D000901 ORTHO05D004766 7.3e-69 264.6 216 58.3
Nitab4.5_0002730g0020 Nicotiana tabacum HOM05D000901 ORTHO05D004766 3.6e-68 262.3 229 56.3
Hund01706 Selenicereus undatus HOM05D000901 ORTHO05D004766 3.6e-68 262.3 207 60.9
Duzib041G0373 Durio zibethinus HOM05D000901 ORTHO05D004766 4.7e-68 261.9 205 59.5
Lj4A800T39 Lonicera japonica HOM05D000901 ORTHO05D004766 1.8e-67 260.0 202 61.9
BolC2t09354H Brassica oleracea HOM05D000901 ORTHO05D004766 2.3e-67 259.6 222 57.7
CAN.G1517.1 Capsicum annuum HOM05D000901 ORTHO05D004766 3.1e-67 259.2 197 61.9
A02p20390 Brassica napus HOM05D000901 ORTHO05D004766 4.0e-67 258.8 225 56.9
BraA02t07071Z Brassica rapa HOM05D000901 ORTHO05D004766 6.8e-67 258.1 224 55.4
Sp5g31130 Schrenkiella parvula HOM05D000901 ORTHO05D004766 6.8e-67 258.1 229 55.0
PGSC0003DMG400029329 Solanum tuberosum HOM05D000901 ORTHO05D004766 8.9e-67 257.7 223 57.0
Aqoxy5G01833 Aquilegia oxysepala HOM05D000901 ORTHO05D004766 1.2e-66 257.3 228 57.0
A07p41510 Brassica napus HOM05D000901 ORTHO05D004766 1.2e-66 257.3 205 61.5
Eucgr.F03719 Eucalyptus grandis HOM05D000901 ORTHO05D004766 1.2e-66 257.3 209 58.4
ClCG08G014120 Citrullus lanatus HOM05D000901 ORTHO05D004766 1.5e-66 256.9 204 60.3
AT1G76020 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 2.0e-66 256.5 220 55.9
C02p33510 Brassica napus HOM05D000901 ORTHO05D004766 2.0e-66 256.5 222 57.2
PSO063G0231 Papaver somniferum HOM05D000901 ORTHO05D004766 2.6e-66 256.1 231 56.7
CsaV3_2G024310 Cucumis sativus L. HOM05D000901 ORTHO05D004766 4.4e-66 255.4 228 55.7
Peaxi162Scf00064g00828 Petunia axillaris HOM05D000901 ORTHO05D004766 4.4e-66 255.4 202 60.9
Carub.0002s2290 Capsella rubella HOM05D000901 ORTHO05D004766 7.6e-66 254.6 211 58.3
AUR62013896 Chenopodium quinoa HOM05D000901 ORTHO05D004766 7.6e-66 254.6 198 61.6
Nitab4.5_0000498g0060 Nicotiana tabacum HOM05D000901 ORTHO05D004766 7.6e-66 254.6 208 58.7
Sopen12g031250 Solanum pennellii HOM05D000901 ORTHO05D004766 9.9e-66 254.2 230 56.1
Migut.C00891 Erythranthe guttata HOM05D000901 ORTHO05D004766 1.3e-65 253.8 218 54.1
CSS0010771 Camellia sinensis var. sinensis HOM05D000901 ORTHO05D004766 1.7e-65 253.4 199 60.3
Sed0006708 Sechium edule HOM05D000901 ORTHO05D004766 2.2e-65 253.1 200 60.5
MELO3C011351.2 Cucumis melo HOM05D000901 ORTHO05D004766 2.9e-65 252.7 235 52.8
Eucgr.F01691 Eucalyptus grandis HOM05D000901 ORTHO05D004766 2.9e-65 252.7 223 57.0
vmacro04376 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 3.8e-65 252.3 217 57.6
vmacro21856 Vaccinium macrocarpon HOM05D000901 ORTHO05D004766 6.4e-65 251.5 194 59.8
Lj2g0002110 Lotus japonicus HOM05D000901 ORTHO05D004766 1.1e-64 250.8 173 79.2
Nitab4.5_0001936g0050 Nicotiana tabacum HOM05D000901 ORTHO05D004766 1.9e-64 250.0 212 57.5
BcaC08g47093 Brassica carinata HOM05D000901 ORTHO05D004766 2.4e-64 249.6 215 58.6
