Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0002355 Lotus japonicus HOM05D003199 ORTHO05D003528 6.3e-59 231.1 168 100.0
Glyma.19G090000 Glycine max HOM05D003199 ORTHO05D003528 5.2e-29 131.7 175 59.4
CsaV3_3G027140 Cucumis sativus L. HOM05D003199 ORTHO05D003528 3.4e-28 129.0 179 48.6
MELO3C014875.2 Cucumis melo HOM05D003199 ORTHO05D003528 7.5e-28 127.9 180 46.7
ClCG05G013420 Citrullus lanatus HOM05D003199 ORTHO05D003528 3.7e-27 125.6 185 45.4
Glyma.17G181000 Glycine max HOM05D003199 ORTHO05D003528 2.4e-26 122.9 168 53.6
Lj2g0014633 Lotus japonicus HOM05D003199 ORTHO05D003528 4.1e-26 122.1 177 49.2
Sed0014935 Sechium edule HOM05D003199 ORTHO05D003528 9.1e-26 120.9 172 45.9
Gohir.A05G339100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.6e-25 120.2 168 63.7
Gorai.012G087400 Gossypium raimondii HOM05D003199 ORTHO05D003528 1.3e-24 117.1 168 62.5
Gohir.D04G077600 Gossypium hirsutum HOM05D003199 ORTHO05D003528 2.2e-24 116.3 168 62.5
VMungo1383G1719 Vigna mungo HOM05D003199 ORTHO05D003528 2.9e-24 115.9 168 53.6
CANSAT64G0211 Cannabis sativa HOM05D003199 ORTHO05D003528 6.5e-24 114.8 171 62.0
Lalb_Chr24g0403341 Lupinus albus HOM05D003199 ORTHO05D003528 8.5e-24 114.4 165 52.1
Ciclev10016867m.g Citrus clementina HOM05D003199 ORTHO05D003528 7.2e-23 111.3 185 54.1
FAN02G1758 Fragaria x ananassa HOM05D003199 ORTHO05D003528 9.4e-23 110.9 174 58.0
Phvul.004G054500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 1.2e-22 110.5 168 60.1
Manes.15G159800 Manihot esculenta HOM05D003199 ORTHO05D003528 1.6e-22 110.2 166 58.4
Cpa.g.sc1017.1 Carica papaya HOM05D003199 ORTHO05D003528 2.7e-22 109.4 173 57.2
FAN14G1306 Fragaria x ananassa HOM05D003199 ORTHO05D003528 4.7e-22 108.6 174 57.5
AUR62003498 Chenopodium quinoa HOM05D003199 ORTHO05D003528 6.1e-22 108.2 176 42.0
AUR62017813 Chenopodium quinoa HOM05D003199 ORTHO05D003528 6.1e-22 108.2 176 55.7
FAN05G2482 Fragaria x ananassa HOM05D003199 ORTHO05D003528 8.0e-22 107.8 174 57.5
Eucgr.I01653 Eucalyptus grandis HOM05D003199 ORTHO05D003528 1.4e-21 107.1 115 57.4
Prupe.3G305100 Prunus persica HOM05D003199 ORTHO05D003528 1.8e-21 106.7 173 45.1
RcHm_v2.0_Chr2g0175441 Rosa chinensis HOM05D003199 ORTHO05D003528 1.8e-21 106.7 173 56.1
Phvul.001G094500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 3.0e-21 105.9 173 52.0
PGR142G2189 Punica granatum HOM05D003199 ORTHO05D003528 3.0e-21 105.9 170 48.2
Glyma.19G071300 Glycine max HOM05D003199 ORTHO05D003528 4.0e-21 105.5 113 64.6
Ah.03g147440 Amaranthus hybridus HOM05D003199 ORTHO05D003528 5.2e-21 105.1 180 55.6
