Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0001411 Lotus japonicus HOM05D006264 ORTHO05D007739 1.4e-195 686.0 330 100.0
Glyma.06G115200 Glycine max HOM05D006264 ORTHO05D007739 1.0e-182 643.3 330 92.1
Phvul.009G127300 Phaseolus vulgaris HOM05D006264 ORTHO05D007739 1.8e-182 642.5 330 91.5
Glyma.04G247500 Glycine max HOM05D006264 ORTHO05D007739 7.4e-181 637.1 331 91.2
VMungo1309G2910 Vigna mungo HOM05D006264 ORTHO05D007739 9.7e-181 636.7 330 90.3
Medtr3g088580 Medicago truncatula HOM05D006264 ORTHO05D007739 2.6e-178 628.6 330 88.8
arahy.Tifrunner.gnm1.ann1.YYE7NP Arachis hypogaea HOM05D006264 ORTHO05D007739 1.0e-177 626.7 330 88.8
Lalb_Chr11g0066051 Lupinus albus HOM05D006264 ORTHO05D007739 1.0e-177 626.7 330 89.7
arahy.Tifrunner.gnm1.ann1.W8H4W4 Arachis hypogaea HOM05D006264 ORTHO05D007739 5.0e-177 624.4 330 88.5
Lalb_Chr08g0241301 Lupinus albus HOM05D006264 ORTHO05D007739 8.5e-177 623.6 326 89.6
Ca_27657_v3 Cicer arietinum L. HOM05D006264 ORTHO05D007739 2.1e-175 619.0 331 88.8
Thecc.08G126800 Theobroma cacao HOM05D006264 ORTHO05D007739 1.8e-174 615.9 326 87.1
Ciclev10001823m.g Citrus clementina HOM05D006264 ORTHO05D007739 1.3e-172 609.8 326 86.5
TPR.G13464 Trifolium pratense HOM05D006264 ORTHO05D007739 8.2e-172 607.1 330 87.9
MELO3C010482.2 Cucumis melo HOM05D006264 ORTHO05D007739 1.6e-170 602.8 326 84.0
CsaV3_4G028200 Cucumis sativus L. HOM05D006264 ORTHO05D007739 2.0e-170 602.4 326 84.0
QL09p034323 Quercus lobata HOM05D006264 ORTHO05D007739 2.2e-169 599.0 325 84.3
Sed0004807 Sechium edule HOM05D006264 ORTHO05D007739 8.5e-169 597.0 326 83.7
COL.COLO4_04990 Corchorus olitorius HOM05D006264 ORTHO05D007739 1.5e-168 596.3 326 85.0
Gohir.D06G045800 Gossypium hirsutum HOM05D006264 ORTHO05D007739 3.2e-168 595.1 320 86.9
Gorai.010G051000 Gossypium raimondii HOM05D006264 ORTHO05D007739 3.2e-168 595.1 320 86.9
arahy.Tifrunner.gnm1.ann1.9W7Z3M Arachis hypogaea HOM05D006264 ORTHO05D007739 1.2e-167 593.2 338 83.7
PGR044G1646 Punica granatum HOM05D006264 ORTHO05D007739 1.4e-166 589.7 318 85.2
Dinv27304 Davidia involucrata HOM05D006264 ORTHO05D007739 2.0e-165 585.9 326 82.8
TAR381G1225 Trochodendron aralioides HOM05D006264 ORTHO05D007739 2.6e-165 585.5 326 82.8
CANSAT11G2315 Cannabis sativa HOM05D006264 ORTHO05D007739 7.5e-165 583.9 326 83.1
MSTRG.1441 Avicennia marina HOM05D006264 ORTHO05D007739 1.7e-164 582.8 326 81.0
Prupe.1G494700 Prunus persica HOM05D006264 ORTHO05D007739 1.7e-164 582.8 326 82.8
MD15G1347000 Malus domestica HOM05D006264 ORTHO05D007739 2.2e-164 582.4 326 82.5
Actinidia29470 Actinidia chinensis HOM05D006264 ORTHO05D007739 8.3e-164 580.5 326 81.9
Oeu040415.1 Olea europaea HOM05D006264 ORTHO05D007739 7.0e-163 577.4 326 81.3
Nn1g08814 Nelumbo nucifera HOM05D006264 ORTHO05D007739 1.2e-162 576.6 326 81.3