C06p49920 Brassica napus HOM05D000901 ORTHO05D004766 9.2e-64 247.7 205 58.5
PSO782G4846 Papaver somniferum HOM05D000901 ORTHO05D004766 9.2e-64 247.7 221 55.7
CARHR069550 Cardamine hirsuta HOM05D000901 ORTHO05D004766 2.1e-63 246.5 212 57.5
Hund05158 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.7e-63 246.1 191 58.6
Hund05161 Selenicereus undatus HOM05D000901 ORTHO05D004766 2.7e-63 246.1 191 58.6
DCAR_013892 Daucus carota HOM05D000901 ORTHO05D004766 3.5e-63 245.7 222 55.0
Sc15g0004710 Simmondsia chinensis HOM05D000901 ORTHO05D004766 6.0e-63 245.0 219 55.3
SGA_v2.0_scaffold145G36086 Striga asiatica HOM05D000901 ORTHO05D004766 6.0e-63 245.0 201 57.7
THA.LOC104813773 Tarenaya hassleriana HOM05D000901 ORTHO05D004766 7.8e-63 244.6 210 54.8
Gohir.A06G001500 Gossypium hirsutum HOM05D000901 ORTHO05D004766 1.3e-62 243.8 177 61.6
Aa31LG4G6150 Aethionema arabicum HOM05D000901 ORTHO05D004766 1.7e-62 243.4 214 55.6
BcaC08g47306 Brassica carinata HOM05D000901 ORTHO05D004766 1.7e-62 243.4 205 58.0
BcaC08g47307 Brassica carinata HOM05D000901 ORTHO05D004766 1.7e-62 243.4 205 58.0
Lsat_1_v5_gn_2_7381 Lactuca sativa HOM05D000901 ORTHO05D004766 1.7e-62 243.4 226 54.0
HanXRQChr06g0184521 Helianthus annuus HOM05D000901 ORTHO05D004766 3.0e-62 242.7 218 53.7
MBI05_g36763_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 5.1e-62 241.9 206 56.3
Nn6g31933 Nelumbo nucifera HOM05D000901 ORTHO05D004766 5.1e-62 241.9 222 54.1
Ah.00g000720 Amaranthus hybridus HOM05D000901 ORTHO05D004766 6.6e-62 241.5 214 56.5
Peaxi162Scf00289g00084 Petunia axillaris HOM05D000901 ORTHO05D004766 8.6e-62 241.1 232 52.6
PGR083G1908 Punica granatum HOM05D000901 ORTHO05D004766 8.6e-62 241.1 217 55.8
Solyc12g094380.2 Solanum lycopersicum HOM05D000901 ORTHO05D004766 1.1e-61 240.7 206 57.3
BraA07t31683Z Brassica rapa HOM05D000901 ORTHO05D004766 1.5e-61 240.4 224 54.0
Lj4A18T108 Lonicera japonica HOM05D000901 ORTHO05D004766 2.5e-61 239.6 202 57.9
HanXRQChr14g0429411 Helianthus annuus HOM05D000901 ORTHO05D004766 5.6e-61 238.4 215 52.6
Cc10_g01220 Coffea canephora HOM05D000901 ORTHO05D004766 7.3e-61 238.0 205 55.1
ECA238G3494 Erigeron canadensis HOM05D000901 ORTHO05D004766 1.6e-60 236.9 199 56.3
Sopen12g031260 Solanum pennellii HOM05D000901 ORTHO05D004766 1.6e-60 236.9 212 55.7
AL2G36040 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 2.1e-60 236.5 247 49.8
Actinidia37946 Actinidia chinensis HOM05D000901 ORTHO05D004766 2.8e-60 236.1 206 52.9
BolC6t40030H Brassica oleracea HOM05D000901 ORTHO05D004766 6.2e-60 235.0 223 53.8
GSVIVG01008758001 Vitis vinifera HOM05D000901 ORTHO05D004766 6.2e-60 235.0 237 49.8
Hund05157 Selenicereus undatus HOM05D000901 ORTHO05D004766 8.1e-60 234.6 197 54.8
Hund05162 Selenicereus undatus HOM05D000901 ORTHO05D004766 8.1e-60 234.6 197 54.8
Sp1g17990 Schrenkiella parvula HOM05D000901 ORTHO05D004766 1.1e-59 234.2 228 49.6
