Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0001509 Lotus japonicus HOM05D000473 ORTHO05D006020 6.6e-41 170.2 85 100.0
Lj1g0019242 Lotus japonicus HOM05D000473 ORTHO05D006020 7.4e-32 140.2 80 88.8
Psat5g070960 Pisum sativum HOM05D000473 ORTHO05D006020 3.7e-31 137.9 80 85.0
Medtr3g093020 Medicago truncatula HOM05D000473 ORTHO05D006020 6.2e-31 137.1 80 83.8
Ca_16790_v3 Cicer arietinum L. HOM05D000473 ORTHO05D006020 1.2e-29 132.9 80 83.8
Ca_16806_v3 Cicer arietinum L. HOM05D000473 ORTHO05D006020 1.2e-29 132.9 80 83.8
TPR.G33377 Trifolium pratense HOM05D000473 ORTHO05D006020 3.4e-29 131.3 80 81.2
VMungo0647G1015 Vigna mungo HOM05D000473 ORTHO05D006020 7.6e-29 130.2 80 82.5
Glyma.02G222600 Glycine max HOM05D000473 ORTHO05D006020 1.3e-28 129.4 80 82.5
Glyma.14G189500 Glycine max HOM05D000473 ORTHO05D006020 1.3e-28 129.4 80 82.5
Phvul.008G189300 Phaseolus vulgaris HOM05D000473 ORTHO05D006020 1.7e-28 129.0 80 81.2
arahy.Tifrunner.gnm1.ann1.2S9XG1 Arachis hypogaea HOM05D000473 ORTHO05D006020 2.2e-28 128.6 80 82.5
arahy.Tifrunner.gnm1.ann1.R3RT9K Arachis hypogaea HOM05D000473 ORTHO05D006020 2.2e-28 128.6 80 82.5
LjContig00155g0027148 Lotus japonicus HOM05D000473 ORTHO05D006020 3.8e-28 127.9 80 81.2
Lalb_Chr10g0103101 Lupinus albus HOM05D000473 ORTHO05D006020 1.4e-27 125.9 80 80.0
Medtr5g069180 Medicago truncatula HOM05D000473 ORTHO05D006020 2.4e-27 125.2 80 81.2
Ca_03309_v3 Cicer arietinum L. HOM05D000473 ORTHO05D006020 3.2e-27 124.8 80 80.0
Lalb_Chr17g0344851 Lupinus albus HOM05D000473 ORTHO05D006020 9.3e-27 123.2 80 77.5
Hund09726 Selenicereus undatus HOM05D000473 ORTHO05D006020 3.5e-26 121.3 80 75.0
Psat2g061200 Pisum sativum HOM05D000473 ORTHO05D006020 4.6e-26 120.9 80 77.5
Lalb_Chr04g0252491 Lupinus albus HOM05D000473 ORTHO05D006020 1.3e-25 119.4 80 76.2
arahy.Tifrunner.gnm1.ann1.ZWX0IX Arachis hypogaea HOM05D000473 ORTHO05D006020 2.3e-25 118.6 80 77.5
Atru.chr12.2486 Acer truncatum HOM05D000473 ORTHO05D006020 3.9e-25 117.9 80 73.8
Nitab4.5_0000021g0060 Nicotiana tabacum HOM05D000473 ORTHO05D006020 3.9e-25 117.9 80 72.5
Nitab4.5_0004654g0030 Nicotiana tabacum HOM05D000473 ORTHO05D006020 3.9e-25 117.9 80 72.5
Manes.01G044400 Manihot esculenta HOM05D000473 ORTHO05D006020 5.1e-25 117.5 80 72.5
arahy.Tifrunner.gnm1.ann1.RVXC58 Arachis hypogaea HOM05D000473 ORTHO05D006020 6.7e-25 117.1 80 76.2
Dinv17290 Davidia involucrata HOM05D000473 ORTHO05D006020 8.7e-25 116.7 80 73.8
Peaxi162Scf01447g00016 Petunia axillaris HOM05D000473 ORTHO05D006020 8.7e-25 116.7 80 71.2
CANSAT21G0472 Cannabis sativa HOM05D000473 ORTHO05D006020 1.1e-24 116.3 78 74.4
MD01G1229700 Malus domestica HOM05D000473 ORTHO05D006020 1.5e-24 115.9 80 75.0
Sopen03g021830 Solanum pennellii HOM05D000473 ORTHO05D006020 1.5e-24 115.9 80 71.2
PGSC0003DMG400000556 Solanum tuberosum HOM05D000473 ORTHO05D006020 1.5e-24 115.9 80 71.2
GSVIVG01038662001 Vitis vinifera HOM05D000473 ORTHO05D006020 1.9e-24 115.5 80 73.8
FAN01G1919 Fragaria x ananassa HOM05D000473 ORTHO05D006020 2.5e-24 115.2 80 73.8
