Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 1.6e-135 486.1 241 100.0
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 7.0e-104 380.9 242 76.9
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 2.7e-103 379.0 242 75.6
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 5.0e-102 374.8 243 78.2
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 2.1e-100 369.4 243 76.5
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 4.7e-100 368.2 243 77.8
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 4.7e-100 368.2 243 76.1
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 4.4e-98 361.7 246 72.4
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.7e-97 359.8 246 72.8
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.6e-95 351.7 246 72.4
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 3.9e-94 348.6 246 72.4
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 3.9e-94 348.6 246 72.4
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 7.5e-90 334.3 248 71.0
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 8.6e-86 320.9 251 66.9
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 4.7e-84 315.1 241 67.2
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 6.8e-83 311.2 244 65.2
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 7.6e-82 307.8 245 64.5
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 4.9e-81 305.1 246 64.6
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 1.9e-80 303.1 244 63.9
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 1.1e-77 293.9 244 61.1
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 9.6e-77 290.8 236 61.0
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 1.6e-76 290.0 247 58.7
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.8e-75 286.6 240 58.8
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 6.8e-75 284.6 243 60.1
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 2.6e-74 282.7 238 59.7
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 4.4e-74 282.0 244 57.0
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.3e-73 280.4 233 56.7
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 4.9e-73 278.5 236 61.4
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 4.9e-73 278.5 238 58.0
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 8.4e-73 277.7 219 61.2
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 1.9e-72 276.6 202 65.3
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 3.2e-72 275.8 211 63.5
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 7.1e-72 274.6 238 58.4
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 4.6e-71 271.9 239 58.2
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 6.0e-71 271.6 219 61.2
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.7e-70 270.0 205 62.9
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 3.0e-70 269.2 220 58.6
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 3.9e-70 268.9 242 57.4
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.5e-69 266.9 244 56.6
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.9e-69 266.5 236 56.8
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 5.6e-69 265.0 234 58.5
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 3.6e-68 262.3 211 62.1
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 4.8e-68 261.9 183 68.3
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.1e-67 260.8 242 55.0
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 1.4e-67 260.4 268 51.5
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 1.8e-67 260.0 247 56.7
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 3.1e-67 259.2 242 52.9
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 3.1e-67 259.2 235 58.3
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 6.9e-67 258.1 199 63.3
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 2.6e-66 256.1 226 58.4
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.6e-66 256.1 193 63.2
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 2.6e-66 256.1 193 63.2
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 4.4e-66 255.4 193 63.2
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 7.6e-66 254.6 235 57.4
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 9.9e-66 254.2 207 60.4
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 1.3e-65 253.8 206 59.7
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 2.2e-65 253.1 234 56.8
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 3.8e-65 252.3 178 65.2
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 3.8e-65 252.3 235 54.9
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 3.8e-65 252.3 207 60.4
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.9e-65 251.9 234 54.3
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 6.4e-65 251.5 188 64.4
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 1.4e-64 250.4 197 61.9
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 3.2e-64 249.2 219 58.9
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 3.2e-64 249.2 219 58.9
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 5.4e-64 248.4 212 60.4
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 5.4e-64 248.4 234 53.4
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 7.1e-64 248.1 240 52.5
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 9.3e-64 247.7 185 64.9
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 1.6e-63 246.9 237 53.6
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 1.6e-63 246.9 203 58.1
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 2.7e-63 246.1 191 63.4
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.0e-63 245.0 238 52.5
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 7.9e-63 244.6 189 63.5
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 7.9e-63 244.6 189 63.5
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 7.9e-63 244.6 189 63.5
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 1.3e-62 243.8 180 66.7
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.3e-62 243.8 206 59.7
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 1.7e-62 243.4 206 58.7
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.7e-62 243.4 202 60.4
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 3.9e-62 242.3 200 62.0
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 5.1e-62 241.9 205 58.0
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 5.1e-62 241.9 160 74.4
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 5.1e-62 241.9 184 63.6
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 5.1e-62 241.9 241 50.6
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.1e-61 240.7 240 51.2
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.9e-61 240.0 202 57.9
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 4.3e-61 238.8 200 59.0
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 5.6e-61 238.4 206 57.8
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 9.6e-61 237.7 175 66.9
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 1.3e-60 237.3 208 57.2
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.6e-60 236.9 201 56.2
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.1e-59 234.2 203 56.2
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 3.1e-59 232.6 205 55.1
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 4.0e-59 232.3 176 63.1
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 4.0e-59 232.3 232 53.4
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 6.9e-59 231.5 268 47.0
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 9.0e-59 231.1 180 62.8
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 7.6e-58 228.0 235 52.8
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 4.9e-57 225.3 149 71.8
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 6.4e-57 224.9 149 71.1
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 2.4e-56 223.0 249 50.6
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 3.2e-56 222.6 173 62.4
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.0e-54 216.1 197 57.4
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 3.9e-54 215.7 148 70.3
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.1e-54 215.3 145 70.3
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 6.7e-54 214.9 231 51.5
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 8.7e-54 214.5 134 76.1
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.5e-53 213.0 162 66.7
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.3e-53 212.6 145 69.0
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 3.3e-53 212.6 139 68.3
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 7.4e-53 211.5 181 56.4
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 2.1e-52 209.9 175 64.6
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 4.8e-52 208.8 197 55.3
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 8.1e-52 208.0 141 70.2
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.4e-51 207.2 179 54.7
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.4e-51 206.5 179 55.3
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 3.1e-51 206.1 139 68.3
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 4.0e-51 205.7 139 69.1
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.9e-51 204.9 199 51.3
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 6.9e-51 204.9 179 54.2
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 1.0e-49 201.1 192 56.2
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 1.3e-49 200.7 152 59.9
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 8.4e-49 198.0 157 62.4
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 3.2e-48 196.1 119 78.2
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 5.5e-48 195.3 181 55.2
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 7.9e-47 191.4 154 57.1
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.5e-45 186.4 155 56.1
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 8.2e-44 181.4 179 52.0
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 1.1e-43 181.0 185 48.6
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 4.1e-43 179.1 245 41.2
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.7e-41 173.7 139 54.7
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 1.1e-40 171.0 199 48.7
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 1.4e-40 170.6 244 41.0
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.4e-40 170.6 166 57.8
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.5e-40 169.9 139 56.8
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 5.5e-40 168.7 169 50.3
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 7.2e-40 168.3 149 54.4
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.5e-34 149.1 206 38.8
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.0e-33 147.9 144 56.9
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 5.5e-32 142.1 180 43.3
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 2.7e-31 139.8 141 54.6
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 5.9e-26 122.1 159 45.3
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 2.9e-25 119.8 125 48.8
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 1.8e-19 100.5 79 59.5
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.1e-19 99.8 150 37.3
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 1.0e-17 94.7 158 34.2
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 2.7e-15 86.7 131 35.9
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 2.6e-13 80.1 83 55.4
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 7.5e-13 78.6 147 32.0
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 1.8e-11 73.9 133 34.6
QL02p051406 Quercus lobata HOM05D004693 ORTHO05D005545 3.1e-11 73.2 96 38.5
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.3e-11 72.4 82 42.7
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.3e-09 67.8 152 30.3
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.0e-09 65.9 80 46.2
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 8.5e-09 65.1 124 28.2
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 8.0e-07 58.5 114 28.9
FAN08G1603 Fragaria x ananassa HOM05D004693 ORTHO05D005545 5.2e-06 55.8 93 32.3


User provided reference genes

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