AT1G20225 Arabidopsis thaliana HOM05D000901 ORTHO05D004766 1.8e-59 233.4 213 52.1
C05p18770 Brassica napus HOM05D000901 ORTHO05D004766 2.4e-59 233.0 212 51.9
BcaB07g32030 Brassica carinata HOM05D000901 ORTHO05D004766 4.0e-59 232.3 212 51.9
BcaC05g25925 Brassica carinata HOM05D000901 ORTHO05D004766 4.0e-59 232.3 218 50.5
BolC5t30582H Brassica oleracea HOM05D000901 ORTHO05D004766 4.0e-59 232.3 212 51.9
MSTRG.1155 Avicennia marina HOM05D000901 ORTHO05D004766 6.9e-59 231.5 211 51.2
SalBow7G4280 Salvia bowleyana HOM05D000901 ORTHO05D004766 6.9e-59 231.5 203 51.7
MSTRG.1154 Avicennia marina HOM05D000901 ORTHO05D004766 8.9e-59 231.1 211 52.1
CARHR020720 Cardamine hirsuta HOM05D000901 ORTHO05D004766 1.5e-58 230.3 213 50.2
BraA06t24738Z Brassica rapa HOM05D000901 ORTHO05D004766 2.0e-58 229.9 212 51.4
A06p16340 Brassica napus HOM05D000901 ORTHO05D004766 3.4e-58 229.2 208 52.4
Carub.0001s1975 Capsella rubella HOM05D000901 ORTHO05D004766 7.6e-58 228.0 213 49.8
DCAR_025124 Daucus carota HOM05D000901 ORTHO05D004766 7.6e-58 228.0 232 50.0
AL1G33070 Arabidopsis lyrata HOM05D000901 ORTHO05D004766 9.9e-58 227.6 213 50.2
Aa31LG7G4620 Aethionema arabicum HOM05D000901 ORTHO05D004766 8.4e-57 224.6 221 48.9
HPP92_025437 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.2e-56 222.2 189 56.6
ATR0661G262 Amborella trichopoda HOM05D000901 ORTHO05D004766 7.1e-56 221.5 196 52.6
HPP92_022203 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.6e-55 218.8 193 53.4
HPP92_026881 Vanilla planifolia HOM05D000901 ORTHO05D004766 4.6e-55 218.8 201 53.2
HPP92_003483 Vanilla planifolia HOM05D000901 ORTHO05D004766 3.0e-54 216.1 201 52.7
unitig_32.g11240 Utricularia gibba HOM05D000901 ORTHO05D004766 5.1e-54 215.3 205 51.7
Os04g0227500 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 2.5e-53 213.0 220 47.3
Nn5g30828 Nelumbo nucifera HOM05D000901 ORTHO05D004766 7.3e-53 211.5 204 49.0
Os09g0542200 Oryza sativa ssp. japonica HOM05D000901 ORTHO05D004766 4.8e-52 208.8 191 53.4
SEGI_34166 Sequoiadendron giganteum HOM05D000901 ORTHO05D004766 1.4e-51 207.2 215 49.3
Zm00001eb103900 Zea mays HOM05D000901 ORTHO05D004766 2.4e-51 206.5 237 48.5
FAN27G1122 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.2e-50 204.1 174 59.2
CDE09G0289 Ceratophyllum demersum HOM05D000901 ORTHO05D004766 2.6e-50 203.0 220 49.5
Psat7g082240 Pisum sativum HOM05D000901 ORTHO05D004766 4.9e-49 198.7 137 65.7
SGA_v2.0_scaffold292G47381 Striga asiatica HOM05D000901 ORTHO05D004766 1.1e-45 187.6 191 47.6
Nitab4.5_0010135g0010 Nicotiana tabacum HOM05D000901 ORTHO05D004766 9.6e-45 184.5 213 45.5
Rhsim06G0013400 Rhododendron simsii HOM05D000901 ORTHO05D004766 2.1e-44 183.3 149 59.1
Rhsim07G0249300 Rhododendron simsii HOM05D000901 ORTHO05D004766 1.1e-43 181.0 194 50.0
Thhalv10010046m.g Eutrema salsugineum HOM05D000901 ORTHO05D004766 5.8e-42 175.3 172 49.4