Cfa016146 Carpinus fangiana HOM05D000617 ORTHO05D000478 3.3e-24 114.8 80 72.5
Glyma.15G198801 Glycine max HOM05D000473 ORTHO05D006020 3.3e-24 114.8 81 72.8
Dinv29202 Davidia involucrata HOM05D000473 ORTHO05D006020 4.3e-24 114.4 80 72.5
FAN10G3144 Fragaria x ananassa HOM05D000473 ORTHO05D006020 4.3e-24 114.4 80 73.8
PGR042G1852 Punica granatum HOM05D000473 ORTHO05D006020 5.6e-24 114.0 80 70.0
BcaB07g29915 Brassica carinata HOM05D000473 ORTHO05D006020 7.4e-24 113.6 80 68.8
Prupe.2G320300 Prunus persica HOM05D000473 ORTHO05D006020 7.4e-24 113.6 78 75.6
RcHm_v2.0_Chr1g0330391 Rosa chinensis HOM05D000473 ORTHO05D006020 7.4e-24 113.6 80 72.5
Solyc03g080100.4 Solanum lycopersicum HOM05D000473 ORTHO05D006020 7.4e-24 113.6 80 70.0
ECA233G4868 Erigeron canadensis HOM05D000473 ORTHO05D006020 9.6e-24 113.2 80 70.0
Migut.F00138 Erythranthe guttata HOM05D000473 ORTHO05D006020 9.6e-24 113.2 80 72.5
Actinidia34277 Actinidia chinensis HOM05D000473 ORTHO05D006020 1.3e-23 112.8 80 71.2
CSS0030649 Camellia sinensis var. sinensis HOM05D000473 ORTHO05D006020 1.3e-23 112.8 80 71.2
FvH4_7g33060 Fragaria vesca HOM05D000473 ORTHO05D006020 1.3e-23 112.8 80 72.5
Sc13g0010560 Simmondsia chinensis HOM05D000473 ORTHO05D006020 1.3e-23 112.8 80 67.5
SGA_v2.0_scaffold18G08479 Striga asiatica HOM05D000473 ORTHO05D006020 1.3e-23 112.8 80 70.0
FAN03G0590 Fragaria x ananassa HOM05D000473 ORTHO05D006020 1.6e-23 112.5 80 72.5
MD07G1301700 Malus domestica HOM05D000473 ORTHO05D006020 1.6e-23 112.5 80 72.5
Actinidia08708 Actinidia chinensis HOM05D000473 ORTHO05D006020 2.1e-23 112.1 80 70.0
CAN.G303.42 Capsicum annuum HOM05D000473 ORTHO05D006020 2.1e-23 112.1 80 68.8
RcHm_v2.0_Chr1g0383071 Rosa chinensis HOM05D000473 ORTHO05D006020 2.1e-23 112.1 80 71.2
Cpa.g.sc3.167 Carica papaya HOM05D000473 ORTHO05D006020 2.8e-23 111.7 80 70.0
Haze_00309 Corylus avellana HOM05D000473 ORTHO05D006020 2.8e-23 111.7 80 71.2
Potri.012G007300 Populus trichocarpa HOM05D000473 ORTHO05D006020 2.8e-23 111.7 80 70.0
Oeu037982.1 Olea europaea HOM05D000473 ORTHO05D006020 3.7e-23 111.3 80 68.8
Rhsim03G0216900 Rhododendron simsii HOM05D000473 ORTHO05D006020 3.7e-23 111.3 83 67.5
vmacro06455 Vaccinium macrocarpon HOM05D000473 ORTHO05D006020 3.7e-23 111.3 83 67.5
BcaC03g17959 Brassica carinata HOM05D000473 ORTHO05D006020 6.2e-23 110.5 80 66.2
A02p40210 Brassica napus HOM05D000473 ORTHO05D006020 6.2e-23 110.5 80 66.2
BraA02t08989Z Brassica rapa HOM05D000473 ORTHO05D006020 6.2e-23 110.5 80 66.2
CiPaw.06G039600 Carya illinoinensis HOM05D000473 ORTHO05D006020 6.2e-23 110.5 80 71.2
Thecc.03G210200 Theobroma cacao HOM05D000473 ORTHO05D006020 6.2e-23 110.5 80 71.2
Ah.07g204570 Amaranthus hybridus HOM05D000473 ORTHO05D006020 8.2e-23 110.2 80 71.2
COL.COLO4_14384 Corchorus olitorius HOM05D000473 ORTHO05D006020 8.2e-23 110.2 80 70.0
BolC2t12071H Brassica oleracea HOM05D000473 ORTHO05D006020 1.1e-22 109.8 80 66.2
Glyma.04G227000 Glycine max HOM05D000473 ORTHO05D006020 1.1e-22 109.8 81 72.8
