Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 2.2e-260 901.7 454 100.0
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 9.7e-248 859.8 454 95.2
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 2.0e-229 798.9 445 89.4
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 8.0e-226 786.9 454 86.1
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 1.8e-225 785.8 450 86.9
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 4.1e-222 774.6 443 86.7
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 5.4e-222 774.2 433 88.2
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 2.5e-219 765.4 436 86.0
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 3.3e-219 765.0 454 84.1
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 4.3e-219 764.6 454 84.1
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 2.0e-216 755.7 445 84.5
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 4.4e-216 754.6 445 83.1
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 9.8e-216 753.4 446 84.5
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 4.6e-205 718.0 439 81.5
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 2.0e-200 702.6 432 80.8
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 3.4e-200 701.8 432 81.0
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 1.3e-199 699.9 432 80.6
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.0e-196 690.3 444 76.1
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.2e-194 683.3 448 76.6
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 2.1e-194 682.6 444 75.5
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 1.1e-193 680.2 443 76.7
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 2.4e-193 679.1 448 75.7
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 3.1e-193 678.7 438 77.6
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 3.1e-193 678.7 448 75.4
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.2e-193 677.9 441 76.6
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 5.2e-193 677.9 426 77.7
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 5.2e-193 677.9 442 76.2
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 1.5e-192 676.4 442 76.7
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 2.0e-192 676.0 437 76.7
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 2.6e-192 675.6 451 75.8
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.8e-192 674.5 437 76.7
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 9.9e-192 673.7 432 76.9
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 2.2e-191 672.5 429 76.5
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 3.8e-191 671.8 445 75.1
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 8.4e-191 670.6 448 74.6
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 1.1e-190 670.2 444 74.3
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 1.1e-190 670.2 448 74.3
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 1.4e-190 669.8 441 75.5
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 1.9e-190 669.5 444 75.7
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 2.4e-190 669.1 442 75.1
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 2.4e-190 669.1 426 76.5
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.2e-190 668.7 443 76.5
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 3.2e-190 668.7 443 76.5
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 5.4e-190 667.9 441 77.3
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 9.2e-190 667.2 437 75.5
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 1.6e-189 666.4 451 74.7
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 2.1e-189 666.0 430 77.0
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.7e-189 665.6 443 75.6
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.7e-189 665.6 443 75.6
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 3.5e-189 665.2 441 74.6
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 4.6e-189 664.8 443 75.8
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 1.7e-188 662.9 448 73.4
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 2.3e-188 662.5 436 76.4
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 3.9e-188 661.8 448 73.4
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 3.9e-188 661.8 431 76.6
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 3.9e-188 661.8 445 75.7
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 6.6e-188 661.0 444 73.4
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 6.6e-188 661.0 431 75.6
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 6.6e-188 661.0 445 75.3
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 6.6e-188 661.0 445 75.3
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 6.6e-188 661.0 442 74.0
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 8.7e-188 660.6 437 73.7
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 1.1e-187 660.2 432 76.2
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 1.5e-187 659.8 442 75.3
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.5e-187 659.8 445 75.3
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.9e-187 659.4 457 71.6
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 2.5e-187 659.1 436 74.3
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 9.6e-187 657.1 436 73.9
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 9.6e-187 657.1 447 72.7
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 1.2e-186 656.8 431 75.4
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 1.6e-186 656.4 451 73.4
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 3.6e-186 655.2 446 72.9
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 4.7e-186 654.8 430 75.8
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 4.7e-186 654.8 448 72.1
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 6.2e-186 654.4 443 75.2
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 1.1e-185 653.7 465 71.6
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 2.4e-185 652.5 431 75.2
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 9.0e-185 650.6 425 75.1
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 1.2e-184 650.2 417 76.7
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 1.5e-184 649.8 435 73.6
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 2.0e-184 649.4 416 76.9
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 4.4e-184 648.3 432 75.2
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 5.8e-184 647.9 434 75.8
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 7.6e-184 647.5 442 71.0
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 9.9e-184 647.1 438 73.5
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 6.4e-183 644.4 435 74.5
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 6.4e-183 644.4 431 73.5
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.4e-182 642.5 452 71.2
