Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0001827 Lotus japonicus HOM05D004340 ORTHO05D006363 0.0e+00 1692.9 858 100.0
Lj4g0013877 Lotus japonicus HOM05D004340 ORTHO05D006363 0.0e+00 1520.8 879 89.8
TPR.G34046 Trifolium pratense HOM05D004340 ORTHO05D006363 0.0e+00 1406.7 892 81.8
Phvul.001G233800 Phaseolus vulgaris HOM05D004340 ORTHO05D006363 0.0e+00 1381.3 892 80.8
Medtr4g082150 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1377.1 892 80.7
Ca_18821_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 0.0e+00 1374.4 886 81.4
Medtr4g082265 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1370.1 892 80.6
VMungo1383G3199 Vigna mungo HOM05D004340 ORTHO05D006363 0.0e+00 1368.6 891 79.8
Glyma.11G220500 Glycine max HOM05D004340 ORTHO05D006363 0.0e+00 1368.2 892 80.3
Glyma.18G036900 Glycine max HOM05D004340 ORTHO05D006363 0.0e+00 1356.7 892 79.3
arahy.Tifrunner.gnm1.ann1.AR8P07 Arachis hypogaea HOM05D004340 ORTHO05D006363 0.0e+00 1312.4 894 78.1
arahy.Tifrunner.gnm1.ann1.MXBT1J Arachis hypogaea HOM05D004340 ORTHO05D006363 0.0e+00 1300.0 894 77.6
Medtr7g021880 Medicago truncatula HOM05D004340 ORTHO05D006363 0.0e+00 1297.3 882 77.9
QL03p068099 Quercus lobata HOM05D004340 ORTHO05D006363 0.0e+00 1192.9 899 71.0
Thecc.02G342300 Theobroma cacao HOM05D004340 ORTHO05D006363 0.0e+00 1188.3 883 70.9
Dinv16674 Davidia involucrata HOM05D004340 ORTHO05D006363 0.0e+00 1182.2 888 70.3
Gorai.013G087900 Gossypium raimondii HOM05D004340 ORTHO05D006363 0.0e+00 1172.1 882 70.0
Gohir.A13G077700 Gossypium hirsutum HOM05D004340 ORTHO05D006363 0.0e+00 1167.1 884 70.1
GSVIVG01019948001 Vitis vinifera HOM05D004340 ORTHO05D006363 0.0e+00 1165.6 889 69.0
Gohir.D13G076900 Gossypium hirsutum HOM05D004340 ORTHO05D006363 0.0e+00 1164.1 882 69.6
TAR629G2604 Trochodendron aralioides HOM05D004340 ORTHO05D006363 0.0e+00 1155.6 889 68.3
Cfa008953 Carpinus fangiana HOM05D004340 ORTHO05D006363 0.0e+00 1154.0 889 69.2
Atru.chr11.1746 Acer truncatum HOM05D004340 ORTHO05D006363 0.0e+00 1149.0 892 68.3
Prupe.1G035400 Prunus persica HOM05D004340 ORTHO05D006363 0.0e+00 1148.7 894 69.1
Haze_11982 Corylus avellana HOM05D004340 ORTHO05D006363 0.0e+00 1147.1 916 67.2
CANSAT64G1884 Cannabis sativa HOM05D004340 ORTHO05D006363 0.0e+00 1143.6 894 67.7
Lalb_Chr05g0220271 Lupinus albus HOM05D004340 ORTHO05D006363 0.0e+00 1143.3 753 79.5
MD16G1069200 Malus domestica HOM05D004340 ORTHO05D006363 0.0e+00 1142.9 889 68.7
RcHm_v2.0_Chr4g0439421 Rosa chinensis HOM05D004340 ORTHO05D006363 0.0e+00 1134.8 891 67.9
Atru.chr10.1247 Acer truncatum HOM05D004340 ORTHO05D006363 0.0e+00 1132.9 892 67.5
vmacro05308 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 0.0e+00 1124.8 891 67.2
TWI79G0307 Tripterygium wilfordii HOM05D004340 ORTHO05D006363 0.0e+00 1123.6 890 67.8
