Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 2.0e-104 382.5 196 100.0
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 1.3e-71 273.5 187 79.7
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 1.5e-67 260.0 180 77.8
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 7.3e-67 257.7 197 74.6
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 6.2e-66 254.6 184 74.5
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 1.8e-65 253.1 196 75.0
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 1.2e-64 250.4 157 79.0
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 7.5e-64 247.7 157 77.7
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 2.2e-63 246.1 157 80.3
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 8.3e-63 244.2 156 78.8
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 8.3e-63 244.2 157 80.3
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 1.1e-62 243.8 157 78.3
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 1.4e-62 243.4 157 77.7
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 1.9e-62 243.0 218 62.4
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 4.1e-62 241.9 157 75.2
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 4.1e-62 241.9 156 78.2
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 7.1e-62 241.1 157 79.0
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 1.2e-61 240.4 156 76.9
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 1.2e-61 240.4 157 74.5
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 1.6e-61 240.0 157 75.2
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 2.1e-61 239.6 159 77.4
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 2.1e-61 239.6 157 77.1
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 3.5e-61 238.8 157 77.7
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 4.6e-61 238.4 196 68.9
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 4.6e-61 238.4 157 77.7
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 6.0e-61 238.0 223 60.5
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.0e-60 237.3 156 76.3
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 1.3e-60 236.9 218 59.6
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 1.3e-60 236.9 157 79.0
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.7e-60 236.5 157 73.2
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 2.3e-60 236.1 157 77.1
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 2.3e-60 236.1 156 74.4
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 2.3e-60 236.1 157 73.9
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 3.0e-60 235.7 217 61.3
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 8.6e-60 234.2 157 73.9
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 8.6e-60 234.2 156 75.6
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 8.6e-60 234.2 155 74.8
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 1.5e-59 233.4 156 73.1
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 1.5e-59 233.4 157 73.2
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 1.9e-59 233.0 157 73.2
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 2.5e-59 232.6 185 67.0
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 2.5e-59 232.6 156 74.4
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 3.3e-59 232.3 154 76.6
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 3.3e-59 232.3 156 74.4
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 4.3e-59 231.9 157 70.7
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 4.3e-59 231.9 156 72.4
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 4.3e-59 231.9 156 74.4
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 9.5e-59 230.7 157 73.9
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 9.5e-59 230.7 156 73.1
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 9.5e-59 230.7 157 73.2
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.6e-58 229.9 157 70.1
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.1e-58 229.6 157 70.1
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.1e-58 229.6 157 73.2
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.1e-58 229.6 157 73.2
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 2.1e-58 229.6 156 73.7
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 2.1e-58 229.6 156 73.7
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 2.8e-58 229.2 194 63.4
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 3.6e-58 228.8 157 69.4
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 4.7e-58 228.4 157 72.6
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 4.7e-58 228.4 174 71.8
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 6.2e-58 228.0 203 61.1
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 6.2e-58 228.0 156 72.4
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 1.1e-57 227.3 188 65.4
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 1.4e-57 226.9 187 65.8
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 1.8e-57 226.5 156 73.1
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 2.4e-57 226.1 156 70.5
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 3.1e-57 225.7 183 65.6
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 5.2e-57 224.9 156 71.2
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 6.8e-57 224.6 157 68.8
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 6.8e-57 224.6 146 76.0
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 8.9e-57 224.2 196 62.2
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 1.2e-56 223.8 156 71.8
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 1.2e-56 223.8 225 56.4
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 1.5e-56 223.4 216 60.2
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 2.6e-56 222.6 156 68.6
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.6e-56 222.6 183 63.9
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 2.6e-56 222.6 183 63.9
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 5.8e-56 221.5 157 69.4
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 7.6e-56 221.1 157 70.1
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 1.3e-55 220.3 217 55.8
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.2e-55 219.5 190 62.1
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 2.2e-55 219.5 157 70.1
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 3.8e-55 218.8 152 69.7
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 3.8e-55 218.8 204 60.3
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 3.8e-55 218.8 149 73.8
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 4.9e-55 218.4 154 67.5
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 4.9e-55 218.4 156 66.0
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 6.4e-55 218.0 206 57.3
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 6.4e-55 218.0 147 71.4
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 6.4e-55 218.0 154 68.2
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 8.4e-55 217.6 172 65.7
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 8.4e-55 217.6 152 68.4
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.1e-54 217.2 156 65.4
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 1.1e-54 217.2 194 62.9
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 1.9e-54 216.5 206 57.3
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 1.9e-54 216.5 153 66.7
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 4.2e-54 215.3 156 66.7
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 5.4e-54 214.9 194 59.8
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 5.4e-54 214.9 194 59.8
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 5.4e-54 214.9 194 59.8
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 5.4e-54 214.9 194 58.8
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 7.1e-54 214.5 195 58.5
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 9.2e-54 214.2 215 57.7
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 1.2e-53 213.8 157 67.5
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 1.2e-53 213.8 147 71.4
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 1.6e-53 213.4 194 61.3
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 2.7e-53 212.6 154 64.9
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 1.0e-52 210.7 188 59.0
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 1.0e-52 210.7 188 59.0
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 1.0e-52 210.7 190 59.5
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 5.1e-52 208.4 147 70.1
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 1.1e-51 207.2 167 62.9
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 7.3e-51 204.5 157 67.5
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 6.2e-50 201.4 169 62.7
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 6.2e-50 201.4 169 62.7
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 8.1e-50 201.1 127 81.1
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 1.1e-49 200.7 157 66.9
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 3.1e-49 199.1 156 67.3
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 9.0e-49 197.6 137 71.5
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 9.0e-49 197.6 143 68.5
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 2.0e-48 196.4 153 64.7
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 3.8e-47 192.2 126 77.0
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 4.9e-47 191.8 126 76.2
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 1.9e-46 189.9 134 67.9
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 2.4e-46 189.5 127 74.8
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 4.2e-46 188.7 125 76.0
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 7.1e-46 188.0 161 56.5
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 7.8e-45 184.5 126 71.4
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 1.3e-44 183.7 143 69.2
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 1.5e-43 180.3 194 55.2
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 2.8e-42 176.0 118 73.7
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 1.4e-41 173.7 137 62.8
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 1.2e-40 170.6 191 55.5
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 1.2e-40 170.6 191 55.5
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 7.1e-38 161.4 106 76.4
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 7.1e-38 161.4 106 76.4
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 2.5e-35 152.9 156 50.6
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 6.2e-34 148.3 156 50.0
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 2.4e-33 146.4 147 52.4
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 2.0e-32 143.3 157 47.1
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 2.6e-32 142.9 153 47.7
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 3.4e-32 142.5 108 67.6
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 1.9e-30 136.7 137 51.1
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 2.5e-30 136.3 137 51.8
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 1.8e-28 130.2 132 51.5
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 1.9e-27 126.7 157 50.3
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 1.6e-18 97.1 69 65.2
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 9.4e-14 81.3 180 30.0


User provided reference genes

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