Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 2293.1 1198 100.0
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1816.2 1127 83.3
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1810.4 1125 83.3
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1808.1 1136 83.1
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1791.2 1131 81.8
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1756.1 1145 81.1
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1756.1 1145 81.1
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1744.6 1131 80.7
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1740.7 1131 80.7
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1723.4 1032 85.9
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1679.8 1069 81.5
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1639.8 1126 77.4
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1624.4 1133 73.6
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1620.1 1137 74.2
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1619.4 1134 73.9
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1610.1 1142 74.5
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1608.2 1138 73.6
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1605.9 1135 74.7
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1605.5 1130 73.4
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1604.0 1130 73.3
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1603.6 1127 73.0
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1602.8 1129 73.5
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1601.6 1138 73.4
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1601.3 1148 72.2
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1599.3 1147 72.1
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1598.2 1149 72.1
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1597.0 1131 72.5
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1593.9 1131 72.8
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1592.8 1134 73.5
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1589.3 1135 72.3
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1587.8 1130 72.5
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1586.2 1135 72.2
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1582.8 1134 72.7
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1582.8 1143 72.1
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1580.5 1132 71.9
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1580.1 1135 72.3
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1579.7 1135 72.0
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1579.3 1135 71.6
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1577.0 1139 71.7
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1575.8 1131 72.9
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1570.1 1138 72.5
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1570.1 1141 71.7
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1568.9 1137 71.6
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1564.7 1133 71.8
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1562.4 1133 72.3
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1562.0 1140 71.5
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1557.7 1128 71.5
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1554.7 1129 71.3
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1553.5 1128 70.7
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1552.0 1128 70.7
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1545.0 1135 70.6
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1543.1 1129 70.2
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1541.9 1180 68.7
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1538.1 1143 69.6
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1531.5 1104 71.9
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1530.8 1127 70.5
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1530.0 1137 68.8
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1529.6 1139 70.1
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1523.5 1135 69.9
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1522.7 1139 69.5
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1516.1 1138 69.5
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1511.9 1130 68.6
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1510.0 1138 69.2
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1508.4 1127 68.9
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1507.3 1130 69.7
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1506.5 888 86.8
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1501.1 1134 69.3
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1500.3 1136 68.8
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1497.3 1133 68.8
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1494.6 1121 69.8
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1494.2 1129 69.4
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1487.2 1129 68.0
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1483.8 1029 73.8
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1481.8 1134 67.4
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1481.1 1129 67.8
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1475.7 1142 67.6
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1470.7 1129 67.4
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1469.1 1098 69.4
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1468.4 1139 66.5
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1453.0 1130 66.0
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1452.6 1133 66.2
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1449.9 1132 66.3
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1445.3 1131 66.3
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1444.9 1131 66.3
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1443.3 1134 66.0
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1439.1 1130 66.0
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1435.2 1133 66.0
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1434.1 1133 66.0
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1433.7 1133 66.2
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1431.8 1133 66.5
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1426.4 1131 65.3
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1423.7 1131 65.1
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1419.4 1012 73.6
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1419.1 1070 67.3
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1418.7 1132 64.8
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1414.4 1071 67.2
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1396.7 921 76.4
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1364.0 1121 65.0
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1340.9 1094 65.1
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1334.3 922 73.3
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1329.7 1069 62.9
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1304.7 1149 61.4
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1271.9 1104 59.9
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1262.7 882 72.4
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1243.4 1065 58.8
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1125.5 826 72.3
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1099.3 935 61.9
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 2.4e-306 1055.8 1069 51.9
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 4.0e-301 1038.5 794 70.0
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 3.3e-295 1018.8 1074 50.3
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 6.7e-288 994.6 763 66.6
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 4.8e-286 988.4 669 73.7
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 4.9e-283 978.4 1081 49.1
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 3.0e-280 969.1 1068 46.9
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 6.1e-233 812.0 937 50.8
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 6.0e-220 768.8 609 68.1
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 1.5e-207 727.6 628 61.0
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 3.7e-206 723.0 1081 40.6
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 8.2e-153 545.8 366 74.9
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 7.2e-133 479.6 425 62.8
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 2.3e-123 448.0 430 58.8
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 3.8e-118 430.6 353 61.8
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 7.1e-96 356.7 1232 27.8
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 8.9e-91 339.7 1143 28.3
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 2.1e-84 318.5 314 57.3
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 1.8e-83 315.5 319 58.6
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 2.9e-81 308.1 363 46.8
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 4.6e-71 274.2 337 54.0
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 2.1e-63 248.8 326 44.2
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 9.0e-59 233.4 321 47.7
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 9.7e-29 133.7 110 70.0
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.7e-28 132.9 642 22.4
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 2.2e-28 132.5 100 69.0
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 2.6e-26 125.6 160 53.1
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 1.9e-24 119.4 86 75.6
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 2.5e-24 119.0 69 75.4
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 7.2e-24 117.5 68 75.0
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 1.6e-23 116.3 86 74.4
Lj2g0025677 Lotus japonicus HOM05D005483 ORTHO05D007091 9.1e-11 73.9 79 57.0


User provided reference genes

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