Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0001052 Lotus japonicus HOM05D002352 ORTHO05D003724 1.5e-107 392.9 204 100.0
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 5.5e-41 171.8 174 56.3
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 1.2e-40 170.6 168 58.3
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 2.7e-40 169.5 152 61.8
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 6.1e-40 168.3 152 61.8
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 7.9e-40 167.9 152 59.9
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 7.9e-40 167.9 152 60.5
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 1.0e-39 167.5 152 59.9
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 1.0e-39 167.5 152 59.9
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 1.0e-39 167.5 140 66.4
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 1.8e-39 166.8 152 59.9
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 3.0e-39 166.0 152 59.9
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 3.9e-39 165.6 152 59.2
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 3.9e-39 165.6 152 59.2
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 5.1e-39 165.2 152 60.5
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 5.1e-39 165.2 152 59.9
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 5.1e-39 165.2 152 59.9
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 6.7e-39 164.9 152 59.9
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 8.7e-39 164.5 157 57.3
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 8.7e-39 164.5 140 63.6
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 8.7e-39 164.5 152 59.2
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 8.7e-39 164.5 152 59.2
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 8.7e-39 164.5 152 59.9
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 8.7e-39 164.5 152 59.2
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 1.1e-38 164.1 152 59.2
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.1e-38 164.1 152 59.9
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 1.1e-38 164.1 152 58.6
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 1.1e-38 164.1 152 58.6
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 1.1e-38 164.1 152 59.9
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.5e-38 163.7 152 58.6
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 1.5e-38 163.7 152 59.2
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 1.5e-38 163.7 152 58.6
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.5e-38 163.7 152 59.2
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 1.9e-38 163.3 152 58.6
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 1.9e-38 163.3 152 59.2
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 1.9e-38 163.3 150 60.0
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.9e-38 163.3 152 59.2
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 1.9e-38 163.3 152 59.2
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 2.5e-38 162.9 152 59.2
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 2.5e-38 162.9 152 57.9
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.5e-38 162.9 152 57.9
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.5e-38 162.9 152 57.9
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 2.5e-38 162.9 152 59.9
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.5e-38 162.9 152 58.6
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 2.5e-38 162.9 152 59.2
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 2.5e-38 162.9 152 59.2
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 2.5e-38 162.9 152 56.6
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 3.3e-38 162.5 152 58.6
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 3.3e-38 162.5 152 59.2
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 3.3e-38 162.5 152 59.2
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 3.3e-38 162.5 152 59.2
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 3.3e-38 162.5 152 58.6
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 3.3e-38 162.5 152 59.2
Eucgr.F03893 Eucalyptus grandis HOM05D002352 ORTHO05D003724 4.3e-38 162.2 152 59.2
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 4.3e-38 162.2 152 58.6
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 5.7e-38 161.8 152 59.9
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 5.7e-38 161.8 152 58.6
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.7e-38 161.8 152 57.2
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 5.7e-38 161.8 152 58.6
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 5.7e-38 161.8 152 57.9
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 7.4e-38 161.4 152 56.6
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 7.4e-38 161.4 152 59.2
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 7.4e-38 161.4 152 58.6
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 7.4e-38 161.4 152 57.2
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 7.4e-38 161.4 152 57.2
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 7.4e-38 161.4 140 62.9
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 9.7e-38 161.0 152 58.6
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 1.3e-37 160.6 152 57.9
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 2.2e-37 159.8 166 54.2
Lj1A1209T60 Lonicera japonica HOM05D002352 ORTHO05D003724 3.7e-37 159.1 152 56.6
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 3.7e-37 159.1 140 61.4
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 4.8e-37 158.7 152 57.9
