Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 3.2e-167 591.7 299 100.0
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 2.1e-129 466.1 304 79.9
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 1.0e-128 463.8 304 79.6
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 6.0e-121 438.0 298 76.5
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 6.0e-121 438.0 300 76.0
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 1.0e-120 437.2 300 75.7
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 1.1e-119 433.7 300 77.7
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 6.2e-118 427.9 298 75.5
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 2.6e-116 422.5 301 75.1
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 1.2e-113 413.7 301 72.8
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 6.7e-112 407.9 309 70.2
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 2.1e-110 402.9 294 72.4
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 8.1e-110 401.0 307 69.4
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 1.5e-108 396.7 311 67.2
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 1.4e-106 390.2 313 67.4
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 1.4e-106 390.2 339 64.0
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 5.5e-106 388.3 302 67.9
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 7.1e-106 387.9 309 68.6
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 2.1e-105 386.3 303 67.3
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 2.7e-105 386.0 302 67.9
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 7.9e-105 384.4 302 67.2
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.8e-104 383.3 300 70.3
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.8e-104 383.3 300 70.3
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 1.8e-104 383.3 285 71.9
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 2.3e-104 382.9 304 67.4
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 6.7e-104 381.3 317 65.3
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 8.7e-104 380.9 303 68.0
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 8.7e-104 380.9 297 69.4
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 7.4e-103 377.9 293 68.9
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 9.6e-103 377.5 293 68.9
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 9.6e-103 377.5 294 69.4
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 1.8e-101 373.2 296 67.2
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 9.0e-101 370.9 306 65.4
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 7.6e-100 367.9 292 68.2
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 1.0e-99 367.5 312 65.1
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 2.9e-99 365.9 276 65.9
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 8.4e-99 364.4 303 63.7
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 1.1e-98 364.0 236 75.0
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 1.4e-98 363.6 297 67.0
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 1.4e-98 363.6 302 65.6
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 2.5e-98 362.8 303 64.4
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 5.5e-98 361.7 312 61.5
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 5.5e-98 361.7 303 64.0
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 7.1e-98 361.3 239 75.7
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 7.1e-98 361.3 312 62.8
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 2.7e-97 359.4 306 64.4
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 7.9e-97 357.8 302 63.2
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 2.3e-96 356.3 297 63.6
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 2.3e-96 356.3 314 63.1
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 2.3e-96 356.3 314 63.1
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 3.0e-96 355.9 305 63.9
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 1.9e-95 353.2 246 71.1
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 5.7e-95 351.7 306 62.4
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 2.2e-94 349.7 259 69.5
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 3.7e-94 349.0 301 63.8
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 3.7e-94 349.0 286 64.0
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 8.2e-94 347.8 291 64.9
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 8.2e-94 347.8 317 63.1
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 1.4e-93 347.1 254 70.9
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 1.4e-93 347.1 227 74.4
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 3.1e-93 345.9 237 73.0
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 1.2e-92 344.0 246 69.9
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 2.6e-92 342.8 310 63.9
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 3.4e-92 342.4 198 83.3
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 7.7e-92 341.3 285 61.1
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 1.7e-91 340.1 223 74.0
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 1.7e-91 340.1 319 59.2
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 2.9e-91 339.3 225 73.3
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 5.0e-91 338.6 274 66.4
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 5.0e-91 338.6 274 66.4
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 6.5e-91 338.2 277 65.7
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 6.5e-91 338.2 284 62.7
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 1.4e-90 337.0 221 72.4
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 1.9e-90 336.7 281 65.1
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 1.9e-90 336.7 315 60.3
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 2.5e-90 336.3 225 72.9
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 3.2e-90 335.9 282 64.9
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 3.2e-90 335.9 293 65.9
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 3.2e-90 335.9 280 63.9
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 1.6e-89 333.6 302 61.9
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 2.1e-89 333.2 233 70.4
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 2.1e-89 333.2 225 69.8
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 2.7e-89 332.8 321 59.5
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 2.3e-88 329.7 286 64.7
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 2.3e-88 329.7 252 66.7
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 3.0e-88 329.3 322 58.1
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 4.3e-87 325.5 307 61.6
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 1.8e-85 320.1 217 69.6
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 4.1e-85 318.9 234 69.7
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 3.4e-84 315.8 241 66.8
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 4.7e-73 278.9 220 60.0
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 7.4e-71 271.6 216 60.2
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 4.8e-70 268.9 241 61.0
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 1.1e-66 257.7 215 55.8
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 2.4e-61 240.0 210 58.1
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 4.5e-60 235.7 211 60.7
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 2.9e-59 233.0 151 74.8
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 4.7e-57 225.7 212 61.8
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 1.5e-55 220.7 249 47.0
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 3.7e-54 216.1 214 57.9
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 3.7e-54 216.1 191 53.9
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 8.3e-54 214.9 173 64.2
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 1.4e-53 214.2 219 46.6
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 3.1e-53 213.0 164 65.9
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 3.3e-50 203.0 149 69.8
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 3.3e-42 176.4 117 73.5
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.6e-41 174.1 162 60.5
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 4.7e-41 172.6 126 68.3
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 1.2e-39 167.9 121 67.8
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 1.7e-38 164.1 160 63.1
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 8.6e-35 151.8 92 76.1
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 3.3e-34 149.8 80 87.5
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 3.3e-34 149.8 80 87.5
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 7.1e-21 105.5 227 29.5
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 3.6e-17 93.2 98 57.1
Cpa.g.sc2150.3 Carica papaya HOM05D006384 ORTHO05D007917 7.8e-12 75.5 56 71.4
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 1.4e-08 64.7 230 23.0
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 1.8e-08 64.3 243 25.9
RcHm_v2.0_Chr4g0411411 Rosa chinensis HOM05D006384 ORTHO05D007917 2.4e-08 63.9 47 70.2
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 9.0e-08 62.0 224 22.3
DCAR_017395 Daucus carota HOM05D006384 ORTHO05D007917 1.2e-07 61.6 40 62.5
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.2e-07 61.6 231 23.4
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 1.5e-07 61.2 241 23.2
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 2.0e-07 60.8 249 23.7
MELO3C032679.2 Cucumis melo HOM05D006384 ORTHO05D007917 2.6e-07 60.5 56 57.1
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 9.9e-07 58.5 168 22.6
FAN14G2601 Fragaria x ananassa HOM05D006384 ORTHO05D007917 9.9e-07 58.5 74 45.9
FAN14G5547 Fragaria x ananassa HOM05D006384 ORTHO05D007917 9.9e-07 58.5 74 45.9
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 9.9e-07 58.5 168 23.8
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 1.3e-06 58.2 168 22.6
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.3e-06 58.2 223 20.2
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 1.3e-06 58.2 235 24.3
TAR374G1213 Trochodendron aralioides HOM05D000928 ORTHO05D000023 6.4e-06 55.8 49 53.1


User provided reference genes

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