Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 0.0e+00 1440.6 720 100.0
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 0.0e+00 1204.5 715 82.8
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 0.0e+00 1203.0 715 81.7
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 0.0e+00 1197.2 715 81.8
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 0.0e+00 1192.9 715 82.5
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 0.0e+00 1181.0 716 81.3
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 0.0e+00 1160.6 727 79.0
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 0.0e+00 1155.2 717 78.8
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 0.0e+00 1135.2 720 77.8
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 0.0e+00 1133.2 720 77.8
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 0.0e+00 1105.9 716 77.0
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 4.1e-309 1064.3 644 80.4
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 1.7e-286 989.2 724 66.2
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 3.2e-285 984.9 723 67.2
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 1.0e-283 979.9 725 66.5
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 4.3e-282 974.5 723 65.7
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.6e-282 974.2 719 65.4
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 1.2e-281 973.0 720 66.5
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 2.8e-281 971.8 733 65.2
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 6.2e-281 970.7 733 64.7
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.4e-280 969.5 720 66.1
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 4.0e-280 968.0 720 66.0
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 5.2e-280 967.6 720 66.2
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 2.0e-279 965.7 728 65.9
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 7.6e-279 963.8 708 67.1
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 3.8e-278 961.4 726 64.7
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 1.4e-277 959.5 730 64.4
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 2.4e-277 958.7 733 64.1
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 1.0e-275 953.4 734 63.8
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 1.7e-275 952.6 716 64.4
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 3.0e-275 951.8 720 65.1
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 6.6e-275 950.7 727 64.5
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 8.7e-275 950.3 723 65.4
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 3.3e-274 948.3 720 65.4
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 3.6e-273 944.9 724 64.6
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 1.1e-272 943.3 723 64.3
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 2.4e-272 942.2 728 62.8
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 6.9e-272 940.6 723 63.8
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 7.6e-271 937.2 721 64.4
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 7.6e-271 937.2 759 61.5
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 3.5e-268 928.3 742 62.5
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 3.9e-267 924.9 719 63.4
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 3.9e-267 924.9 727 62.9
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 5.1e-267 924.5 763 60.9
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 6.7e-267 924.1 719 63.8
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 1.1e-266 923.3 720 63.3
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 4.3e-266 921.4 715 63.6
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 1.3e-265 919.8 726 62.1
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 1.1e-264 916.8 719 62.9
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 9.0e-264 913.7 726 61.8
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 5.8e-263 911.0 723 62.7
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 9.9e-263 910.2 720 62.6
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 1.7e-262 909.4 728 62.2
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 1.9e-261 906.0 729 62.0
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 2.4e-261 905.6 730 61.4
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 3.2e-261 905.2 789 59.3
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 3.5e-260 901.7 721 60.9
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 1.0e-259 900.2 729 61.7
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 7.4e-258 894.0 723 61.5
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 4.8e-257 891.3 723 61.5
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 6.2e-257 891.0 723 60.7
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.4e-256 889.8 720 61.9
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 2.4e-256 889.0 722 60.8
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.9e-254 882.1 726 60.3
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 5.5e-253 877.9 703 61.9
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.1e-250 870.2 726 59.6
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 2.5e-250 869.0 703 60.9
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 3.3e-250 868.6 727 59.7
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 1.6e-249 866.3 671 64.2
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 1.2e-247 860.1 728 60.3
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 2.3e-243 845.9 702 59.4
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 3.4e-231 805.4 719 56.7
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 5.9e-231 804.7 726 57.7
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 2.1e-228 796.2 720 54.7
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 4.4e-226 788.5 607 62.9
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 7.0e-224 781.2 668 59.0
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 2.0e-223 779.6 723 56.8
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 1.7e-222 776.5 605 62.6
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.1e-221 773.9 753 54.1
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 2.3e-219 766.1 607 61.1
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 1.8e-216 756.5 720 53.6
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 1.8e-216 756.5 732 55.2
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 4.1e-216 755.4 615 62.6
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 2.7e-215 752.7 732 51.9
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 7.5e-210 734.6 822 50.7
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 2.8e-209 732.6 757 52.0
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 7.7e-207 724.5 634 57.3
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 3.0e-203 712.6 494 68.0
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 1.7e-201 706.8 635 56.9
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 1.2e-194 684.1 617 58.7
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 7.3e-189 664.8 611 54.2
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 9.5e-189 664.5 724 51.4
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 2.1e-188 663.3 492 64.8
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.9e-181 640.2 728 48.8
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.7e-174 617.1 454 65.0
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 3.1e-171 606.3 463 62.4
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 4.0e-171 605.9 526 59.9
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 1.4e-160 570.9 741 43.2
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 2.8e-156 556.6 727 42.8
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 2.9e-153 546.6 610 48.2
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 3.8e-153 546.2 412 66.3
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 3.8e-129 466.5 581 42.7
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 8.2e-124 448.7 416 53.8
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 5.5e-120 436.0 627 43.1
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 7.2e-112 409.1 826 34.0
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 2.3e-110 404.1 379 54.4
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 6.3e-108 396.0 347 57.6
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 5.3e-107 392.9 541 40.1
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.8e-102 377.9 481 42.4
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.1e-99 368.6 289 61.6
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 9.8e-93 345.5 469 41.2
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.9e-82 309.7 225 64.0
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 4.3e-80 303.5 226 67.3
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 1.5e-61 241.9 666 31.1
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 2.5e-56 224.6 258 45.7
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 9.5e-56 222.6 188 59.0
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 6.2e-55 219.9 321 41.1
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 4.0e-54 217.2 125 71.2
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 3.8e-52 210.7 321 35.8
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.5e-48 198.7 144 63.9
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 6.4e-44 183.3 190 56.8
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.6e-42 178.7 126 66.7
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.5e-37 162.2 126 63.5
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.3e-31 142.5 114 55.3
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 1.1e-30 139.4 106 62.3
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.1e-30 139.4 100 65.0
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.3e-24 117.5 169 43.8
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 4.3e-24 117.5 105 60.0
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 1.1e-22 112.8 131 45.8
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 1.1e-22 112.8 82 75.6
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 1.3e-20 105.9 66 69.7
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 3.0e-17 94.7 78 61.5
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 5.7e-16 90.5 86 58.1
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 2.8e-15 88.2 289 27.0
arahy.Tifrunner.gnm1.ann1.1SX7LU Arachis hypogaea HOM05D005479 ORTHO05D019704 1.2e-13 82.8 83 56.6
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 1.5e-13 82.4 61 57.4
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 2.5e-08 65.1 44 65.9
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 4.3e-08 64.3 50 66.0
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 4.3e-08 64.3 60 48.3
VMungo0331G0048 Vigna mungo HOM05D000010 ORTHO05D435787 4.8e-07 60.8 47 61.7
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 3.1e-06 58.2 44 56.8
A09p04910 Brassica napus HOM05D005479 ORTHO05D040437 5.3e-06 57.4 35 74.3
BraA09t36129Z Brassica rapa HOM05D005479 ORTHO05D040437 5.3e-06 57.4 35 74.3
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 9.1e-06 56.6 39 61.5
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 9.1e-06 56.6 59 44.1


User provided reference genes

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