Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 4.3e-297 1023.8 507 100.0
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 1.4e-266 922.5 507 89.0
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 3.0e-266 921.4 507 88.8
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 4.1e-263 911.0 504 87.7
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 7.2e-260 900.2 507 87.0
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 2.8e-259 898.3 507 87.0
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 2.8e-259 898.3 507 86.8
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 2.4e-255 885.2 507 85.6
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 8.6e-253 876.7 545 80.4
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 2.8e-251 871.7 545 80.0
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 2.8e-235 818.5 458 86.9
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 1.5e-233 812.8 510 76.7
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 7.5e-233 810.4 514 76.8
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 3.2e-231 805.1 515 76.3
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 5.4e-231 804.3 509 76.6
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 5.4e-231 804.3 509 76.0
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 1.6e-230 802.7 509 77.0
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 6.6e-229 797.3 509 77.0
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 3.3e-228 795.0 509 76.6
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 1.2e-227 793.1 514 75.1
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 1.6e-227 792.7 509 76.0
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 3.1e-226 788.5 509 76.4
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 5.2e-226 787.7 509 76.6
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 3.4e-225 785.0 505 76.8
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 5.8e-225 784.3 508 76.0
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 1.7e-224 782.7 509 75.0
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.9e-223 779.2 509 74.9
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 2.4e-223 778.9 507 75.1
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 4.6e-222 774.6 504 76.0
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 3.9e-221 771.5 509 74.7
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 1.1e-220 770.0 514 73.7
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 9.6e-220 766.9 514 72.8
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 1.6e-219 766.1 514 72.2
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 2.8e-219 765.4 509 74.5
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 2.8e-219 765.4 548 68.6
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.6e-219 765.0 513 73.5
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 1.8e-218 762.7 446 85.0
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 4.0e-218 761.5 514 73.0
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 6.9e-218 760.8 513 73.3
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 1.5e-217 759.6 510 73.9
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 4.4e-217 758.1 511 73.2
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 7.6e-217 757.3 492 76.0
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 9.9e-217 756.9 511 74.2
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 1.3e-216 756.5 509 71.9
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 2.9e-216 755.4 511 72.6
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 3.8e-216 755.0 476 77.5
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 1.1e-215 753.4 509 71.3
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 7.1e-215 750.7 508 73.0
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.2e-214 750.0 513 71.9
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 3.5e-214 748.4 514 71.2
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 4.6e-214 748.0 514 72.0
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 3.9e-213 745.0 506 72.1
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 3.9e-213 745.0 514 70.8
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 5.1e-213 744.6 506 72.3
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.6e-213 744.2 509 73.5
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 8.7e-213 743.8 514 71.4
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 1.5e-212 743.0 509 72.5
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 2.5e-212 742.3 509 72.5
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 2.5e-212 742.3 509 72.3
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 7.3e-212 740.7 509 70.7
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 9.6e-212 740.3 509 73.1
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 9.6e-212 740.3 474 77.0
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 1.3e-211 740.0 511 72.2
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.6e-211 739.6 509 72.1
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 1.6e-211 739.6 517 71.8
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 2.1e-211 739.2 510 72.0
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 2.8e-211 738.8 509 72.7
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 3.6e-211 738.4 510 72.0
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 8.1e-211 737.3 509 72.7
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 1.4e-210 736.5 509 72.7
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 1.8e-210 736.1 510 72.0
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 1.8e-210 736.1 510 72.0
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 2.4e-210 735.7 511 71.8
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 4.0e-210 734.9 507 72.0
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 5.3e-210 734.6 509 72.7
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 6.9e-210 734.2 511 71.0
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 1.5e-209 733.0 509 72.3
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 2.0e-209 732.6 513 71.9
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 2.0e-209 732.6 514 71.0
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 3.4e-209 731.9 509 72.1
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 4.5e-209 731.5 507 72.0
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 5.8e-209 731.1 601 62.7