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 4.8e-37 158.7 152 57.9
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 6.3e-37 158.3 140 61.4
HPP92_018074 Vanilla planifolia HOM05D002352 ORTHO05D003724 6.3e-37 158.3 152 56.6
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 1.1e-36 157.5 152 57.2
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.1e-36 157.5 152 57.2
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 1.1e-36 157.5 172 49.4
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 1.4e-36 157.1 140 60.7
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 1.8e-36 156.8 140 61.4
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 1.8e-36 156.8 174 51.1
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 2.4e-36 156.4 152 56.6
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 2.4e-36 156.4 152 56.6
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.4e-36 156.4 140 60.0
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 3.1e-36 156.0 140 60.7
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 4.1e-36 155.6 152 55.3
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 4.1e-36 155.6 152 55.3
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 4.1e-36 155.6 152 55.3
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 4.1e-36 155.6 152 55.3
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 4.1e-36 155.6 140 61.4
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 4.1e-36 155.6 152 55.3
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 5.3e-36 155.2 168 51.8
Lalb_Chr21g0313521 Lupinus albus HOM05D002352 ORTHO05D003724 5.3e-36 155.2 174 52.9
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 5.3e-36 155.2 152 55.3
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 5.3e-36 155.2 168 51.8
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 9.0e-36 154.5 140 60.7
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 9.0e-36 154.5 163 53.4
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.2e-35 154.1 140 60.0
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 1.5e-35 153.7 152 55.3
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.5e-35 153.7 140 60.0
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.5e-35 153.7 140 60.0
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 2.6e-35 152.9 163 52.1
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 4.5e-35 152.1 152 55.3
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 5.9e-35 151.8 152 54.6
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 5.9e-35 151.8 152 53.3
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 5.9e-35 151.8 152 53.3
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 5.9e-35 151.8 152 53.3
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 5.9e-35 151.8 152 53.3
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 5.9e-35 151.8 152 53.3
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 7.7e-35 151.4 164 51.8
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 1.0e-34 151.0 164 56.1
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.0e-34 151.0 152 54.6
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 1.3e-34 150.6 157 51.6
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 2.9e-34 149.4 140 57.1
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 2.9e-34 149.4 176 51.1
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 1.1e-33 147.5 140 55.0
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 1.9e-33 146.7 144 54.9
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 5.5e-33 145.2 105 69.5
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 5.5e-33 145.2 152 52.6
Rhsim07G0137600 Rhododendron simsii HOM05D002352 ORTHO05D003724 2.7e-32 142.9 160 49.4
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 3.6e-32 142.5 171 45.6
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 4.6e-32 142.1 163 48.5
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 1.4e-31 140.6 199 45.2
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 1.1e-30 137.5 132 53.8
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 6.3e-29 131.7 124 60.5
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 5.3e-28 128.6 124 58.1
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.2e-27 127.5 122 58.2
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 2.6e-27 126.3 124 57.3
Os01g0816500 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 5.9e-27 125.2 114 53.5
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 1.9e-25 120.2 114 51.8
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 2.6e-22 109.8 120 51.7
SHI23474 Sapria himalayana HOM05D002352 ORTHO05D003724 3.3e-22 109.4 140 47.9
Hma1.2p1_1971F.1_g309590 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 2.4e-20 103.2 91 60.4
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 1.0e-18 97.8 91 57.1
Medtr8g027640 Medicago truncatula HOM05D002352 ORTHO05D003724 5.2e-15 85.5 70 62.9
MCO15G118 Micromonas commoda HOM05D002352 ORTHO05D003724 6.7e-15 85.1 139 37.4
Medtr8g026860 Medicago truncatula HOM05D002352 ORTHO05D003724 4.4e-14 82.4 100 49.0
Cre03.g149800 Chlamydomonas reinhardtii HOM05D002352 ORTHO05D003724 1.7e-10 70.5 140 33.6
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.9e-10 69.7 55 65.5
Actinidia28877 Actinidia chinensis HOM05D002352 ORTHO05D003724 8.5e-10 68.2 90 46.7
Lsat_1_v5_gn_8_117380 Lactuca sativa HOM05D002352 ORTHO05D003724 2.1e-08 63.5 52 63.5
Cfa027164 Carpinus fangiana HOM05D002352 ORTHO05D003724 4.7e-08 62.4 112 33.0
Actinidia39444 Actinidia chinensis HOM05D002352 ORTHO05D003724 2.3e-07 60.1 40 72.5


User provided reference genes

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