Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 2.4e-96 355.5 183 100.0
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 6.4e-49 198.0 175 66.3
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 1.2e-47 193.7 175 66.3
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 4.6e-47 191.8 206 61.2
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 3.0e-46 189.1 165 64.2
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 1.8e-43 179.9 165 64.8
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 4.0e-43 178.7 209 56.5
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 9.0e-43 177.6 206 57.8
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 1.5e-42 176.8 206 58.3
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.3e-41 173.7 168 60.7
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 2.2e-41 172.9 217 55.3
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 1.9e-37 159.8 198 55.6
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 5.6e-37 158.3 169 59.2
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 9.0e-35 151.0 181 55.8
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 5.8e-34 148.3 204 47.5
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 5.8e-34 148.3 203 47.8
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 9.9e-34 147.5 169 52.1
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 1.3e-33 147.1 191 53.4
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 1.7e-33 146.7 164 57.3
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.2e-33 146.4 162 51.2
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 3.8e-33 145.6 162 51.2
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 6.4e-33 144.8 169 52.1
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 8.4e-33 144.4 162 51.2
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 8.4e-33 144.4 161 57.1
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 1.9e-32 143.3 170 55.3
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 4.2e-32 142.1 193 49.2
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 7.1e-32 141.4 207 45.9
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 1.6e-31 140.2 171 53.2
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 3.5e-31 139.0 171 53.2
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 4.6e-31 138.7 171 52.6
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 4.6e-31 138.7 164 52.4
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 6.0e-31 138.3 170 54.1
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 2.3e-30 136.3 166 53.0
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 3.3e-29 132.5 171 49.1
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 9.6e-29 131.0 170 48.2
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.1e-28 129.8 169 49.1
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 2.1e-28 129.8 161 47.2
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 2.8e-28 129.4 187 48.7
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 3.7e-28 129.0 171 49.7
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 1.1e-27 127.5 170 51.2
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 1.1e-27 127.5 168 50.6
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 3.1e-27 125.9 161 47.8
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 5.3e-27 125.2 166 45.2
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 5.3e-27 125.2 138 54.3
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 9.0e-27 124.4 161 47.8
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 2.6e-26 122.9 164 45.7
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 2.6e-26 122.9 204 42.2
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 4.5e-26 122.1 204 43.1
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 5.8e-26 121.7 204 42.2
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 5.8e-26 121.7 181 49.2
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 1.3e-25 120.6 163 46.6
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.2e-25 119.8 158 50.0
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 2.9e-25 119.4 155 50.3
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 2.9e-25 119.4 169 46.2
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 2.9e-25 119.4 164 47.6
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 6.4e-25 118.2 176 48.9
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 8.4e-25 117.9 168 50.0
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 1.1e-24 117.5 163 47.9
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.4e-24 117.1 166 45.8
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 1.4e-24 117.1 164 48.2
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 7.1e-24 114.8 139 54.7
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 7.1e-24 114.8 209 44.0
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 3.5e-23 112.5 179 44.7
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 6.0e-23 111.7 164 43.9
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.9e-23 111.3 170 44.1
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 1.3e-22 110.5 163 47.2
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.3e-22 110.5 170 48.2
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.3e-22 110.5 170 48.2
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 1.8e-22 110.2 172 44.8
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 2.3e-22 109.8 176 46.6
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 3.0e-22 109.4 167 42.5
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 3.9e-22 109.0 171 45.6
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 8.7e-22 107.8 182 43.4
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 1.5e-21 107.1 170 41.2
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 1.5e-21 107.1 168 45.8