CSS0018825 Camellia sinensis var. sinensis HOM05D004340 ORTHO05D006363 0.0e+00 1121.7 890 66.2
PGR102G3073 Punica granatum HOM05D004340 ORTHO05D006363 0.0e+00 1114.8 889 66.6
Rhsim10G0119600 Rhododendron simsii HOM05D004340 ORTHO05D006363 0.0e+00 1114.8 904 66.2
Manes.01G034000 Manihot esculenta HOM05D004340 ORTHO05D006363 0.0e+00 1114.4 890 66.4
Ciclev10030675m.g Citrus clementina HOM05D004340 ORTHO05D006363 0.0e+00 1113.6 893 66.3
Psat7g160080 Pisum sativum HOM05D004340 ORTHO05D006363 0.0e+00 1112.1 687 84.1
Eucgr.I00217 Eucalyptus grandis HOM05D004340 ORTHO05D006363 0.0e+00 1111.3 873 67.0
Potri.008G089600 Populus trichocarpa HOM05D004340 ORTHO05D006363 0.0e+00 1107.0 894 66.9
FAN04G3196 Fragaria x ananassa HOM05D004340 ORTHO05D006363 0.0e+00 1106.7 885 67.6
Sc11g0002100 Simmondsia chinensis HOM05D004340 ORTHO05D006363 0.0e+00 1103.2 881 66.3
TPR.G5981 Trifolium pratense HOM05D004340 ORTHO05D006363 0.0e+00 1094.3 893 67.3
Nn4g23232 Nelumbo nucifera HOM05D004340 ORTHO05D006363 0.0e+00 1092.8 882 65.8
Aqoxy3G03456 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 0.0e+00 1088.9 885 64.6
FAN13G0065 Fragaria x ananassa HOM05D004340 ORTHO05D006363 0.0e+00 1082.8 880 66.4
FAN18G2257 Fragaria x ananassa HOM05D004340 ORTHO05D006363 0.0e+00 1082.4 880 66.5
Thhalv10027638m.g Eutrema salsugineum HOM05D004340 ORTHO05D006363 0.0e+00 1081.6 884 65.6
AT2G04660 Arabidopsis thaliana HOM05D004340 ORTHO05D006363 0.0e+00 1079.7 884 65.0
Sabra08G0067000 Salix brachista HOM05D004340 ORTHO05D006363 0.0e+00 1079.7 893 65.4
AUR62032818 Chenopodium quinoa HOM05D004340 ORTHO05D006363 0.0e+00 1079.3 884 64.9
THA.LOC104801804 Tarenaya hassleriana HOM05D004340 ORTHO05D006363 0.0e+00 1078.2 891 64.8
CAN.G1335.16 Capsicum annuum HOM05D004340 ORTHO05D006363 0.0e+00 1075.8 889 64.6
AUR62005824 Chenopodium quinoa HOM05D004340 ORTHO05D006363 0.0e+00 1075.5 886 64.7
AL3G42300 Arabidopsis lyrata HOM05D004340 ORTHO05D006363 5.9e-312 1074.3 884 64.8
CsaV3_5G025240 Cucumis sativus L. HOM05D004340 ORTHO05D006363 5.9e-312 1073.9 892 64.9
MELO3C002960.2 Cucumis melo HOM05D004340 ORTHO05D006363 1.2e-311 1072.8 892 64.5
EL10Ac6g13244 Beta vulgaris HOM05D004340 ORTHO05D006363 4.1e-311 1071.2 885 64.2
Carub.0003s2628 Capsella rubella HOM05D004340 ORTHO05D006363 2.0e-310 1068.9 884 64.6
PSO063G1986 Papaver somniferum HOM05D004340 ORTHO05D006363 3.4e-310 1068.1 888 64.0
Sopen05g003610 Solanum pennellii HOM05D004340 ORTHO05D006363 2.9e-309 1065.1 889 64.0
Sp7g01960 Schrenkiella parvula HOM05D004340 ORTHO05D006363 4.9e-309 1064.3 885 65.2
Solyc05g007750.4 Solanum lycopersicum HOM05D004340 ORTHO05D006363 2.4e-308 1062.0 889 63.9
PGSC0003DMG400018437 Solanum tuberosum HOM05D004340 ORTHO05D006363 9.3e-308 1060.1 889 64.0
Nitab4.5_0000040g0090 Nicotiana tabacum HOM05D004340 ORTHO05D006363 4.6e-307 1057.7 918 62.9