Lalb_Chr04g0252481 Lupinus albus HOM05D000473 ORTHO05D006020 1.1e-22 109.8 78 73.1
Peaxi162Scf00815g00020 Petunia axillaris HOM05D000473 ORTHO05D006020 1.1e-22 109.8 80 70.0
QL09p006741 Quercus lobata HOM05D000473 ORTHO05D006020 1.1e-22 109.8 80 70.0
MSTRG.8600 Avicennia marina HOM05D000473 ORTHO05D006020 1.4e-22 109.4 80 66.2
Sp2g22800 Schrenkiella parvula HOM05D000473 ORTHO05D006020 1.4e-22 109.4 80 66.2
C02p60200 Brassica napus HOM05D000473 ORTHO05D006020 1.8e-22 109.0 80 65.0
DCAR_020384 Daucus carota HOM05D000473 ORTHO05D006020 1.8e-22 109.0 80 71.2
AUR62005969 Chenopodium quinoa HOM05D000473 ORTHO05D006020 2.4e-22 108.6 80 70.0
AUR62028101 Chenopodium quinoa HOM05D000473 ORTHO05D006020 2.4e-22 108.6 80 70.0
Gohir.A12G245500 Gossypium hirsutum HOM05D000473 ORTHO05D006020 2.4e-22 108.6 80 68.8
Gohir.D12G246300 Gossypium hirsutum HOM05D000473 ORTHO05D006020 2.4e-22 108.6 80 68.8
Gorai.008G263900 Gossypium raimondii HOM05D000473 ORTHO05D006020 2.4e-22 108.6 80 68.8
Nn3g18762 Nelumbo nucifera HOM05D000473 ORTHO05D006020 2.4e-22 108.6 82 70.7
Phvul.009G038800 Phaseolus vulgaris HOM05D000473 ORTHO05D006020 2.4e-22 108.6 80 66.2
EL10Ac3g05152 Beta vulgaris HOM05D000473 ORTHO05D006020 3.1e-22 108.2 80 70.0
CiPaw.05G206300 Carya illinoinensis HOM05D000473 ORTHO05D006020 3.1e-22 108.2 78 71.8
Duzib084G0795 Durio zibethinus HOM05D000473 ORTHO05D006020 3.1e-22 108.2 80 68.8
PSO063G4186 Papaver somniferum HOM05D000473 ORTHO05D006020 3.1e-22 108.2 80 66.2
Sabra12G0004300 Salix brachista HOM05D000010 ORTHO05D006020 3.1e-22 108.2 80 67.5
Sabra12G0008800 Salix brachista HOM05D000010 ORTHO05D006020 3.1e-22 108.2 80 67.5
BcaNung01244 Brassica carinata HOM05D000473 ORTHO05D006020 4.0e-22 107.8 80 65.0
TAR629G1572 Trochodendron aralioides HOM05D000473 ORTHO05D006020 4.0e-22 107.8 80 66.2
AL6G36180 Arabidopsis lyrata HOM05D000473 ORTHO05D006020 5.3e-22 107.5 81 66.7
BcaNung02011 Brassica carinata HOM05D000473 ORTHO05D006020 5.3e-22 107.5 80 63.8
A06p35360 Brassica napus HOM05D000473 ORTHO05D006020 5.3e-22 107.5 80 63.8
C07p43130 Brassica napus HOM05D000473 ORTHO05D006020 5.3e-22 107.5 80 63.8
BolC7t44840H Brassica oleracea HOM05D000473 ORTHO05D006020 5.3e-22 107.5 80 63.8
BraA06t26461Z Brassica rapa HOM05D000473 ORTHO05D006020 5.3e-22 107.5 80 63.8
Carub.0006s2244 Capsella rubella HOM05D000473 ORTHO05D006020 6.9e-22 107.1 81 65.4
Gohir.1Z049539 Gossypium hirsutum HOM05D000473 ORTHO05D006020 6.9e-22 107.1 80 67.5
Gohir.D04G000025 Gossypium hirsutum HOM05D000473 ORTHO05D006020 6.9e-22 107.1 80 67.5
Gohir.D04G000400 Gossypium hirsutum HOM05D000473 ORTHO05D006020 6.9e-22 107.1 80 67.5
Gorai.012G001300 Gossypium raimondii HOM05D000473 ORTHO05D006020 6.9e-22 107.1 80 67.5
THA.LOC104798990 Tarenaya hassleriana HOM05D000473 ORTHO05D006020 6.9e-22 107.1 80 66.2
TWI23G0704 Tripterygium wilfordii HOM05D000473 ORTHO05D006020 6.9e-22 107.1 80 67.5
Eucgr.K00045 Eucalyptus grandis HOM05D000473 ORTHO05D006020 1.2e-21 106.3 80 66.2
