Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0003243 Lotus japonicus HOM05D006578 ORTHO05D008100 1.1e-72 276.6 144 100.0
Glyma.09G263100 Glycine max HOM05D006578 ORTHO05D008100 1.5e-40 169.9 147 65.3
Medtr7g076620 Medicago truncatula HOM05D006578 ORTHO05D008100 1.1e-38 163.7 148 60.8
arahy.Tifrunner.gnm1.ann1.6WXN94 Arachis hypogaea HOM05D006578 ORTHO05D008100 8.9e-38 160.6 141 63.1
arahy.Tifrunner.gnm1.ann1.UYM9MT Arachis hypogaea HOM05D006578 ORTHO05D008100 8.9e-38 160.6 141 67.4
Lj3g0025915 Lotus japonicus HOM05D006578 ORTHO05D008100 2.2e-36 156.0 142 60.6
Glyma.07G075100 Glycine max HOM05D006578 ORTHO05D008100 3.7e-36 155.2 142 55.6
VMungo1383G2377 Vigna mungo HOM05D006578 ORTHO05D008100 7.1e-35 151.0 145 64.8
Psat3g111760 Pisum sativum HOM05D006578 ORTHO05D008100 4.6e-34 148.3 142 59.2
Glyma.18G229100 Glycine max HOM05D006578 ORTHO05D008100 1.7e-33 146.4 151 63.6
Medtr8g032260 Medicago truncatula HOM05D006578 ORTHO05D008100 1.7e-33 146.4 147 55.8
Phvul.010G094000 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 1.7e-33 146.4 140 53.6
Phvul.008G068900 Phaseolus vulgaris HOM05D006578 ORTHO05D008100 5.1e-33 144.8 144 59.7
Ca_07882_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 1.1e-32 143.7 142 59.2
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 3.6e-31 138.7 140 50.7
Ca_18845_v3 Cicer arietinum L. HOM05D006578 ORTHO05D008100 1.4e-30 136.7 144 52.8
Lalb_Chr04g0256691 Lupinus albus HOM05D006578 ORTHO05D008100 3.4e-29 132.1 151 58.3
Thecc.03G298500 Theobroma cacao HOM05D006578 ORTHO05D008100 3.4e-29 132.1 147 53.1
COL.COLO4_10707 Corchorus olitorius HOM05D006578 ORTHO05D008100 4.4e-29 131.7 147 55.8
TPR.G17579 Trifolium pratense HOM05D006578 ORTHO05D008100 2.9e-28 129.0 140 53.6
Duzib068G0825 Durio zibethinus HOM05D006578 ORTHO05D008100 8.4e-28 127.5 140 54.3
Dinv37530 Davidia involucrata HOM05D006578 ORTHO05D008100 5.4e-27 124.8 147 52.4
Cpa.g.sc79.32 Carica papaya HOM05D006578 ORTHO05D008100 1.6e-26 123.2 143 49.7
Potri.001G091300 Populus trichocarpa HOM05D006578 ORTHO05D008100 1.6e-26 123.2 143 49.7
Gohir.A05G346600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 2.1e-26 122.9 142 49.3
Sabra01G0067600 Salix brachista HOM05D006578 ORTHO05D008100 4.6e-26 121.7 132 51.5
THA.LOC104815081 Tarenaya hassleriana HOM05D006578 ORTHO05D008100 3.0e-25 119.0 143 47.6
Atru.chr9.1977 Acer truncatum HOM05D006578 ORTHO05D008100 6.6e-25 117.9 146 47.9
Atru.chr9.1992 Acer truncatum HOM05D006578 ORTHO05D008100 6.6e-25 117.9 146 47.9
PGR042G0620 Punica granatum HOM05D006578 ORTHO05D008100 1.1e-24 117.1 140 46.4