THA.LOC104810199 Tarenaya hassleriana HOM05D006264 ORTHO05D007739 1.6e-162 576.2 323 83.0
CSS0035031 Camellia sinensis var. sinensis HOM05D006264 ORTHO05D007739 2.7e-162 575.5 326 81.0
Eucgr.F04347 Eucalyptus grandis HOM05D006264 ORTHO05D007739 7.7e-162 573.9 326 81.9
Lj4C628G13 Lonicera japonica HOM05D006264 ORTHO05D007739 1.3e-161 573.2 327 81.0
FAN15G0088 Fragaria x ananassa HOM05D006264 ORTHO05D007739 2.3e-161 572.4 327 81.3
FAN24G2929 Fragaria x ananassa HOM05D006264 ORTHO05D007739 8.6e-161 570.5 327 80.7
FAN20G0424 Fragaria x ananassa HOM05D006264 ORTHO05D007739 1.9e-160 569.3 327 81.0
AT1G21760 Arabidopsis thaliana HOM05D006264 ORTHO05D007739 7.2e-160 567.4 325 80.9
RcHm_v2.0_Chr6g0295971 Rosa chinensis HOM05D006264 ORTHO05D007739 7.2e-160 567.4 326 80.7
TAR625G1219 Trochodendron aralioides HOM05D006264 ORTHO05D007739 1.6e-159 566.2 326 78.8
Aa31LG7G5740 Aethionema arabicum HOM05D006264 ORTHO05D007739 2.1e-159 565.8 325 81.2
ClCG11G015780 Citrullus lanatus HOM05D006264 ORTHO05D007739 1.0e-158 563.5 306 83.0
TWI60G1034 Tripterygium wilfordii HOM05D006264 ORTHO05D007739 1.8e-158 562.8 328 80.8
BcaB07g32175 Brassica carinata HOM05D006264 ORTHO05D007739 4.0e-158 561.6 325 80.9
Nitab4.5_0001996g0020 Nicotiana tabacum HOM05D006264 ORTHO05D007739 2.6e-157 558.9 329 76.9
Sp1g19320 Schrenkiella parvula HOM05D006264 ORTHO05D007739 3.4e-157 558.5 325 79.7
Sc02g0005000 Simmondsia chinensis HOM05D006264 ORTHO05D007739 3.4e-157 558.5 326 77.0
Cc10_g12020 Coffea canephora HOM05D006264 ORTHO05D007739 5.7e-157 557.8 326 77.0
Haze_00430 Corylus avellana HOM05D006264 ORTHO05D007739 5.7e-157 557.8 339 79.6
CiPaw.05G220800 Carya illinoinensis HOM05D006264 ORTHO05D007739 7.5e-157 557.4 326 79.8
BcaC05g26098 Brassica carinata HOM05D006264 ORTHO05D007739 1.7e-156 556.2 325 80.3
CARHR022150 Cardamine hirsuta HOM05D006264 ORTHO05D007739 1.7e-156 556.2 325 79.1
PGSC0003DMG400000884 Solanum tuberosum HOM05D006264 ORTHO05D007739 1.7e-156 556.2 326 77.6
CAN.G2.26 Capsicum annuum HOM05D006264 ORTHO05D007739 2.2e-156 555.8 330 76.4
Duzib093G0816 Durio zibethinus HOM05D006264 ORTHO05D007739 6.3e-156 554.3 326 81.0
Solyc11g012830.3 Solanum lycopersicum HOM05D006264 ORTHO05D007739 6.3e-156 554.3 326 77.0
A06p17870 Brassica napus HOM05D006264 ORTHO05D007739 1.8e-155 552.7 341 77.1
BraA06t24877Z Brassica rapa HOM05D006264 ORTHO05D007739 1.8e-155 552.7 341 77.1
Hund17298 Selenicereus undatus HOM05D006264 ORTHO05D007739 4.1e-155 551.6 324 78.7
BolC5t30776H Brassica oleracea HOM05D006264 ORTHO05D007739 1.2e-154 550.1 338 77.5
HanXRQChr05g0151071 Helianthus annuus HOM05D006264 ORTHO05D007739 1.2e-154 550.1 326 76.1
Aqoxy6G00234 Aquilegia oxysepala HOM05D006264 ORTHO05D007739 1.3e-153 546.6 319 78.1