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 1.7e-208 729.6 509 71.5
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 2.9e-208 728.8 509 71.1
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 4.9e-208 728.0 513 70.2
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 6.4e-208 727.6 476 74.4
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.1e-207 726.9 505 70.3
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 1.4e-207 726.5 526 68.6
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 9.3e-207 723.8 511 70.5
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 2.7e-206 722.2 474 74.3
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 7.9e-206 720.7 507 69.8
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 3.0e-205 718.8 511 69.1
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.0e-205 718.8 501 71.1
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.0e-205 718.8 501 71.1
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 2.5e-204 715.7 514 69.6
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 1.6e-203 713.0 451 77.8
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 8.1e-203 710.7 489 72.8
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 6.9e-202 707.6 508 68.7
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.0e-200 703.7 509 70.7
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.3e-200 703.4 509 70.7
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 1.7e-200 703.0 509 68.4
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 6.4e-200 701.0 508 68.9
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 1.8e-197 693.0 567 63.0
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 6.7e-197 691.0 588 61.7
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.9e-196 689.5 535 67.5
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 6.2e-195 684.5 511 66.9
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 3.4e-193 678.7 514 66.9
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 4.5e-193 678.3 506 66.8
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 1.3e-192 676.8 511 66.1
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.7e-192 676.4 500 68.2
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 2.2e-192 676.0 511 65.9
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 9.3e-191 670.6 508 64.2
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.2e-190 670.2 510 67.6
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.8e-189 666.4 528 64.8
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.0e-189 665.6 510 67.1
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 8.7e-189 664.1 528 65.0
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 1.1e-188 663.7 501 65.7
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 9.7e-188 660.6 473 69.6
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 2.0e-185 652.9 453 71.7
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 2.2e-184 649.4 503 64.4
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 2.5e-183 646.0 511 65.2
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 8.8e-181 637.5 509 64.0
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 1.0e-168 597.4 404 71.3
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 2.2e-163 579.7 404 70.3
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 5.5e-159 565.1 483 61.9
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 2.7e-158 562.8 532 54.3
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 3.4e-156 555.8 547 53.7
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 2.2e-155 553.1 664 48.5
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 1.4e-154 550.4 336 82.1
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 1.5e-143 513.8 417 62.6
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 1.3e-139 500.7 452 58.4
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 1.3e-123 447.6 444 55.0
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.1e-119 434.5 270 80.0
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 1.5e-119 434.1 273 76.2
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 3.5e-113 412.9 280 73.9
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 2.2e-91 340.5 244 71.3
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 3.3e-87 326.6 237 66.7
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.2e-81 308.1 209 70.8
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 3.0e-80 303.5 240 61.7
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 1.1e-74 285.0 219 66.7
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 4.2e-74 283.1 501 39.7
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 2.5e-66 257.3 550 32.5
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.2e-59 234.2 393 36.6
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 1.9e-50 204.5 106 92.5
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 6.1e-49 199.5 136 71.3
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.1e-42 178.7 186 51.6
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.0e-40 170.6 121 69.4
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 8.5e-35 152.5 230 39.1
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 6.1e-33 146.4 114 59.6
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 2.8e-30 137.5 68 92.6
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 4.1e-29 133.7 247 38.1
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.2e-28 132.1 247 37.7
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 1.5e-23 115.2 63 87.3
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 7.0e-21 106.3 196 30.1
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 4.0e-16 90.5 72 63.9
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 2.9e-14 84.3 113 48.7
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 2.7e-12 77.8 61 63.9
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 1.9e-10 71.6 147 32.0
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 1.4e-08 65.5 126 31.7
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 4.0e-08 63.9 36 83.3
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 5.2e-08 63.5 86 38.4
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.4e-07 60.8 36 75.0
SEGI_37303 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 3.4e-07 60.8 74 40.5
ECA233G2956 Erigeron canadensis HOM05D000002 ORTHO05D000001 8.3e-06 56.2 110 39.1


User provided reference genes

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