HanXRQChr08g0225901 Helianthus annuus HOM05D000473 ORTHO05D006020 1.2e-21 106.3 80 63.8
Hma1.2p1_0094F.1_g047480 Hydrangea macrophylla HOM05D000473 ORTHO05D006020 1.2e-21 106.3 80 68.8
CARHR188870 Cardamine hirsuta HOM05D000473 ORTHO05D006020 2.0e-21 105.5 81 64.2
PSO782G5162 Papaver somniferum HOM05D000473 ORTHO05D006020 2.0e-21 105.5 80 63.8
Duzib205G0264 Durio zibethinus HOM05D000473 ORTHO05D006020 2.6e-21 105.1 80 66.2
Lsat_1_v5_gn_8_3921 Lactuca sativa HOM05D000617 ORTHO05D000478 2.6e-21 105.1 80 65.0
AT5G24580 Arabidopsis thaliana HOM05D000473 ORTHO05D006020 4.5e-21 104.4 81 64.2
Thhalv10004630m.g Eutrema salsugineum HOM05D000473 ORTHO05D006020 4.5e-21 104.4 81 64.2
Aqoxy5G04365 Aquilegia oxysepala HOM05D000473 ORTHO05D006020 5.8e-21 104.0 80 61.2
Nn1g00470 Nelumbo nucifera HOM05D000473 ORTHO05D006020 5.8e-21 104.0 80 66.2
Sabra15G0002600 Salix brachista HOM05D000473 ORTHO05D006020 5.8e-21 104.0 80 66.2
GSVIVG01001741001 Vitis vinifera HOM05D000473 ORTHO05D006020 5.8e-21 104.0 72 73.6
GSVIVG01003360001 Vitis vinifera HOM05D000473 ORTHO05D006020 5.8e-21 104.0 72 73.6
GSVIVG01026668001 Vitis vinifera HOM05D000473 ORTHO05D006020 5.8e-21 104.0 72 73.6
VMungo1309G2081 Vigna mungo HOM05D000473 ORTHO05D006020 7.6e-21 103.6 88 62.5
Potri.015G003900 Populus trichocarpa HOM05D000473 ORTHO05D006020 1.3e-20 102.8 80 63.8
Aa31LG11G3810 Aethionema arabicum HOM05D000473 ORTHO05D006020 8.4e-20 100.1 80 61.2
Cc02_g00720 Coffea canephora HOM05D000473 ORTHO05D006020 2.7e-18 95.1 80 65.0
PGR142G3498 Punica granatum HOM05D000473 ORTHO05D006020 3.5e-18 94.7 80 60.0
CAN.G65.150 Capsicum annuum HOM05D000473 ORTHO05D006020 4.6e-18 94.4 80 60.0
Lj3A893T78 Lonicera japonica HOM05D000473 ORTHO05D006020 7.9e-18 93.6 80 67.5
Sc19g0000490 Simmondsia chinensis HOM05D000473 ORTHO05D006020 1.8e-17 92.4 78 62.8
Sopen06g029420 Solanum pennellii HOM05D000473 ORTHO05D006020 1.8e-17 92.4 80 61.2
Solyc06g073070.2 Solanum lycopersicum HOM05D000473 ORTHO05D006020 3.0e-17 91.7 80 61.2
Oeu017370.1 Olea europaea HOM05D000473 ORTHO05D006020 6.7e-17 90.5 80 56.2
Nn2g13643 Nelumbo nucifera HOM05D000473 ORTHO05D006020 8.7e-17 90.1 73 67.1
ATR0579G024 Amborella trichopoda HOM05D000473 ORTHO05D006020 3.3e-16 88.2 81 54.3
Sed0009512 Sechium edule HOM05D000473 ORTHO05D006020 6.3e-15 84.0 82 59.8
Nitab4.5_0002895g0010 Nicotiana tabacum HOM05D000473 ORTHO05D006020 1.4e-14 82.8 83 55.4
CDE04G2470 Ceratophyllum demersum HOM05D000473 ORTHO05D006020 1.2e-13 79.7 81 58.0
Lj1A1029T64 Lonicera japonica HOM05D000473 ORTHO05D006020 7.7e-13 77.0 80 55.0
GSVIVG01005642001 Vitis vinifera HOM05D000473 ORTHO05D006020 1.7e-12 75.9 50 78.0
GSVIVG01004734001 Vitis vinifera HOM05D000473 ORTHO05D006020 1.2e-10 69.7 50 72.0
HPP92_022292 Vanilla planifolia HOM05D000473 ORTHO05D006020 2.1e-10 68.9 78 46.2
Os03g0861400 Oryza sativa ssp. japonica HOM05D000473 ORTHO05D006020 8.8e-09 63.5 89 44.9


User provided reference genes

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