Glyma.03G015000 Glycine max HOM05D006578 ORTHO05D008100 2.5e-24 115.9 132 53.0
Prupe.5G120500 Prunus persica HOM05D006578 ORTHO05D008100 4.3e-24 115.2 149 47.7
Ciclev10024562m.g Citrus clementina HOM05D006578 ORTHO05D008100 7.3e-24 114.4 143 46.9
Potri.003G140400 Populus trichocarpa HOM05D006578 ORTHO05D008100 1.2e-23 113.6 139 48.2
ClCG07G011600 Citrullus lanatus HOM05D006578 ORTHO05D008100 2.8e-23 112.5 141 47.5
Manes.02G009600 Manihot esculenta HOM05D006578 ORTHO05D008100 3.6e-23 112.1 143 49.0
AT4G23890 Arabidopsis thaliana HOM05D006578 ORTHO05D008100 1.1e-22 110.5 143 46.9
MELO3C016296.2 Cucumis melo HOM05D006578 ORTHO05D008100 1.1e-22 110.5 144 46.5
CsaV3_4G006610 Cucumis sativus L. HOM05D006578 ORTHO05D008100 1.4e-22 110.2 145 46.9
Sp7g21850 Schrenkiella parvula HOM05D006578 ORTHO05D008100 1.8e-22 109.8 145 44.1
BraA01t01458Z Brassica rapa HOM05D006578 ORTHO05D008100 3.1e-22 109.0 113 52.2
FvH4_5g04650 Fragaria vesca HOM05D006578 ORTHO05D008100 4.0e-22 108.6 151 45.0
CARHR231290 Cardamine hirsuta HOM05D006578 ORTHO05D008100 5.2e-22 108.2 127 50.4
CSS0036002 Camellia sinensis var. sinensis HOM05D006578 ORTHO05D008100 6.9e-22 107.8 144 47.2
MSTRG.11922 Avicennia marina HOM05D006578 ORTHO05D008100 9.0e-22 107.5 145 44.1
Oeu009960.1 Olea europaea HOM05D006578 ORTHO05D008100 1.2e-21 107.1 139 47.5
Actinidia27316 Actinidia chinensis HOM05D006578 ORTHO05D008100 1.5e-21 106.7 97 51.5
Carub.0007s1722 Capsella rubella HOM05D006578 ORTHO05D008100 1.5e-21 106.7 134 47.8
Cfa012002 Carpinus fangiana HOM05D006578 ORTHO05D008100 2.0e-21 106.3 148 50.7
CiPaw.12G082500 Carya illinoinensis HOM05D006578 ORTHO05D008100 2.0e-21 106.3 135 48.9
GSVIVG01019536001 Vitis vinifera HOM05D006578 ORTHO05D008100 2.0e-21 106.3 131 47.3
Aa31LG6G7150 Aethionema arabicum HOM05D006578 ORTHO05D008100 3.4e-21 105.5 142 43.7
Nitab4.5_0001210g0110 Nicotiana tabacum HOM05D006578 ORTHO05D008100 3.4e-21 105.5 130 52.3
A01p15200 Brassica napus HOM05D006578 ORTHO05D008100 5.8e-21 104.8 110 51.8
Cc08_g16100 Coffea canephora HOM05D006578 ORTHO05D008100 5.8e-21 104.8 130 45.4
Nitab4.5_0006775g0020 Nicotiana tabacum HOM05D006578 ORTHO05D008100 7.6e-21 104.4 135 51.1
Ah.07g197460 Amaranthus hybridus HOM05D006578 ORTHO05D008100 9.9e-21 104.0 140 44.3
CAN.G1804.8 Capsicum annuum HOM05D006578 ORTHO05D008100 9.9e-21 104.0 134 51.5
Lsat_1_v5_gn_3_10861 Lactuca sativa HOM05D006578 ORTHO05D008100 9.9e-21 104.0 142 54.2
PGSC0003DMG400044958 Solanum tuberosum HOM05D006578 ORTHO05D008100 9.9e-21 104.0 130 50.8
BcaNung04080 Brassica carinata HOM05D006578 ORTHO05D008100 1.3e-20 103.6 139 42.4