PSO832G0091 Papaver somniferum HOM05D004340 ORTHO05D006363 6.0e-307 1057.4 921 61.9
Peaxi162Scf00222g00716 Petunia axillaris HOM05D004340 ORTHO05D006363 1.7e-306 1055.8 876 64.3
MSTRG.717 Avicennia marina HOM05D004340 ORTHO05D006363 6.6e-306 1053.9 893 64.4
Cc11_g12720 Coffea canephora HOM05D004340 ORTHO05D006363 1.1e-305 1053.1 893 63.6
Lj3A1035G45 Lonicera japonica HOM05D004340 ORTHO05D006363 4.3e-305 1051.2 914 62.9
CARHR261990 Cardamine hirsuta HOM05D004340 ORTHO05D006363 2.1e-304 1048.9 884 63.6
Nitab4.5_0004300g0030 Nicotiana tabacum HOM05D004340 ORTHO05D006363 4.4e-302 1041.2 915 61.9
ClCG09G021920 Citrullus lanatus HOM05D004340 ORTHO05D006363 5.8e-302 1040.8 892 63.0
Migut.L01267 Erythranthe guttata HOM05D004340 ORTHO05D006363 1.3e-301 1039.6 887 64.1
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 2.2e-301 1038.9 878 64.1
BcaC03g13079 Brassica carinata HOM05D004340 ORTHO05D006363 6.4e-301 1037.3 882 63.2
COL.COLO4_27998 Corchorus olitorius HOM05D004340 ORTHO05D006363 6.4e-301 1037.3 877 63.7
Aa31LG10G13720 Aethionema arabicum HOM05D004340 ORTHO05D006363 5.4e-300 1034.2 937 60.2
Ca_29729_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 4.6e-299 1031.2 667 81.3
Ah.03g134830 Amaranthus hybridus HOM05D004340 ORTHO05D006363 2.3e-298 1028.9 940 60.1
DCAR_027428 Daucus carota HOM05D004340 ORTHO05D006363 2.3e-298 1028.9 892 62.9
SalBow2G1648 Salvia bowleyana HOM05D004340 ORTHO05D006363 5.1e-298 1027.7 917 61.1
Lsat_1_v5_gn_8_50141 Lactuca sativa HOM05D004340 ORTHO05D006363 1.5e-297 1026.2 884 62.2
BolC2t06011H Brassica oleracea HOM05D004340 ORTHO05D006363 5.6e-297 1024.2 882 62.6
BraA02t04684Z Brassica rapa HOM05D004340 ORTHO05D006363 2.1e-296 1022.3 883 63.1
BcaB05g21922 Brassica carinata HOM05D004340 ORTHO05D006363 5.3e-295 1017.7 889 63.0
Hund25218 Selenicereus undatus HOM05D004340 ORTHO05D006363 7.6e-294 1013.8 840 64.5
Cpa.g.sc1.50 Carica papaya HOM05D004340 ORTHO05D006363 1.6e-291 1006.1 780 68.1
FvH4_5g29350 Fragaria vesca HOM05D004340 ORTHO05D006363 1.8e-290 1002.7 817 66.1
HanXRQChr12g0362121 Helianthus annuus HOM05D004340 ORTHO05D006363 1.8e-287 992.6 888 60.6
Sed0000698 Sechium edule HOM05D004340 ORTHO05D006363 1.8e-287 992.6 892 61.5
CiPaw.05G131900 Carya illinoinensis HOM05D004340 ORTHO05D006363 5.8e-286 987.6 713 73.5
ECA233G3760 Erigeron canadensis HOM05D004340 ORTHO05D006363 9.6e-281 970.3 780 66.5
Os04g0484800 Oryza sativa ssp. japonica HOM05D004340 ORTHO05D006363 1.2e-278 963.4 871 59.9
Zm00001eb227040 Zea mays HOM05D004340 ORTHO05D006363 1.5e-278 963.0 864 59.7
BraA04t16952Z Brassica rapa HOM05D004340 ORTHO05D006363 1.7e-277 959.5 881 60.6
BolC4t26245H Brassica oleracea HOM05D004340 ORTHO05D006363 7.2e-276 954.1 890 60.2
C04p46590 Brassica napus HOM05D004340 ORTHO05D006363 2.1e-275 952.6 888 60.5