Glyma.05G077200 Glycine max HOM05D003199 ORTHO05D003528 6.8e-21 104.8 113 52.2
Sabra16G0212600 Salix brachista HOM05D003199 ORTHO05D003528 6.8e-21 104.8 167 41.9
FvH4_6g53290 Fragaria vesca HOM05D003199 ORTHO05D003528 8.8e-21 104.4 178 56.7
Potri.001G331600 Populus trichocarpa HOM05D003199 ORTHO05D003528 8.8e-21 104.4 167 45.5
EL10Ac6g15370 Beta vulgaris HOM05D003199 ORTHO05D003528 1.2e-20 104.0 114 71.1
MD17G1012600 Malus domestica HOM05D003199 ORTHO05D003528 3.4e-20 102.4 169 43.2
CSS0036982 Camellia sinensis var. sinensis HOM05D003199 ORTHO05D003528 4.4e-20 102.1 173 58.4
Ah.02g120420 Amaranthus hybridus HOM05D003199 ORTHO05D003528 1.7e-19 100.1 184 53.8
Nitab4.5_0002911g0010 Nicotiana tabacum HOM05D003199 ORTHO05D003528 1.7e-19 100.1 174 39.7
THA.LOC104825617 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 1.7e-19 100.1 172 54.7
Manes.17G103700 Manihot esculenta HOM05D003199 ORTHO05D003528 2.2e-19 99.8 109 56.0
CAN.G473.92 Capsicum annuum HOM05D003199 ORTHO05D003528 3.7e-19 99.0 111 55.0
Nitab4.5_0000040g0380 Nicotiana tabacum HOM05D003199 ORTHO05D003528 3.7e-19 99.0 164 39.6
Sc07g0004150 Simmondsia chinensis HOM05D003199 ORTHO05D003528 4.9e-19 98.6 174 55.2
QL02p071628 Quercus lobata HOM05D003199 ORTHO05D003528 6.3e-19 98.2 127 53.5
CAN.G1491.4 Capsicum annuum HOM05D003199 ORTHO05D003528 1.1e-18 97.4 120 53.3
Cfa007237 Carpinus fangiana HOM05D003199 ORTHO05D003528 1.1e-18 97.4 114 56.1
HanXRQChr07g0198271 Helianthus annuus HOM05D003199 ORTHO05D003528 1.1e-18 97.4 166 56.0
arahy.Tifrunner.gnm1.ann1.VRH5T3 Arachis hypogaea HOM05D003199 ORTHO05D003528 1.4e-18 97.1 120 68.3
Cc07_g00740 Coffea canephora HOM05D003199 ORTHO05D003528 3.1e-18 95.9 114 65.8
Haze_14863 Corylus avellana HOM05D003199 ORTHO05D003528 4.1e-18 95.5 187 50.8
arahy.Tifrunner.gnm1.ann1.S1U1UA Arachis hypogaea HOM05D003199 ORTHO05D003528 5.4e-18 95.1 120 67.5
Gohir.D09G036100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 5.4e-18 95.1 93 59.1
Gorai.006G041200 Gossypium raimondii HOM05D003199 ORTHO05D003528 5.4e-18 95.1 93 59.1
HanXRQChr14g0450701 Helianthus annuus HOM05D003199 ORTHO05D003528 7.0e-18 94.7 118 67.8
arahy.Tifrunner.gnm1.ann1.NFT2PX Arachis hypogaea HOM05D003199 ORTHO05D003528 9.2e-18 94.4 177 53.1
arahy.Tifrunner.gnm1.ann1.Z1YI97 Arachis hypogaea HOM05D003199 ORTHO05D003528 9.2e-18 94.4 121 47.1
MSTRG.3260 Avicennia marina HOM05D003199 ORTHO05D003528 1.2e-17 94.0 175 52.6
COL.COLO4_17189 Corchorus olitorius HOM05D003199 ORTHO05D003528 1.6e-17 93.6 109 68.8
DCAR_002949 Daucus carota HOM05D003199 ORTHO05D003528 1.6e-17 93.6 113 61.9