SMO137G0357 Selaginella moellendorffii HOM05D000901 ORTHO05D004766 2.9e-41 172.9 218 42.7
Dinv31885 Davidia involucrata HOM05D000901 ORTHO05D001160 3.8e-41 172.6 127 63.0
Actinidia29763 Actinidia chinensis HOM05D000901 ORTHO05D004766 2.4e-40 169.9 208 45.2
MBI05_g08641_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 3.2e-40 169.5 145 55.9
Pp3c23_11410 Physcomitrium patens HOM05D000901 ORTHO05D004766 4.3e-37 159.1 209 40.7
Mapoly0103s0033 Marchantia polymorpha HOM05D000901 ORTHO05D004766 1.8e-35 153.7 192 42.7
Haze_22688 Corylus avellana HOM05D000901 ORTHO05D004766 2.0e-34 150.2 112 63.4
FAN15G2950 Fragaria x ananassa HOM05D000901 ORTHO05D001160 1.3e-33 147.5 174 46.6
BolC1t01801H Brassica oleracea HOM05D000901 ORTHO05D004766 2.9e-33 146.4 118 61.9
Oeu048720.1 Olea europaea HOM05D000901 ORTHO05D004766 2.1e-31 140.2 95 70.5
Eucgr.L01283 Eucalyptus grandis HOM05D000901 ORTHO05D004766 7.9e-31 138.3 97 69.1
MSTRG.25272 Avicennia marina HOM05D000901 ORTHO05D004766 1.9e-29 133.7 112 58.0
Zm00001eb419520 Zea mays HOM05D000901 ORTHO05D004766 1.6e-28 130.6 133 48.9
MBI05_g19938_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 1.1e-27 127.9 131 49.6
BcaB05g24967 Brassica carinata HOM05D000901 ORTHO05D001160 1.5e-26 124.0 110 53.6
BcaC01g02788 Brassica carinata HOM05D000901 ORTHO05D004766 7.2e-24 115.2 110 50.9
BcaC09g50963 Brassica carinata HOM05D000901 ORTHO05D004766 9.3e-24 114.8 94 59.6
CBR_g10910 Chara braunii HOM05D000901 ORTHO05D004766 1.6e-23 114.0 175 38.9
AagrBONN_evm.TU.Sc2ySwM_228.1931 Anthoceros agrestis HOM05D000901 ORTHO05D004766 2.7e-23 113.2 173 37.6
C03p50790 Brassica napus HOM05D000901 ORTHO05D004766 2.7e-23 113.2 110 49.1
BolC6t40031H Brassica oleracea HOM05D000901 ORTHO05D004766 7.9e-23 111.7 136 44.1
MBI05_g47803_MAGBIO Magnolia biondii HOM05D000901 ORTHO05D004766 2.3e-22 110.2 149 41.6
AUR62036699 Chenopodium quinoa HOM05D000901 ORTHO05D004766 4.3e-21 105.9 102 49.0
C07p15020 Brassica napus HOM05D000901 ORTHO05D004766 3.7e-20 102.8 101 50.5
Haze_22689 Corylus avellana HOM05D000901 ORTHO05D004766 6.3e-20 102.1 125 48.0
CiPaw.07G144400 Carya illinoinensis HOM05D000901 ORTHO05D004766 2.4e-19 100.1 88 47.7
Rhsim07G0249200 Rhododendron simsii HOM05D000901 ORTHO05D004766 3.4e-18 96.3 63 69.8
BolC6t37476H Brassica oleracea HOM05D000901 ORTHO05D004766 2.9e-17 93.2 84 51.2
C03p60410 Brassica napus HOM05D000901 ORTHO05D004766 3.2e-16 89.7 85 50.6
Ciclev10027478m.g Citrus clementina HOM05D000901 ORTHO05D004766 1.6e-15 87.4 92 48.9
BolC3t18302H Brassica oleracea HOM05D000901 ORTHO05D004766 1.1e-13 81.3 77 50.6
BcaC09g50962 Brassica carinata HOM05D000901 ORTHO05D004766 1.7e-12 77.4 59 55.9
Eucgr.H01097 Eucalyptus grandis HOM05D000901 ORTHO05D004766 4.5e-10 69.3 66 53.0


User provided reference genes

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