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 3.2e-182 642.1 452 71.9
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 3.2e-182 642.1 441 73.2
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 3.2e-182 642.1 434 75.3
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 5.4e-182 641.3 448 72.1
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 1.6e-181 639.8 446 70.6
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 2.1e-181 639.4 437 71.9
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 2.1e-181 639.4 452 71.2
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 3.5e-181 638.6 430 74.4
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 6.0e-181 637.9 445 70.3
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 1.7e-180 636.3 452 71.2
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 2.3e-180 636.0 445 71.9
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 2.3e-180 636.0 430 74.2
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 6.6e-180 634.4 441 72.1
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 8.7e-180 634.0 435 72.2
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 1.9e-179 632.9 432 72.2
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 1.9e-179 632.9 446 69.5
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 1.3e-178 630.2 433 72.1
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 1.3e-178 630.2 433 71.8
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.0e-177 625.2 429 70.6
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 5.3e-177 624.8 426 71.8
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 7.6e-176 620.9 440 70.0
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 4.9e-175 618.2 436 71.1
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 3.5e-173 612.1 427 69.8
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 4.6e-173 611.7 427 69.8
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 6.7e-172 607.8 442 68.6
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 8.7e-172 607.4 416 73.1
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 1.5e-171 606.7 428 69.2
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 2.5e-171 605.9 428 69.6
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 7.4e-171 604.4 427 69.8
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.1e-170 602.8 427 68.9
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 2.1e-170 602.8 427 68.9
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 2.8e-170 602.4 425 69.9
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 2.8e-170 602.4 429 69.5
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 4.8e-170 601.7 428 69.4
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 4.8e-170 601.7 382 75.4
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 1.4e-169 600.1 433 68.1
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 2.4e-169 599.4 425 69.6
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 2.4e-169 599.4 426 68.8
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 3.4e-168 595.5 446 67.0
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 4.5e-168 595.1 402 73.9
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 2.9e-167 592.4 402 73.1
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 1.4e-166 590.1 409 69.9
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 9.3e-166 587.4 437 66.6
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 9.3e-166 587.4 443 66.1
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 5.1e-164 581.6 450 64.0
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.9e-163 579.7 440 66.1
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 5.6e-163 578.2 385 73.8
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 9.6e-163 577.4 370 75.9
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 8.2e-162 574.3 371 75.7
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 1.7e-159 566.6 365 75.1
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 2.9e-159 565.8 371 74.7
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 6.5e-159 564.7 438 66.0
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.1e-158 563.9 429 67.4
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 1.3e-154 550.4 379 72.8
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 2.0e-152 543.1 372 72.0
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 1.7e-143 513.5 448 61.4
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.5e-142 509.6 441 59.4
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 8.5e-135 484.6 429 59.7
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.5e-134 481.9 452 54.6
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 5.3e-129 465.3 419 57.5
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.7e-127 460.3 419 55.8
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 4.2e-126 455.7 424 56.6
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 2.1e-117 426.8 230 89.6
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 1.0e-116 424.5 309 66.7
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 5.4e-105 385.6 284 68.0
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 1.6e-104 384.0 240 78.8
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 6.4e-98 362.1 432 46.5
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.7e-95 354.0 271 64.6
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 1.6e-93 347.4 429 46.9
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 2.2e-90 337.0 428 43.2
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 6.6e-87 325.5 383 45.7
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.3e-71 274.6 272 58.1
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 3.4e-67 260.0 151 80.8
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 3.9e-47 193.4 149 69.1
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.3e-46 189.9 113 78.8
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 3.9e-39 166.8 95 81.1
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 7.4e-38 162.5 446 30.0
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.4e-36 158.3 128 60.9
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 1.0e-31 142.1 446 27.8
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 1.5e-22 111.7 96 58.3
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 1.1e-20 105.5 72 76.4
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 7.0e-20 102.8 84 63.1
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 9.1e-12 75.9 57 63.2
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 1.8e-07 61.6 113 28.3
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 5.2e-07 60.1 200 28.0
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.5e-06 58.5 58 51.7
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 2.6e-06 57.8 205 28.3
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 3.4e-06 57.4 58 50.0


User provided reference genes

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