FAN18G3822 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.3e-20 103.6 151 43.0
BcaNung04242 Brassica carinata HOM05D006578 ORTHO05D008100 1.7e-20 103.2 123 44.7
C07p53190 Brassica napus HOM05D006578 ORTHO05D008100 1.7e-20 103.2 123 44.7
BolC7t45814H Brassica oleracea HOM05D006578 ORTHO05D008100 1.7e-20 103.2 123 44.7
Migut.A00640 Erythranthe guttata HOM05D006578 ORTHO05D008100 1.7e-20 103.2 139 44.6
FAN18G0518 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.7e-20 103.2 151 43.0
Sed0010985 Sechium edule HOM05D006578 ORTHO05D008100 1.7e-20 103.2 128 48.4
TAR633G0540 Trochodendron aralioides HOM05D006578 ORTHO05D008100 1.7e-20 103.2 149 46.3
Hma1.2p1_0359F.1_g135230 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 2.2e-20 102.8 147 47.6
Peaxi162Scf00074g00082 Petunia axillaris HOM05D006578 ORTHO05D008100 2.2e-20 102.8 128 44.5
AL7G29450 Arabidopsis lyrata HOM05D006578 ORTHO05D008100 2.9e-20 102.4 137 42.3
BcaNung01096 Brassica carinata HOM05D006578 ORTHO05D008100 2.9e-20 102.4 124 44.4
A03p54830 Brassica napus HOM05D006578 ORTHO05D008100 4.9e-20 101.7 108 59.3
BraA03t14550Z Brassica rapa HOM05D006578 ORTHO05D008100 6.4e-20 101.3 123 49.6
ATR0796G340 Amborella trichopoda HOM05D006578 ORTHO05D008100 8.4e-20 100.9 148 41.2
CiPaw.11G120900 Carya illinoinensis HOM05D006578 ORTHO05D008100 8.4e-20 100.9 144 45.1
BolC1t01839H Brassica oleracea HOM05D006578 ORTHO05D008100 1.1e-19 100.5 130 44.6
FAN13G1942 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.1e-19 100.5 147 42.9
HanXRQChr17g0534801 Helianthus annuus HOM05D006578 ORTHO05D008100 1.1e-19 100.5 140 48.6
Sopen08g030660 Solanum pennellii HOM05D006578 ORTHO05D008100 1.1e-19 100.5 130 47.7
C01p19130 Brassica napus HOM05D006578 ORTHO05D008100 1.4e-19 100.1 130 44.6
FAN08G0426 Fragaria x ananassa HOM05D006578 ORTHO05D008100 1.9e-19 99.8 147 42.2
DCAR_029888 Daucus carota HOM05D006578 ORTHO05D008100 3.2e-19 99.0 131 41.2
Thhalv10027518m.g Eutrema salsugineum HOM05D006578 ORTHO05D008100 3.2e-19 99.0 140 42.1
FAN04G1820 Fragaria x ananassa HOM05D006578 ORTHO05D008100 3.2e-19 99.0 147 42.2
BcaC09g50934 Brassica carinata HOM05D006578 ORTHO05D008100 4.2e-19 98.6 91 53.8
EL10Ac5g12919 Beta vulgaris HOM05D006578 ORTHO05D008100 5.4e-19 98.2 135 42.2
TWI60G1670 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 9.3e-19 97.4 145 42.8
Solyc08g082400.1 Solanum lycopersicum HOM05D006578 ORTHO05D008100 1.6e-18 96.7 126 47.6
TWI81G0713 Tripterygium wilfordii HOM05D006578 ORTHO05D008100 2.1e-18 96.3 131 42.7