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 1.9e-21 106.7 166 43.4
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 2.5e-21 106.3 168 44.0
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 3.3e-21 105.9 163 46.6
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 3.3e-21 105.9 200 43.5
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 3.3e-21 105.9 184 43.5
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 9.6e-21 104.4 198 42.9
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.3e-20 104.0 169 48.5
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 1.6e-20 103.6 177 40.1
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.6e-20 103.6 163 46.0
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 2.1e-20 103.2 177 42.4
Phvul.008G132100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 3.7e-20 102.4 86 66.3
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 6.2e-20 101.7 160 45.0
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 6.2e-20 101.7 160 45.0
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 1.4e-19 100.5 166 42.8
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 5.3e-19 98.6 179 41.3
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.7e-17 93.6 200 37.5
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 2.2e-17 93.2 154 38.3
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 3.8e-17 92.4 180 42.8
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 1.1e-16 90.9 161 39.1
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.9e-16 90.1 166 42.2
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 4.2e-16 89.0 158 44.9
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 4.2e-16 89.0 165 43.6
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 5.5e-16 88.6 158 41.8
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 9.3e-16 87.8 135 45.2
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 2.1e-15 86.7 166 40.4
Aqoxy4G01997 Aquilegia oxysepala HOM05D004361 ORTHO05D004706 4.6e-15 85.5 195 34.4
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 7.9e-15 84.7 176 39.2
Dinv20012 Davidia involucrata HOM05D004361 ORTHO05D004706 7.9e-15 84.7 170 39.4
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 1.8e-14 83.6 176 36.9
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 3.0e-14 82.8 176 36.9
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 3.0e-14 82.8 167 37.7
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 3.9e-14 82.4 176 36.9
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 3.9e-14 82.4 161 44.1
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 6.7e-14 81.6 176 36.9
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 6.7e-14 81.6 176 36.9
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 8.7e-14 81.3 177 38.4
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.5e-13 80.5 180 39.4
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 1.5e-13 80.5 177 38.4
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 1.9e-13 80.1 175 38.3
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 2.5e-13 79.7 175 38.9
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 2.5e-13 79.7 177 37.9
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 2.5e-13 79.7 177 37.9
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 3.3e-13 79.3 176 36.9
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 3.3e-13 79.3 176 39.2
CsaV3_6G049270 Cucumis sativus L. HOM05D004361 ORTHO05D004706 3.3e-13 79.3 180 37.8
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 5.7e-13 78.6 176 37.5
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 9.7e-13 77.8 170 37.6
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 9.7e-13 77.8 163 37.4
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 1.6e-12 77.0 184 37.5
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 2.2e-12 76.6 177 37.9
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 4.8e-12 75.5 181 37.6
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 6.3e-12 75.1 183 37.2
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 6.3e-12 75.1 177 36.7
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 6.3e-12 75.1 173 35.3
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 6.3e-12 75.1 179 36.9
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 8.2e-12 74.7 161 35.4
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 8.2e-12 74.7 172 37.8
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 1.4e-11 73.9 177 36.2
SGA_v2.0_scaffold7G03885 Striga asiatica HOM05D004361 ORTHO05D004706 1.8e-11 73.6 145 41.4
arahy.Tifrunner.gnm1.ann1.SFZ90Y Arachis hypogaea HOM05D004361 ORTHO05D004706 2.4e-11 73.2 68 61.8
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 3.1e-11 72.8 119 42.9
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 5.3e-11 72.0 156 35.3
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 9.0e-11 71.2 171 35.1
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 2.9e-09 66.2 150 36.7
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 3.8e-09 65.9 156 35.3
Atru.chr10.2143 Acer truncatum HOM05D004361 ORTHO05D004706 1.1e-08 64.3 181 33.1
HanXRQChr01g0002531 Helianthus annuus HOM05D004361 ORTHO05D004706 1.1e-08 64.3 173 32.9
Nn1g03641 Nelumbo nucifera HOM05D004361 ORTHO05D004706 2.5e-08 63.2 59 61.0
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 5.5e-08 62.0 178 35.4
TPR.G5514 Trifolium pratense HOM05D004361 ORTHO05D004706 5.5e-08 62.0 61 63.9
Ah.09g235360 Amaranthus hybridus HOM05D004361 ORTHO05D004706 1.2e-07 60.8 178 31.5
TPR.G22022 Trifolium pratense HOM05D004361 ORTHO05D004706 1.2e-07 60.8 69 56.5
MBI18_g06808_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 1.6e-07 60.5 150 37.3
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 5.1e-06 55.5 155 35.5


User provided reference genes

Program Settings