ATR0564G449 Amborella trichopoda HOM05D004340 ORTHO05D006363 1.1e-273 946.8 887 57.4
MBI05_g36413_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D006363 1.2e-270 936.8 704 69.0
BcaB06g27417 Brassica carinata HOM05D004340 ORTHO05D006363 2.0e-270 936.0 888 58.9
Aqoxy3G02559 Aquilegia oxysepala HOM05D004340 ORTHO05D006363 1.7e-269 932.9 893 56.2
A04p12890 Brassica napus HOM05D004340 ORTHO05D006363 2.2e-269 932.6 927 56.7
vmacro11375 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.1e-265 920.2 1129 49.4
Duzib251G0421 Durio zibethinus HOM05D004340 ORTHO05D006363 2.1e-259 899.4 622 73.6
HPP92_021921 Vanilla planifolia HOM05D004340 ORTHO05D006363 2.2e-248 862.8 851 56.4
unitig_747.g21183 Utricularia gibba HOM05D004340 ORTHO05D006363 6.8e-218 761.5 879 50.3
TPR.G26175 Trifolium pratense HOM05D004340 ORTHO05D006363 1.3e-197 694.1 446 80.0
Rhsim10G0051900 Rhododendron simsii HOM05D004340 ORTHO05D006363 8.9e-194 681.4 858 46.4
Oeu005760.1 Olea europaea HOM05D004340 ORTHO05D006363 1.2e-190 671.0 875 47.2
Pp3c11_22070 Physcomitrium patens HOM05D004340 ORTHO05D006363 6.0e-182 642.1 945 41.4
Mapoly0122s0055 Marchantia polymorpha HOM05D004340 ORTHO05D006363 2.4e-175 620.2 967 40.7
AagrBONN_evm.TU.Sc2ySwM_344.3807 Anthoceros agrestis HOM05D004340 ORTHO05D006363 1.6e-174 617.5 838 44.0
SMO361G0530 Selaginella moellendorffii HOM05D004340 ORTHO05D006363 7.6e-169 598.6 747 45.9
Actinidia33215 Actinidia chinensis HOM05D004340 ORTHO05D006363 1.4e-167 594.3 797 46.3
SEGI_17726 Sequoiadendron giganteum HOM05D004340 ORTHO05D006363 5.3e-154 549.3 586 52.2
vmacro05171 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 2.6e-145 520.4 513 56.9
HPP92_022008 Vanilla planifolia HOM05D004340 ORTHO05D006363 2.9e-144 516.9 410 64.9
CDE04G0644 Ceratophyllum demersum HOM05D004340 ORTHO05D006363 4.5e-113 413.3 462 53.2
Prupe.1G191200 Prunus persica HOM05D004340 ORTHO05D006363 4.0e-109 400.2 284 72.2
Glyma.10G070000 Glycine max HOM05D004340 ORTHO05D006363 1.0e-104 385.6 267 74.9
PRCOL_00002008 Prasinoderma coloniale HOM05D004340 ORTHO05D006363 9.8e-100 369.0 645 37.1
HPP92_022007 Vanilla planifolia HOM05D004340 ORTHO05D006363 6.0e-97 359.8 406 51.7
MCO02G279 Micromonas commoda HOM05D004340 ORTHO05D006363 3.5e-89 334.0 683 32.9
Oeu050624.1 Olea europaea HOM05D004340 ORTHO05D006363 6.9e-77 293.1 187 78.1
vmacro05169 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 5.6e-71 273.5 308 52.6
Ca_30738_v3 Cicer arietinum L. HOM05D004340 ORTHO05D006363 1.3e-70 272.3 198 73.2
C02p00140 Brassica napus HOM05D004340 ORTHO05D006363 4.0e-61 240.7 176 68.2
TPR.G26189 Trifolium pratense HOM05D004340 ORTHO05D006363 4.0e-61 240.7 186 67.7
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 1.3e-59 235.7 188 61.7
Cre10.g460532 Chlamydomonas reinhardtii HOM05D004340 ORTHO05D006363 1.1e-47 196.1 832 21.9