Gohir.A09G035300 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.6e-17 93.6 149 55.7
Atru.chr6.2549 Acer truncatum HOM05D003199 ORTHO05D003528 2.7e-17 92.8 116 51.7
Atru.chr6.2557 Acer truncatum HOM05D003199 ORTHO05D003528 2.7e-17 92.8 116 51.7
Migut.F00072 Erythranthe guttata HOM05D003199 ORTHO05D003528 2.7e-17 92.8 117 49.6
Lalb_Chr02g0157721 Lupinus albus HOM05D003199 ORTHO05D003528 3.5e-17 92.4 177 42.4
Thecc.04G034700 Theobroma cacao HOM05D003199 ORTHO05D003528 3.5e-17 92.4 123 49.6
unitig_52.g17653 Utricularia gibba HOM05D003199 ORTHO05D003528 3.5e-17 92.4 112 68.8
CiPaw.04G036100 Carya illinoinensis HOM05D003199 ORTHO05D003528 4.5e-17 92.0 119 52.9
Duzib147G1480 Durio zibethinus HOM05D003199 ORTHO05D003528 4.5e-17 92.0 57 80.7
TWI36G0480 Tripterygium wilfordii HOM05D003199 ORTHO05D003528 4.5e-17 92.0 112 51.8
TAR374G1096 Trochodendron aralioides HOM05D003199 ORTHO05D003528 4.5e-17 92.0 182 49.5
VMungo0464G0590 Vigna mungo HOM05D003199 ORTHO05D003528 7.7e-17 91.3 124 62.1
CARHR148360 Cardamine hirsuta HOM05D003199 ORTHO05D003528 1.0e-16 90.9 121 51.2
Dinv33347 Davidia involucrata HOM05D003199 ORTHO05D003528 1.0e-16 90.9 113 71.7
Oeu011754.1 Olea europaea HOM05D003199 ORTHO05D003528 1.0e-16 90.9 183 38.3
Peaxi162Scf00420g00566 Petunia axillaris HOM05D003199 ORTHO05D003528 1.0e-16 90.9 118 47.5
Hma1.2p1_1278F.1_g272370 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 1.7e-16 90.1 57 77.2
RcHm_v2.0_Chr2g0088911 Rosa chinensis HOM05D003199 ORTHO05D003528 1.7e-16 90.1 115 54.8
RcHm_v2.0_Chr2g0088961 Rosa chinensis HOM05D003199 ORTHO05D003528 1.7e-16 90.1 115 54.8
CiPaw.03G054500 Carya illinoinensis HOM05D003199 ORTHO05D003528 2.3e-16 89.7 106 51.9
Aa31LG2G5470 Aethionema arabicum HOM05D003199 ORTHO05D003528 2.9e-16 89.4 181 45.3
Thhalv10004988m.g Eutrema salsugineum HOM05D003199 ORTHO05D003528 2.9e-16 89.4 118 50.8
Sopen02g017200 Solanum pennellii HOM05D003199 ORTHO05D003528 2.9e-16 89.4 124 46.8
Carub.0005s0539 Capsella rubella HOM05D003199 ORTHO05D003528 3.8e-16 89.0 119 50.4
Lsat_1_v5_gn_2_94161 Lactuca sativa HOM05D003199 ORTHO05D003528 3.8e-16 89.0 115 67.0
Oeu011964.1 Olea europaea HOM05D003199 ORTHO05D003528 3.8e-16 89.0 57 77.2
Solyc02g068090.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 3.8e-16 89.0 124 46.8
THA.LOC104823979 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 3.8e-16 89.0 114 52.6
AL5G16270 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 5.0e-16 88.6 122 50.8
AT3G27160 Arabidopsis thaliana HOM05D003199 ORTHO05D003528 5.0e-16 88.6 122 50.8
RcHm_v2.0_Chr2g0089001 Rosa chinensis HOM05D003199 ORTHO05D003528 6.6e-16 88.2 115 53.9
