Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 1.8e-25 118.6 67 100.0
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 4.5e-16 87.4 67 82.1
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 7.6e-16 86.7 65 78.5
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 1.3e-15 85.9 68 77.9
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 1.3e-15 85.9 66 75.8
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 2.9e-15 84.7 68 77.9
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 2.9e-15 84.7 65 78.5
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 1.6e-13 79.0 66 72.7
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.1e-13 78.6 62 72.6
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 2.7e-13 78.2 63 71.4
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 3.5e-13 77.8 65 72.3
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 3.5e-13 77.8 60 73.3
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 4.6e-13 77.4 62 77.4
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 7.9e-13 76.6 60 71.7
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 7.9e-13 76.6 56 75.0
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 7.9e-13 76.6 65 69.2
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 1.3e-12 75.9 65 75.4
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 1.3e-12 75.9 68 70.6
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 1.8e-12 75.5 60 73.3
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 1.8e-12 75.5 63 69.8
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 1.8e-12 75.5 59 71.2
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 2.3e-12 75.1 62 72.6
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 2.3e-12 75.1 66 72.7
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 3.9e-12 74.3 66 72.7
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 5.1e-12 73.9 50 86.0
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 5.1e-12 73.9 57 71.9
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 5.1e-12 73.9 48 85.4
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 5.1e-12 73.9 48 85.4
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 8.7e-12 73.2 62 74.2
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 8.7e-12 73.2 62 74.2
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 1.9e-11 72.0 66 68.2
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 1.9e-11 72.0 60 68.3
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 2.5e-11 71.6 56 76.8
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 2.5e-11 71.6 67 68.7
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 2.5e-11 71.6 63 69.8
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 3.3e-11 71.2 57 70.2
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 3.3e-11 71.2 57 73.7
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 3.3e-11 71.2 57 70.2
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 4.3e-11 70.9 64 70.3
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 4.3e-11 70.9 67 65.7
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 4.3e-11 70.9 67 68.7
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 4.3e-11 70.9 62 69.4
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 5.6e-11 70.5 56 75.0
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 7.4e-11 70.1 55 72.7
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 9.6e-11 69.7 49 83.7
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 9.6e-11 69.7 54 75.9
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 1.3e-10 69.3 60 70.0
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 1.3e-10 69.3 63 71.4
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 1.6e-10 68.9 55 74.5
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.6e-10 68.9 56 71.4
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 1.6e-10 68.9 61 68.9
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 2.1e-10 68.6 49 81.6
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 2.8e-10 68.2 48 79.2
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 3.7e-10 67.8 48 83.3
Lj3g0027829 Lotus japonicus HOM05D005458 ORTHO05D005672 3.7e-10 67.8 51 74.5
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 3.7e-10 67.8 55 70.9
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 4.8e-10 67.4 46 78.3
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 4.8e-10 67.4 65 63.1
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 4.8e-10 67.4 61 67.2
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 6.2e-10 67.0 47 78.7
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 6.2e-10 67.0 50 78.0
FAN15G3619 Fragaria x ananassa HOM05D005458 ORTHO05D005672 8.2e-10 66.6 65 66.2
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 8.2e-10 66.6 48 81.2
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 1.1e-09 66.2 63 66.7
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 1.4e-09 65.9 46 78.3
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 1.4e-09 65.9 48 81.2
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.4e-09 65.9 66 62.1
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 1.8e-09 65.5 68 63.2
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 1.8e-09 65.5 66 65.2
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 1.8e-09 65.5 48 77.1
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 1.8e-09 65.5 55 70.9
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 1.8e-09 65.5 48 77.1
ClCG09G008920 Citrullus lanatus HOM05D001590 ORTHO05D005672 2.4e-09 65.1 54 66.7
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 2.4e-09 65.1 48 77.1
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 2.4e-09 65.1 45 84.4
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 2.4e-09 65.1 70 62.9
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 2.4e-09 65.1 49 77.6
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 2.4e-09 65.1 49 77.6
MD05G1174200 Malus domestica HOM05D005458 ORTHO05D005672 2.4e-09 65.1 65 61.5
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 2.4e-09 65.1 61 65.6
VMungo0331G1336 Vigna mungo HOM05D005458 ORTHO05D005672 2.4e-09 65.1 61 65.6
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 3.1e-09 64.7 49 77.6
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 3.1e-09 64.7 48 75.0
CiPaw.03G148500 Carya illinoinensis HOM05D005458 ORTHO05D005672 4.0e-09 64.3 63 61.9
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 4.0e-09 64.3 56 67.9
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 5.3e-09 63.9 47 78.7
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 5.3e-09 63.9 67 65.7
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 6.9e-09 63.5 51 70.6
Phvul.010G019201 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 6.9e-09 63.5 88 51.1
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 9.0e-09 63.2 48 77.1
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 1.2e-08 62.8 48 77.1
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.5e-08 62.4 60 66.7
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 1.5e-08 62.4 48 77.1
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 1.5e-08 62.4 48 77.1
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 1.5e-08 62.4 48 77.1
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 1.5e-08 62.4 57 64.9
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 2.0e-08 62.0 66 65.2
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 2.6e-08 61.6 45 77.8
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 4.5e-08 60.8 60 63.3
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 7.6e-08 60.1 66 60.6
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.0e-07 59.7 54 63.0
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 1.3e-07 59.3 54 70.4
Manes.03G147401 Manihot esculenta HOM05D005458 ORTHO05D005672 1.7e-07 58.9 66 56.1
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 1.7e-07 58.9 59 64.4
Aa31LG9G4030 Aethionema arabicum HOM05D005458 ORTHO05D005672 2.2e-07 58.5 44 77.3
arahy.Tifrunner.gnm1.ann1.U1G5UA Arachis hypogaea HOM05D005458 ORTHO05D005672 2.9e-07 58.2 42 76.2
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 3.8e-07 57.8 59 64.4
BcaB04g17662 Brassica carinata HOM05D005458 ORTHO05D005672 4.9e-07 57.4 45 75.6
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 4.9e-07 57.4 45 75.6
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 6.5e-07 57.0 65 61.5
Migut.N00389 Erythranthe guttata HOM05D005458 ORTHO05D005672 8.4e-07 56.6 66 60.6
COL.COLO4_12105 Corchorus olitorius HOM05D001094 ORTHO05D001050 1.1e-06 56.2 42 73.8
Dinv27235 Davidia involucrata HOM05D005458 ORTHO05D005672 1.1e-06 56.2 52 69.2
Os11g0425600 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 1.9e-06 55.5 44 75.0
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 2.5e-06 55.1 45 68.9
Cre06.g278238 Chlamydomonas reinhardtii HOM05D005458 ORTHO05D005672 2.5e-06 55.1 56 67.9
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 2.5e-06 55.1 59 59.3
Medtr8g013640 Medicago truncatula HOM05D005458 ORTHO05D005672 2.5e-06 55.1 58 56.9
Sp7g11280 Schrenkiella parvula HOM05D017066 ORTHO05D005672 4.2e-06 54.3 43 74.4
Psat4g203440 Pisum sativum HOM05D005458 ORTHO05D005672 7.1e-06 53.5 57 56.1


User provided reference genes

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