CBR_g543 Chara braunii HOM05D004340 ORTHO05D006363 7.7e-44 183.3 334 38.6
CBR_g545 Chara braunii HOM05D004340 ORTHO05D006363 2.1e-41 175.3 187 46.0
Eucgr.L00670 Eucalyptus grandis HOM05D004340 ORTHO05D006363 3.0e-40 171.4 181 56.4
Nn1g04521 Nelumbo nucifera HOM05D004340 ORTHO05D006363 3.4e-36 157.9 108 75.9
Eucgr.L00684 Eucalyptus grandis HOM05D004340 ORTHO05D006363 1.4e-32 146.0 191 49.2
Medtr7g022050 Medicago truncatula HOM05D001042 ORTHO05D007836 1.1e-29 136.3 119 61.3
vmacro05170 Vaccinium macrocarpon HOM05D004340 ORTHO05D006363 1.6e-25 122.5 82 73.2
Cpa.g.sc1.51 Carica papaya HOM05D004340 ORTHO05D014919 4.7e-25 120.9 98 61.2
Nn1g04520 Nelumbo nucifera HOM05D004340 ORTHO05D006363 5.2e-24 117.5 72 79.2
Lalb_Chr05g0220261 Lupinus albus HOM05D004340 ORTHO05D014919 1.3e-22 112.8 84 65.5
RcHm_v2.0_Chr1g0372981 Rosa chinensis HOM05D004340 ORTHO05D013606 1.3e-22 112.8 75 65.3
SHI21659 Sapria himalayana HOM05D004340 ORTHO05D006363 4.8e-22 110.9 139 46.0
Medtr0073s0020 Medicago truncatula HOM05D001042 ORTHO05D007836 4.1e-21 107.8 60 81.7
Cfa022061 Carpinus fangiana HOM05D004340 ORTHO05D125423 1.3e-19 102.8 434 23.3
MBI05_g36411_MAGBIO Magnolia biondii HOM05D004340 ORTHO05D014919 7.2e-18 97.1 204 36.8
PSO423G0166 Papaver somniferum HOM05D004340 ORTHO05D006363 2.8e-14 85.1 110 45.5
BolC2t12024H Brassica oleracea HOM05D004340 ORTHO05D040691 1.6e-12 79.3 110 44.5
Nn1g04519 Nelumbo nucifera HOM05D004340 ORTHO05D006363 2.7e-12 78.6 110 44.5
Nn1g04518 Nelumbo nucifera HOM05D004340 ORTHO05D014919 8.5e-11 73.6 69 55.1
EL10Ac2g03889 Beta vulgaris HOM05D004340 ORTHO05D014919 4.2e-10 71.2 90 44.4
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 7.2e-10 70.5 72 54.2
Lj1g0006325 Lotus japonicus HOM05D000319 ORTHO05D000903 2.1e-09 68.9 219 22.4
SHI21660 Sapria himalayana HOM05D004340 ORTHO05D006363 2.7e-09 68.6 100 47.0
FAN24G2810 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.6e-09 68.2 64 57.8
SHI21663 Sapria himalayana HOM05D004340 ORTHO05D014919 6.1e-09 67.4 77 40.3
RcHm_v2.0_Chr1g0327871 Rosa chinensis HOM05D004340 ORTHO05D006363 8.0e-09 67.0 38 81.6
SHI21661 Sapria himalayana HOM05D004340 ORTHO05D006363 1.0e-08 66.6 75 48.0
C02p59600 Brassica napus HOM05D004340 ORTHO05D040691 4.0e-08 64.7 53 58.5
RcHm_v2.0_Chr7g0204451 Rosa chinensis HOM05D000319 ORTHO05D348206 6.8e-08 63.9 202 24.3
BolC8t48379H Brassica oleracea HOM05D004340 ORTHO05D014919 8.8e-08 63.5 116 36.2
MD13G1068900 Malus domestica HOM05D004340 ORTHO05D006363 1.5e-07 62.8 36 83.3
BcaC07g37997 Brassica carinata HOM05D004340 ORTHO05D014919 2.6e-07 62.0 72 43.1
SEGI_26412 Sequoiadendron giganteum HOM05D004340 ORTHO05D014919 1.3e-06 59.7 93 36.6
FAN17G0542 Fragaria x ananassa HOM05D000319 ORTHO05D204892 3.7e-06 58.2 204 22.5


User provided reference genes

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