PGSC0003DMG400006976 Solanum tuberosum HOM05D003199 ORTHO05D003528 8.6e-16 87.8 124 46.0
BcaB07g30185 Brassica carinata HOM05D003199 ORTHO05D003528 1.1e-15 87.4 117 49.6
BcaC04g23918 Brassica carinata HOM05D003199 ORTHO05D003528 1.5e-15 87.0 128 49.2
C09p03490 Brassica napus HOM05D003199 ORTHO05D003528 1.5e-15 87.0 128 49.2
BolC9t53270H Brassica oleracea HOM05D003199 ORTHO05D003528 1.5e-15 87.0 128 49.2
Sp2g16270 Schrenkiella parvula HOM05D003199 ORTHO05D003528 1.5e-15 87.0 118 50.0
Dinv38468 Davidia involucrata HOM05D003199 ORTHO05D003528 1.9e-15 86.7 57 71.9
Oeu011963.1 Olea europaea HOM05D003199 ORTHO05D003528 1.9e-15 86.7 113 69.9
SalBow4G2736 Salvia bowleyana HOM05D003199 ORTHO05D003528 1.9e-15 86.7 176 50.0
A09p03290 Brassica napus HOM05D003199 ORTHO05D003528 2.5e-15 86.3 117 52.1
Actinidia36194 Actinidia chinensis HOM05D003199 ORTHO05D003528 3.3e-15 85.9 107 47.7
BcaB04g19427 Brassica carinata HOM05D003199 ORTHO05D003528 3.3e-15 85.9 117 52.1
BcaC03g17429 Brassica carinata HOM05D003199 ORTHO05D003528 3.3e-15 85.9 117 50.4
BolC2t11446H Brassica oleracea HOM05D003199 ORTHO05D003528 3.3e-15 85.9 117 50.4
BraA09t35967Z Brassica rapa HOM05D003199 ORTHO05D003528 4.3e-15 85.5 117 52.1
BraA02t08519Z Brassica rapa HOM05D003199 ORTHO05D003528 5.6e-15 85.1 58 77.6
Ca_14371_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 9.5e-15 84.3 177 36.7
TAR622G0507 Trochodendron aralioides HOM05D003199 ORTHO05D003528 9.5e-15 84.3 57 71.9
A02p35140 Brassica napus HOM05D003199 ORTHO05D003528 2.8e-14 82.8 118 49.2
DCAR_026209 Daucus carota HOM05D003199 ORTHO05D003528 3.6e-14 82.4 114 46.5
Hma1.2p1_0046F.1_g027530 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 3.6e-14 82.4 129 42.6
PGR083G2021 Punica granatum HOM05D003199 ORTHO05D003528 3.6e-14 82.4 168 51.8
C02p53770 Brassica napus HOM05D003199 ORTHO05D003528 4.7e-14 82.0 117 48.7
PSO063G5134 Papaver somniferum HOM05D003199 ORTHO05D003528 4.7e-14 82.0 117 65.0
Actinidia05917 Actinidia chinensis HOM05D003199 ORTHO05D003528 6.1e-14 81.6 109 47.7
PSO782G3015 Papaver somniferum HOM05D003199 ORTHO05D003528 1.0e-13 80.9 193 49.2
Aqoxy5G03579 Aquilegia oxysepala HOM05D003199 ORTHO05D003528 5.2e-13 78.6 190 36.8
Nn4g22460 Nelumbo nucifera HOM05D003199 ORTHO05D003528 5.2e-13 78.6 128 45.3
QL10p005054 Quercus lobata HOM05D003199 ORTHO05D003528 8.9e-13 77.8 173 34.7
CiPaw.12G035800 Carya illinoinensis HOM05D003199 ORTHO05D003528 1.2e-12 77.4 164 47.6
Eucgr.J02332 Eucalyptus grandis HOM05D003199 ORTHO05D003528 1.2e-12 77.4 114 60.5
