Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 6.1e-118 427.6 224 100.0
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 1.9e-87 326.2 228 78.5
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 1.8e-85 319.7 226 77.0
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 1.8e-85 319.7 227 75.8
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 6.8e-85 317.8 225 75.6
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 9.8e-84 313.9 226 75.7
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 4.6e-81 305.1 227 73.6
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 1.7e-80 303.1 229 74.7
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 1.3e-75 287.0 224 70.5
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 3.5e-73 278.9 226 69.9
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 3.5e-73 278.9 226 69.9
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 1.5e-68 263.5 226 63.3
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 2.6e-68 262.7 221 65.2
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 4.4e-68 261.9 231 62.8
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 1.3e-67 260.4 223 62.8
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 2.2e-67 259.6 221 63.8
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 1.9e-66 256.5 222 64.4
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 2.4e-66 256.1 232 62.5
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 3.2e-66 255.8 223 61.9
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 6.6e-64 248.1 215 60.9
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 6.6e-64 248.1 235 59.1
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 1.9e-63 246.5 217 62.2
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 1.9e-63 246.5 238 56.3
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 1.6e-62 243.4 194 65.5
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 8.1e-62 241.1 192 66.7
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 1.1e-61 240.7 193 64.2
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 1.4e-61 240.4 206 61.7
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 1.4e-61 240.4 227 58.6
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 1.8e-61 240.0 215 60.5
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 4.0e-61 238.8 204 60.8
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 4.0e-61 238.8 206 62.6
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 5.2e-61 238.4 206 61.2
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 8.9e-61 237.7 203 62.1
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 1.2e-60 237.3 195 64.1
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 2.0e-60 236.5 196 61.2
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 2.0e-60 236.5 195 64.1
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 7.6e-60 234.6 215 59.5
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 1.7e-59 233.4 228 60.1
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 2.2e-59 233.0 194 63.9
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 6.4e-59 231.5 234 55.6
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 1.9e-58 229.9 222 56.3
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 2.1e-57 226.5 213 57.3
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 2.1e-57 226.5 202 57.4
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 2.7e-57 226.1 215 58.1
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 2.7e-57 226.1 200 58.5
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 2.7e-57 226.1 183 62.3
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 6.0e-57 224.9 200 58.0
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 1.3e-56 223.8 195 60.0
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 1.7e-56 223.4 201 56.7
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 2.3e-56 223.0 188 62.2
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 3.9e-56 222.2 193 59.6
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 5.1e-56 221.9 218 55.0
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 8.6e-56 221.1 200 64.5
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 1.5e-55 220.3 196 59.2
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 1.5e-55 220.3 163 63.8
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 1.9e-55 219.9 192 60.4
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 2.5e-55 219.5 182 61.5
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 3.3e-55 219.2 232 53.9
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 7.3e-55 218.0 132 84.1
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 7.3e-55 218.0 216 55.1
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 3.6e-54 215.7 218 54.6
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 6.2e-54 214.9 231 53.7
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 8.1e-54 214.5 192 59.9
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 8.1e-54 214.5 192 59.9
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 8.1e-54 214.5 189 58.7
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 1.1e-53 214.2 192 59.4
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 1.4e-53 213.8 189 58.2
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 1.8e-53 213.4 173 65.9
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 2.4e-53 213.0 221 53.4
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 2.4e-53 213.0 192 60.4
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 3.1e-53 212.6 192 59.4
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 3.1e-53 212.6 212 55.2
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 4.0e-53 212.2 227 52.0
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 3.4e-52 209.1 192 58.9
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 1.3e-51 207.2 172 59.3
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 1.9e-50 203.4 166 65.1
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 3.2e-50 202.6 201 57.7
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 1.6e-49 200.3 178 56.7
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 1.9e-47 193.4 193 57.0
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 5.6e-47 191.8 153 63.4
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 9.6e-47 191.0 171 59.1
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 2.8e-46 189.5 220 49.5
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 7.6e-44 181.4 189 51.9
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 1.3e-43 180.6 189 51.3
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 2.9e-43 179.5 271 43.9
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 1.1e-42 177.6 173 50.9
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 7.9e-41 171.4 224 47.8
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 1.3e-40 170.6 229 43.7
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 6.6e-40 168.3 179 54.2
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.1e-39 167.5 213 48.8
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 5.6e-39 165.2 174 51.1
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 9.9e-36 154.5 168 50.6
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 3.8e-35 152.5 189 46.0
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 8.4e-35 151.4 178 50.6
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 4.6e-33 145.6 171 44.4
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 1.1e-31 141.0 202 42.1
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 3.7e-30 136.0 135 51.9
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 2.0e-28 130.2 98 64.3
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.6e-25 120.6 89 67.4
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 8.7e-24 114.8 89 62.9
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 2.0e-20 103.6 111 51.4
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 1.3e-19 100.9 98 55.1
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 1.7e-19 100.5 111 48.6
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 2.3e-16 90.1 219 30.6
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 8.5e-11 71.6 55 61.8
Dinv39425 Davidia involucrata HOM05D002064 ORTHO05D002118 2.0e-07 60.5 46 58.7
SGA_v2.0_scaffold54G19517 Striga asiatica HOM05D007221 ORTHO05D009204 3.3e-07 59.7 105 39.0


User provided reference genes

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