Carub.0001s2122 Capsella rubella HOM05D006264 ORTHO05D007739 5.0e-153 544.7 325 77.5
FvH4_2g27090 Fragaria vesca HOM05D006264 ORTHO05D007739 1.1e-152 543.5 323 77.1
vmacro00839 Vaccinium macrocarpon HOM05D006264 ORTHO05D007739 1.2e-151 540.0 326 76.1
EL10Ac1g01023 Beta vulgaris HOM05D006264 ORTHO05D007739 1.0e-150 537.0 326 75.5
Rhsim11G0069200 Rhododendron simsii HOM05D006264 ORTHO05D007739 1.2e-149 533.5 329 74.5
SGA_v2.0_scaffold24G10459 Striga asiatica HOM05D006264 ORTHO05D007739 1.2e-149 533.5 319 76.8
Migut.C01127 Erythranthe guttata HOM05D006264 ORTHO05D007739 5.8e-149 531.2 326 74.2
MBI16_g07653_MAGBIO Magnolia biondii HOM05D006264 ORTHO05D007739 5.8e-149 531.2 325 75.1
C05p20770 Brassica napus HOM05D006264 ORTHO05D007739 7.5e-149 530.8 323 77.1
AUR62014328 Chenopodium quinoa HOM05D006264 ORTHO05D007739 1.9e-147 526.2 327 74.6
AUR62019071 Chenopodium quinoa HOM05D006264 ORTHO05D007739 5.4e-147 524.6 327 74.3
Manes.02G164400 Manihot esculenta HOM05D006264 ORTHO05D007739 3.5e-146 521.9 326 73.9
Peaxi162Scf00914g00315 Petunia axillaris HOM05D006264 ORTHO05D007739 3.0e-145 518.8 302 76.8
CDE02G1850 Ceratophyllum demersum HOM05D006264 ORTHO05D007739 3.9e-145 518.5 325 71.7
PSO170G1538 Papaver somniferum HOM05D006264 ORTHO05D007739 5.0e-145 518.1 302 77.8
PSO528G0109 Papaver somniferum HOM05D006264 ORTHO05D007739 1.9e-144 516.2 326 73.0
PSO063G0125 Papaver somniferum HOM05D006264 ORTHO05D007739 8.0e-143 510.8 302 76.5
Potri.005G178600 Populus trichocarpa HOM05D006264 ORTHO05D007739 8.0e-143 510.8 326 73.9
ATR0584G291 Amborella trichopoda HOM05D006264 ORTHO05D007739 2.2e-140 502.7 315 72.4
Lsat_1_v5_gn_6_112861 Lactuca sativa HOM05D006264 ORTHO05D007739 2.9e-140 502.3 324 71.6
Potri.002G082500 Populus trichocarpa HOM05D006264 ORTHO05D007739 4.9e-140 501.5 326 72.1
Nitab4.5_0001803g0010 Nicotiana tabacum HOM05D006264 ORTHO05D007739 6.0e-138 494.6 310 73.9
GSVIVG01008855001 Vitis vinifera HOM05D006264 ORTHO05D007739 9.5e-136 487.3 326 72.4
QL09p034368 Quercus lobata HOM05D006264 ORTHO05D007739 1.9e-131 473.0 253 84.6
THA.LOC104801868 Tarenaya hassleriana HOM05D006264 ORTHO05D007739 1.3e-129 466.8 255 84.3
unitig_748.g7689 Utricularia gibba HOM05D006264 ORTHO05D007739 8.6e-129 464.2 320 68.4
HPP92_004401 Vanilla planifolia HOM05D006264 ORTHO05D007739 9.5e-128 460.7 325 64.0
HPP92_027807 Vanilla planifolia HOM05D006264 ORTHO05D007739 1.6e-127 459.9 325 63.7
AL1G34960 Arabidopsis lyrata HOM05D006264 ORTHO05D007739 2.4e-126 456.1 254 82.7
Thhalv10008543m.g Eutrema salsugineum HOM05D006264 ORTHO05D007739 3.8e-124 448.7 256 80.1
Zm00001eb422580 Zea mays HOM05D006264 ORTHO05D007739 8.4e-124 447.6 329 62.0
Pp3c3_38060 Physcomitrium patens HOM05D006264 ORTHO05D007739 1.3e-121 440.3 305 65.9
