Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 2067.0 1082 100.0
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1853.6 1088 86.2
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1837.4 1025 89.9
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1830.5 1088 85.0
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1828.9 1055 87.2
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1814.3 1033 88.2
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1802.7 1027 88.1
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1785.4 1006 88.9
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1765.0 1016 87.3
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1733.0 1023 83.8
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1732.2 1024 83.3
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1731.8 1028 83.4
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1731.1 1023 83.7
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1729.5 1012 84.1
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1728.8 1013 84.4
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1728.8 1018 84.3
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1725.7 1013 84.0
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1724.9 1012 83.8
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1723.0 1027 83.0
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1722.6 1023 83.2
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1721.4 1021 83.2
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1721.1 1020 83.9
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1716.8 1011 83.4
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1712.2 1023 83.2
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1711.0 1025 82.4
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1702.2 1011 83.4
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1702.2 1033 81.9
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1701.8 1014 83.1
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1701.8 1014 83.4
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1700.3 1021 82.8
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1698.7 1012 82.3
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1697.2 1021 81.7
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1697.2 1026 81.3
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1696.4 1026 82.7
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1692.2 1012 82.3
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1691.4 1020 82.2
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1689.9 1020 81.7
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1689.9 1014 82.1
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1683.7 1013 81.0
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1682.9 1057 80.3
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1680.6 1039 80.8
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1680.2 1011 82.1
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1679.1 1022 80.7
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1676.4 1032 80.3
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1673.7 1058 78.6
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1672.9 1013 81.7
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1671.0 1007 81.6
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1666.0 1012 80.9
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1659.8 1020 80.6
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1659.4 1026 79.5
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1657.5 1111 75.1
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1655.6 1020 80.3
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1651.3 1028 79.0
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1650.6 1017 79.8
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1648.3 1028 78.8
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1647.9 1036 78.2
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1647.5 1028 79.0
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1647.5 1028 78.9
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1646.7 913 90.0
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1644.0 1005 80.1
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1640.9 984 80.5
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1637.1 1006 79.3
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1635.9 1006 79.2
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1632.8 1005 79.2
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1632.8 1011 79.3
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1632.5 1006 79.1
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1629.4 1003 79.4
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1629.0 1028 78.4
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1626.7 1028 77.5
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1623.6 1044 77.2
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1622.8 1004 78.8
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1622.1 1005 79.1
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1619.8 1021 78.7
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1619.0 1007 78.4
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1619.0 1005 78.7
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1617.8 1005 78.7
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1617.1 1005 78.9
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1617.1 1007 78.1
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1617.1 1005 78.8
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1616.7 1020 77.4
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1616.3 1007 78.2
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1616.3 1006 78.4
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1615.1 1010 77.5
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1614.0 1006 78.1
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1612.4 1010 77.8
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1612.0 1010 77.8
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1609.0 1020 78.1
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1606.7 1005 77.9
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1603.6 987 79.1
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1603.2 1020 76.9
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1601.3 1012 78.3
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1598.2 999 78.6
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1598.2 1028 77.4
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1597.4 1004 78.1
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1597.0 993 78.7
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1592.8 992 78.4
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1590.5 1011 77.2
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1587.8 1128 71.6
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1587.0 1004 78.7
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1586.2 1070 73.5
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1585.5 1004 78.1
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1582.8 1101 73.0
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1579.7 1052 75.6
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1561.2 1017 77.1
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1544.6 1055 73.7
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1534.6 1009 74.9
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1501.9 1042 73.4
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1483.0 970 75.5
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1483.0 870 83.8
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1474.9 1024 73.9
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1447.2 1003 69.9
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1442.9 939 75.5
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1427.9 802 88.8
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1408.3 1008 67.9
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1362.1 958 69.5
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1345.5 1032 68.4
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1343.2 1032 68.2
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1261.1 1026 61.7
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1238.8 1013 63.4
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1179.1 766 75.7
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1161.0 692 82.8
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1153.7 749 77.0
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1152.5 1007 55.8
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1124.4 1028 55.3
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1123.2 723 76.6
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1090.5 989 54.9
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 1.1e-300 1036.9 740 70.1
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 1.3e-293 1013.4 881 59.9
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 2.8e-269 932.6 812 61.0
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 7.4e-262 907.9 778 59.0
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 4.1e-260 902.1 580 75.3
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.1e-254 884.0 597 75.0
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 8.0e-240 834.7 967 45.0
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 3.2e-212 743.0 647 59.8
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.3e-210 736.9 672 56.4
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 4.9e-205 719.2 693 54.4
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.5e-198 697.6 393 85.8
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 7.6e-174 615.5 354 83.6
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 3.2e-172 610.1 408 74.3
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.2e-171 608.2 533 62.7
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 3.3e-169 600.1 431 72.2
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 4.8e-160 569.7 346 84.1
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 1.3e-157 561.6 407 71.7
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.3e-157 561.6 1031 37.1
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 7.2e-148 529.3 394 64.0
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 2.6e-134 484.2 394 63.7
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 9.7e-129 465.7 310 73.5
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.1e-127 462.2 330 69.7
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 9.4e-124 449.1 353 64.6
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.4e-111 408.7 989 29.7
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 4.1e-103 380.6 957 28.6
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 4.6e-102 377.1 228 82.5
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 3.0e-101 374.4 227 81.5
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 7.5e-97 359.8 961 28.2
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 1.4e-90 339.0 903 30.5
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 8.4e-80 303.1 154 89.0
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.9e-55 222.2 222 51.8
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 2.4e-55 221.9 332 36.4
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 2.1e-54 218.8 310 44.8
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 3.0e-53 214.9 862 23.7
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 8.4e-48 196.8 220 53.6
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 9.3e-47 193.4 124 78.2
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 2.8e-43 181.8 152 58.6
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 2.8e-43 181.8 144 65.3
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 6.9e-42 177.2 152 58.6
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 8.5e-40 170.2 273 39.6
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 2.2e-35 155.6 125 64.8
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 3.7e-35 154.8 149 55.0
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 1.4e-34 152.9 461 27.3
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 1.7e-32 146.0 162 43.8
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 9.4e-31 140.2 429 26.8
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 4.2e-23 114.8 112 50.9
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 9.4e-23 113.6 81 66.7
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 2.2e-19 102.4 98 56.1
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 1.1e-18 100.1 259 25.1
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 7.7e-17 94.0 83 57.8
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 1.7e-16 92.8 116 50.0
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 9.4e-15 87.0 51 78.4
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 2.3e-13 82.4 71 57.7
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 2.0e-09 69.3 56 60.7
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 2.7e-09 68.9 36 91.7
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 6.5e-08 64.3 45 66.7
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 4.2e-07 61.6 77 41.6
ClCG02G005830 Citrullus lanatus HOM05D003855 ORTHO05D004722 8.0e-06 57.4 41 63.4


User provided reference genes

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