MSTRG.4586 Avicennia marina HOM05D003199 ORTHO05D003528 1.5e-12 77.0 109 46.8
Gohir.A07G053400 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.5e-12 77.0 57 70.2
Peaxi162Scf00881g00240 Petunia axillaris HOM05D003199 ORTHO05D003528 1.5e-12 77.0 111 46.8
Eucgr.B00147 Eucalyptus grandis HOM05D003199 ORTHO05D003528 4.4e-12 75.5 53 67.9
Gorai.001G061300 Gossypium raimondii HOM05D003199 ORTHO05D003528 4.4e-12 75.5 57 68.4
Prupe.5G156900 Prunus persica HOM05D003199 ORTHO05D003528 5.7e-12 75.1 181 33.7
Thecc.03G122900 Theobroma cacao HOM05D003199 ORTHO05D003528 5.7e-12 75.1 121 43.0
Gohir.D07G057800 Gossypium hirsutum HOM05D003199 ORTHO05D003528 7.5e-12 74.7 98 50.0
CDE12G0833 Ceratophyllum demersum HOM05D003199 ORTHO05D003528 9.8e-12 74.3 105 67.6
Duzib205G0007 Durio zibethinus HOM05D003199 ORTHO05D003528 1.3e-11 73.9 183 42.6
Eucgr.L01336 Eucalyptus grandis HOM05D003199 ORTHO05D003528 1.7e-11 73.6 98 45.9
Nitab4.5_0005418g0050 Nicotiana tabacum HOM05D003199 ORTHO05D003528 1.7e-11 73.6 54 66.7
Nitab4.5_0010637g0020 Nicotiana tabacum HOM05D003199 ORTHO05D003528 1.7e-11 73.6 54 66.7
Nn1g07337 Nelumbo nucifera HOM05D003199 ORTHO05D003528 2.2e-11 73.2 99 46.5
Lju41C52T19 Lonicera japonica HOM05D003199 ORTHO05D003528 3.7e-11 72.4 57 59.6
TAR626G1428 Trochodendron aralioides HOM05D003199 ORTHO05D003528 3.7e-11 72.4 53 71.7
ECA246G3163 Erigeron canadensis HOM05D003199 ORTHO05D003528 8.3e-11 71.2 112 44.6
PGSC0003DMG400015257 Solanum tuberosum HOM05D003199 ORTHO05D003528 1.1e-10 70.9 53 66.0
EL10Ac7g18075 Beta vulgaris HOM05D003199 ORTHO05D003528 1.4e-10 70.5 106 46.2
Solyc03g110930.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 1.4e-10 70.5 49 71.4
Sopen03g030120 Solanum pennellii HOM05D003199 ORTHO05D003528 4.1e-10 68.9 53 66.0
unitig_52.g17266 Utricularia gibba HOM05D000147 ORTHO05D001254 5.4e-10 68.6 56 60.7
MSTRG.15567 Avicennia marina HOM05D005860 ORTHO05D006977 9.2e-10 67.8 103 41.7
AUR62001279 Chenopodium quinoa HOM05D003199 ORTHO05D003528 9.2e-10 67.8 119 40.3
AUR62025727 Chenopodium quinoa HOM05D003199 ORTHO05D003528 1.2e-09 67.4 119 40.3
C02p62560 Brassica napus HOM05D003199 ORTHO05D003528 1.6e-09 67.0 170 42.9
Medtr7g029325 Medicago truncatula HOM05D003199 ORTHO05D003528 1.6e-09 67.0 188 37.2
BcaC03g18193 Brassica carinata HOM05D003199 ORTHO05D003528 2.0e-09 66.6 170 41.2
BolC2t12315H Brassica oleracea HOM05D003199 ORTHO05D003528 2.0e-09 66.6 170 41.2
Glyma.05G044800 Glycine max HOM05D003199 ORTHO05D003528 2.0e-09 66.6 55 52.7
VMungo1215G0313 Vigna mungo HOM05D003199 ORTHO05D003528 2.7e-09 66.2 55 50.9
