Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 0.0e+00 1229.2 614 100.0
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 2.1e-285 985.3 613 79.3
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 3.9e-284 981.1 613 79.8
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 2.8e-282 974.9 613 79.1
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 3.7e-282 974.5 602 80.1
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 6.9e-281 970.3 611 78.9
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 2.0e-280 968.8 608 78.8
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 2.9e-279 964.9 614 78.0
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 1.8e-276 955.7 617 76.8
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 1.1e-267 926.4 610 76.4
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 1.4e-220 770.0 615 64.6
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 1.5e-219 766.5 636 61.5
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 6.4e-218 761.1 640 61.4
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 1.4e-217 760.0 618 64.2
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 5.4e-217 758.1 636 62.3
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 2.0e-216 756.1 642 61.5
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 1.7e-215 753.1 639 61.2
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.7e-215 753.1 639 61.2
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.0e-215 752.3 638 60.7
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 3.3e-214 748.8 620 62.7
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 5.6e-214 748.0 645 60.6
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 3.6e-213 745.3 613 62.3
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 3.6e-213 745.3 621 61.7
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 4.7e-213 745.0 641 60.4
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 8.0e-213 744.2 620 62.6
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 1.1e-212 743.8 630 60.6
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 4.0e-212 741.9 631 60.2
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 2.6e-211 739.2 637 60.6
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 1.7e-210 736.5 502 71.9
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 3.7e-210 735.3 642 59.5
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 4.9e-210 734.9 461 79.0
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 7.0e-209 731.1 635 59.2
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 2.3e-207 726.1 640 59.4
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 3.0e-207 725.7 630 58.4
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 1.5e-206 723.4 608 61.3
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 6.8e-204 714.5 609 61.2
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 8.9e-204 714.1 630 59.4
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 2.6e-203 712.6 634 58.7
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 3.4e-203 712.2 623 59.9
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 9.9e-203 710.7 619 59.8
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 2.2e-202 709.5 654 56.9
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 4.9e-202 708.4 508 69.3
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 9.2e-201 704.1 616 60.1
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 1.2e-200 703.7 606 59.1
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 2.1e-200 703.0 623 59.9
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 2.1e-200 703.0 602 60.0
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 1.3e-199 700.3 623 59.6
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 3.3e-198 695.7 637 56.0
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 4.3e-198 695.3 635 57.0
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 7.3e-198 694.5 637 56.0
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 1.6e-197 693.3 619 59.3
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 6.2e-197 691.4 629 57.1
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 1.1e-196 690.6 630 56.8
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 1.8e-196 689.9 636 58.0
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 5.2e-196 688.3 609 58.5
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 1.2e-195 687.2 602 58.3
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 2.6e-195 686.0 607 58.8
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 4.4e-195 685.3 600 58.8
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 1.1e-193 680.6 614 58.3
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 5.4e-193 678.3 609 58.8
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 7.1e-193 677.9 623 58.6
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 6.0e-192 674.9 614 58.1
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 2.5e-190 669.5 627 55.8
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 4.7e-189 665.2 591 60.4
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 2.4e-188 662.9 631 55.8
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 2.0e-187 659.8 560 60.7
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 2.6e-187 659.4 613 56.0
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 1.7e-186 656.8 441 72.8
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 1.7e-186 656.8 613 55.8
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 6.4e-186 654.8 616 55.8
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 1.1e-185 654.1 602 57.3
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 1.6e-181 640.2 616 54.9
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 2.1e-181 639.8 537 60.1
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 8.1e-181 637.9 609 55.3
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 5.8e-179 631.7 657 52.8
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 1.3e-178 630.6 607 54.0
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 5.4e-177 625.2 610 56.7
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 5.4e-177 625.2 491 62.5
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 5.4e-177 625.2 491 62.5
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 1.6e-176 623.6 443 68.8
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.3e-174 615.9 677 50.8
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 8.1e-173 611.3 595 54.8
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 4.2e-169 599.0 545 57.1
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 4.6e-168 595.5 504 59.3
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 3.0e-167 592.8 401 70.8
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 2.0e-163 580.1 488 58.6
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 2.6e-163 579.7 385 73.2
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 2.6e-163 579.7 529 58.8
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.0e-154 551.2 530 54.9
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 2.1e-152 543.5 391 67.3
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 2.1e-152 543.5 391 67.3
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 4.6e-152 542.3 384 68.5
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 6.1e-152 542.0 522 55.0
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 2.8e-149 533.1 512 53.9
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 7.7e-147 525.0 598 49.0
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 7.7e-147 525.0 387 67.2
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 1.3e-146 524.2 387 67.7
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 1.9e-145 520.4 493 55.4
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 2.7e-144 516.5 447 60.2
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 1.4e-143 514.2 563 48.5
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 2.4e-140 503.4 472 53.8
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.6e-139 500.0 468 56.8
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 1.7e-138 497.3 466 57.3
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 2.5e-129 466.8 454 55.5
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 4.5e-123 446.0 502 46.0
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 5.9e-123 445.7 344 62.2
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 1.0e-119 434.9 406 55.4
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 4.0e-119 433.0 533 44.5
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 5.4e-116 422.5 468 44.4
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 1.5e-113 414.5 521 42.8
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 1.6e-112 411.0 502 44.8
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 1.4e-111 407.9 264 74.6
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 2.0e-99 367.5 257 69.3
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 3.0e-98 363.6 485 39.4
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 1.2e-96 358.2 326 58.6
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 4.1e-92 343.2 305 53.8
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 3.5e-91 340.1 510 41.2
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 4.9e-85 319.7 276 56.2
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.6e-83 314.7 386 45.3
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 3.4e-70 270.4 199 61.8
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.2e-69 267.7 501 32.9
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 2.4e-60 237.7 160 70.6
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 3.5e-51 207.2 195 49.2
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 3.7e-48 197.2 258 47.7
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 4.8e-48 196.8 207 55.6
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 1.1e-47 195.7 133 69.2
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 3.9e-42 177.2 254 39.4
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 1.3e-37 162.2 120 67.5
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 6.1e-35 153.3 122 59.8
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 1.8e-34 151.8 121 58.7
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.1e-33 149.1 122 58.2
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 1.3e-32 145.6 135 54.8
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 1.3e-29 135.6 219 39.3
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 1.6e-19 102.1 87 57.5
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 3.6e-19 100.9 97 50.5
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 9.7e-17 92.8 82 57.3
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.0e-13 82.8 147 37.4
Psat4g088520 Pisum sativum HOM05D005279 ORTHO05D044343 2.9e-13 81.3 78 55.1
Hund21883 Selenicereus undatus HOM05D005279 ORTHO05D037448 1.8e-07 62.0 53 60.4
Hund30008 Selenicereus undatus HOM05D005279 ORTHO05D037448 1.8e-07 62.0 53 60.4
QL01p050333 Quercus lobata HOM05D005279 ORTHO05D037448 2.0e-06 58.5 79 44.3


User provided reference genes

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