Sc07g0010050 Simmondsia chinensis HOM05D006578 ORTHO05D008100 1.7e-17 93.2 129 49.6
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 2.3e-17 92.8 97 51.5
ECA246G0449 Erigeron canadensis HOM05D001832 ORTHO05D001861 3.0e-17 92.4 139 49.6
unitig_32.g10973 Utricularia gibba HOM05D006578 ORTHO05D008100 3.9e-17 92.0 140 40.7
Zm00001eb224490 Zea mays HOM05D006578 ORTHO05D008100 3.9e-17 92.0 112 46.4
Psat4g152960 Pisum sativum HOM05D006578 ORTHO05D008100 4.3e-16 88.6 145 40.7
QL02p030348 Quercus lobata HOM05D006578 ORTHO05D008100 5.6e-16 88.2 88 53.4
HPP92_001215 Vanilla planifolia HOM05D006578 ORTHO05D008100 5.6e-16 88.2 112 46.4
Gohir.D04G065600 Gossypium hirsutum HOM05D006578 ORTHO05D008100 9.6e-16 87.4 142 40.1
PSO761G0627 Papaver somniferum HOM05D006578 ORTHO05D008100 1.6e-15 86.7 144 45.8
Gorai.012G073800 Gossypium raimondii HOM05D006578 ORTHO05D008100 2.8e-15 85.9 142 39.4
Lj2P167T19 Lonicera japonica HOM05D006578 ORTHO05D008100 2.8e-15 85.9 86 51.2
SEGI_13573 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 3.6e-15 85.5 95 44.2
SEGI_09764 Sequoiadendron giganteum HOM05D006578 ORTHO05D008100 6.2e-15 84.7 120 39.2
Os07g0196200 Oryza sativa ssp. japonica HOM05D006578 ORTHO05D008100 1.8e-14 83.2 120 48.3
Sabra03G0101400 Salix brachista HOM05D006578 ORTHO05D008100 1.8e-14 83.2 125 42.4
AUR62010844 Chenopodium quinoa HOM05D006578 ORTHO05D008100 2.4e-14 82.8 133 39.1
Haze_09067 Corylus avellana HOM05D006578 ORTHO05D008100 4.0e-14 82.0 90 50.0
Aqoxy2G01516 Aquilegia oxysepala HOM05D006578 ORTHO05D008100 5.3e-14 81.6 134 46.3
AagrBONN_evm.TU.Sc2ySwM_117.36 Anthoceros agrestis HOM05D006578 ORTHO05D008100 6.9e-14 81.3 138 34.8
PSO210G4984 Papaver somniferum HOM05D006578 ORTHO05D008100 6.9e-14 81.3 143 44.8
Sabra15G0075700 Salix brachista HOM05D000345 ORTHO05D000215 4.9e-12 75.1 75 52.0
SalBow1G4365 Salvia bowleyana HOM05D006578 ORTHO05D008100 2.7e-10 69.3 90 48.9
SalBow1G5827 Salvia bowleyana HOM05D006578 ORTHO05D008100 2.7e-10 69.3 90 48.9
Nn4g25270 Nelumbo nucifera HOM05D006578 ORTHO05D008100 6.0e-10 68.2 126 41.3
Pp3c11_19730 Physcomitrium patens HOM05D006578 ORTHO05D008100 1.3e-09 67.0 94 38.3
Hma1.2p1_0359F.1_g135240 Hydrangea macrophylla HOM05D006578 ORTHO05D008100 8.7e-09 64.3 34 82.4
Mapoly0067s0043 Marchantia polymorpha HOM05D006578 ORTHO05D008100 9.6e-08 60.8 93 36.6
Sabra10G0172600 Salix brachista HOM05D006578 ORTHO05D008100 4.8e-07 58.5 42 61.9
SMO146G0113 Selaginella moellendorffii HOM05D006578 ORTHO05D008100 6.9e-06 54.7 107 34.6


User provided reference genes

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