Migut.D01231 Erythranthe guttata HOM05D003199 ORTHO05D003528 4.6e-09 65.5 49 59.2
FAN04G2235 Fragaria x ananassa HOM05D003199 ORTHO05D003528 5.9e-09 65.1 55 63.6
Atru.chr9.1013 Acer truncatum HOM05D003199 ORTHO05D003528 7.8e-09 64.7 112 48.2
ECA238G3857 Erigeron canadensis HOM05D003199 ORTHO05D003528 7.8e-09 64.7 92 67.4
Lj4g0002784 Lotus japonicus HOM05D003199 ORTHO05D003528 7.8e-09 64.7 113 38.9
Lsat_1_v5_gn_5_13260 Lactuca sativa HOM05D003199 ORTHO05D003528 1.0e-08 64.3 110 42.7
Peaxi162Scf00089g00228 Petunia axillaris HOM05D003199 ORTHO05D003528 1.0e-08 64.3 54 57.4
Ciclev10022507m.g Citrus clementina HOM05D003199 ORTHO05D003528 1.3e-08 63.9 171 42.1
Aa31LG1G18700 Aethionema arabicum HOM05D003199 ORTHO05D003528 2.3e-08 63.2 114 49.1
FvH4_5g07520 Fragaria vesca HOM05D003199 ORTHO05D003528 2.3e-08 63.2 50 66.0
HanXRQChr05g0154721 Helianthus annuus HOM05D003199 ORTHO05D003528 3.0e-08 62.8 111 34.2
Thhalv10005605m.g Eutrema salsugineum HOM05D003199 ORTHO05D003528 3.9e-08 62.4 113 47.8
Sp2g26420 Schrenkiella parvula HOM05D003199 ORTHO05D003528 5.0e-08 62.0 113 49.6
MBI11_g19368_MAGBIO Magnolia biondii HOM05D003199 ORTHO05D003528 6.6e-08 61.6 114 40.4
RcHm_v2.0_Chr7g0191151 Rosa chinensis HOM05D003199 ORTHO05D003528 6.6e-08 61.6 54 63.0
FAN08G2398 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.1e-07 60.8 58 58.6
Carub.0008s2405 Capsella rubella HOM05D003199 ORTHO05D003528 1.5e-07 60.5 109 37.6
SalBow1G6303 Salvia bowleyana HOM05D003199 ORTHO05D003528 1.5e-07 60.5 53 58.5
AL8G40380 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 1.9e-07 60.1 53 58.5
AT5G63300 Arabidopsis thaliana HOM05D003199 ORTHO05D003528 1.9e-07 60.1 56 53.6
SGA_v2.0_scaffold44G16909 Striga asiatica HOM05D003199 ORTHO05D003528 2.5e-07 59.7 57 50.9
Sc04g0000960 Simmondsia chinensis HOM05D003199 ORTHO05D003528 3.3e-07 59.3 35 85.7
TPR.G38327 Trifolium pratense HOM05D003199 ORTHO05D003528 4.3e-07 58.9 119 46.2
Duzib187G1506 Durio zibethinus HOM05D003199 ORTHO05D003528 9.5e-07 57.8 38 76.3
CARHR277140 Cardamine hirsuta HOM05D003199 ORTHO05D003528 1.2e-06 57.4 106 38.7
Potri.012G092700 Populus trichocarpa HOM05D003199 ORTHO05D003528 1.2e-06 57.4 53 50.9
AagrBONN_evm.TU.Sc2ySwM_228.1446 Anthoceros agrestis HOM05D003199 ORTHO05D003528 4.7e-06 55.5 55 45.5
vmacro23156 Vaccinium macrocarpon HOM05D003199 ORTHO05D003528 6.2e-06 55.1 105 40.0
EL10Ac9g20876 Beta vulgaris HOM05D003199 ORTHO05D003528 8.0e-06 54.7 35 77.1
Ca_05564_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 8.0e-06 54.7 120 31.7


User provided reference genes

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