SMO347G0097 Selaginella moellendorffii HOM05D006264 ORTHO05D007739 1.5e-120 436.8 309 65.0
Sabra02G0064700 Salix brachista HOM05D006264 ORTHO05D007739 2.5e-120 436.0 326 65.6
Gohir.A06G045300 Gossypium hirsutum HOM05D006264 ORTHO05D007739 5.3e-118 428.3 238 82.8
ECA246G2185 Erigeron canadensis HOM05D006264 ORTHO05D007739 2.0e-117 426.4 266 71.8
DCAR_028205 Daucus carota HOM05D006264 ORTHO05D007739 5.1e-113 411.8 254 75.6
Mapoly0151s0012 Marchantia polymorpha HOM05D006264 ORTHO05D007739 1.1e-112 410.6 317 58.7
AagrBONN_evm.TU.Sc2ySwM_117.473 Anthoceros agrestis HOM05D006264 ORTHO05D007739 2.1e-111 406.4 309 59.2
Atru.chr13.1491 Acer truncatum HOM05D006264 ORTHO05D007739 1.5e-104 383.6 220 82.7
Sopen11g007570 Solanum pennellii HOM05D006264 ORTHO05D007739 8.7e-97 357.8 198 82.8
CBR_g39544 Chara braunii HOM05D006264 ORTHO05D007739 3.2e-91 339.3 326 51.2
Psat5g086280 Pisum sativum HOM05D006264 ORTHO05D007739 1.5e-88 330.5 170 87.6
Psat5g086240 Pisum sativum HOM05D006264 ORTHO05D007739 2.8e-63 246.5 132 90.9
Cpa.g.c35582 Carica papaya HOM05D006264 ORTHO05D007739 6.3e-63 245.4 144 81.2
Os04g0431200 Oryza sativa ssp. japonica HOM05D006264 ORTHO05D007739 1.2e-48 198.0 143 58.7
Cpa.g.sc418.8 Carica papaya HOM05D006264 ORTHO05D007739 1.5e-48 197.6 114 79.8
MCO07G330 Micromonas commoda HOM05D006264 ORTHO05D007739 1.8e-46 190.7 314 36.6
PRCOL_00004228 Prasinoderma coloniale HOM05D006264 ORTHO05D007739 1.6e-45 187.6 287 38.0
Cre06.g254450 Chlamydomonas reinhardtii HOM05D006264 ORTHO05D007739 1.8e-38 164.1 303 32.3
Medtr4g068980 Medicago truncatula HOM05D006264 ORTHO05D007739 2.9e-36 156.8 82 86.6
arahy.Tifrunner.gnm1.ann1.XAL0CN Arachis hypogaea HOM05D003584 ORTHO05D004148 3.1e-33 146.7 109 60.6
SEGI_39749 Sequoiadendron giganteum HOM05D006264 ORTHO05D007739 2.2e-31 140.6 111 65.8
Zm00001eb082740 Zea mays HOM05D006264 ORTHO05D007739 7.0e-30 135.6 133 53.4
Cpa.g.c45459 Carica papaya HOM05D006264 ORTHO05D007739 4.6e-29 132.9 78 80.8
Atru.chr13.1492 Acer truncatum HOM05D006264 ORTHO05D007739 8.1e-26 122.1 72 80.6
SEGI_38549 Sequoiadendron giganteum HOM05D006264 ORTHO05D007739 6.8e-25 119.0 68 67.6
Migut.B01582 Erythranthe guttata HOM05D006264 ORTHO05D007739 6.6e-20 102.4 58 77.6
PGSC0003DMG400006698 Solanum tuberosum HOM05D006264 ORTHO05D007739 1.0e-12 78.6 69 53.6
Rhsim11G0069000 Rhododendron simsii HOM05D006264 ORTHO05D007739 1.2e-10 71.6 65 55.4
Actinidia03465 Actinidia chinensis HOM05D006264 ORTHO05D007739 3.4e-08 63.5 36 75.0
SEGI_08627 Sequoiadendron giganteum HOM05D006264 ORTHO05D007739 4.4e-08 63.2 40 65.0
Rhsim11G0068700 Rhododendron simsii HOM05D006264 ORTHO05D007739 9.3e-06 55.5 109 36.7


User provided reference genes

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