Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0000519 Lotus japonicus HOM05D007654 ORTHO05D009697 6.1e-39 163.7 83 100.0
Phvul.001G203700 Phaseolus vulgaris HOM05D007654 ORTHO05D009697 1.6e-31 139.0 81 82.7
Glyma.19G207800 Glycine max HOM05D007654 ORTHO05D009697 6.7e-30 133.7 80 78.8
TPR.G9273 Trifolium pratense HOM05D007654 ORTHO05D009697 8.8e-30 133.3 83 79.5
Glyma.03G210600 Glycine max HOM05D007654 ORTHO05D009697 1.1e-29 132.9 80 80.0
arahy.Tifrunner.gnm1.ann1.4942C7 Arachis hypogaea HOM05D007654 ORTHO05D009697 4.4e-29 131.0 77 83.1
Lalb_Chr15g0078691 Lupinus albus HOM05D007654 ORTHO05D009697 7.4e-29 130.2 77 81.8
Medtr7g108290 Medicago truncatula HOM05D000091 ORTHO05D003679 2.2e-28 128.6 82 78.0
QL12p024465 Quercus lobata HOM05D007654 ORTHO05D009697 3.5e-26 121.3 82 72.0
Dinv33011 Davidia involucrata HOM05D007654 ORTHO05D009697 5.9e-26 120.6 83 71.1
GSVIVG01010984001 Vitis vinifera HOM05D007654 ORTHO05D009697 1.3e-25 119.4 83 73.5
Manes.01G215200 Manihot esculenta HOM05D007654 ORTHO05D009697 2.2e-25 118.6 80 71.2
CSS0025949 Camellia sinensis var. sinensis HOM05D007654 ORTHO05D009697 2.9e-25 118.2 83 68.7
Manes.05G066600 Manihot esculenta HOM05D007654 ORTHO05D009697 3.8e-25 117.9 80 70.0
FAN27G0435 Fragaria x ananassa HOM05D000091 ORTHO05D003679 5.0e-25 117.5 73 78.1
Atru.chr5.1253 Acer truncatum HOM05D007654 ORTHO05D009697 1.9e-24 115.5 83 67.5
Nn3g21360 Nelumbo nucifera HOM05D007654 ORTHO05D009697 3.2e-24 114.8 78 71.8
Cc01_g20410 Coffea canephora HOM05D007654 ORTHO05D009697 4.2e-24 114.4 83 68.7
FAN24G2398 Fragaria x ananassa HOM05D000091 ORTHO05D003679 4.2e-24 114.4 73 76.7
MD03G1278400 Malus domestica HOM05D007654 ORTHO05D009697 4.2e-24 114.4 75 76.0
Potri.014G133600 Populus trichocarpa HOM05D007654 ORTHO05D009697 5.5e-24 114.0 83 65.1
Prupe.8G254700 Prunus persica HOM05D007654 ORTHO05D009697 7.2e-24 113.6 73 76.7
Cfa005999 Carpinus fangiana HOM05D007654 ORTHO05D009697 1.2e-23 112.8 81 67.9
FAN15G1923 Fragaria x ananassa HOM05D000091 ORTHO05D003679 1.2e-23 112.8 73 75.3
CiPaw.07G102300 Carya illinoinensis HOM05D007654 ORTHO05D009697 1.6e-23 112.5 79 65.8
Hma1.2p1_0209F.1_g088920 Hydrangea macrophylla HOM05D007654 ORTHO05D009697 1.6e-23 112.5 81 69.1
Gohir.D12G009200 Gossypium hirsutum HOM05D007654 ORTHO05D009697 2.7e-23 111.7 83 67.5
Lsat_1_v5_gn_8_54301 Lactuca sativa HOM05D007654 ORTHO05D009697 3.6e-23 111.3 81 66.7
COL.COLO4_08007 Corchorus olitorius HOM05D000091 ORTHO05D003679 6.1e-23 110.5 83 65.1
Gohir.A12G009300 Gossypium hirsutum HOM05D007654 ORTHO05D009697 6.1e-23 110.5 83 66.3
Gorai.008G009300 Gossypium raimondii HOM05D007654 ORTHO05D009697 6.1e-23 110.5 83 66.3
Ca_09124_v3 Cicer arietinum L. HOM05D000091 ORTHO05D003679 8.0e-23 110.2 64 81.2
MD11G1300800 Malus domestica HOM05D007654 ORTHO05D009697 8.0e-23 110.2 75 72.0
Ciclev10023123m.g Citrus clementina HOM05D007654 ORTHO05D009697 1.4e-22 109.4 83 66.3
PGR119G1851 Punica granatum HOM05D007654 ORTHO05D009697 1.8e-22 109.0 80 65.0
Carub.0005s2957 Capsella rubella HOM05D007654 ORTHO05D009697 2.3e-22 108.6 81 65.4
Haze_04848 Corylus avellana HOM05D007654 ORTHO05D009697 2.3e-22 108.6 110 54.5
CANSAT25G3801 Cannabis sativa HOM05D007654 ORTHO05D009697 3.0e-22 108.2 77 70.1
HanXRQChr11g0350121 Helianthus annuus HOM05D007654 ORTHO05D009697 3.0e-22 108.2 79 67.1
TWI59G0903 Tripterygium wilfordii HOM05D007654 ORTHO05D009697 3.0e-22 108.2 83 67.5
Lsat_1_v5_gn_9_47321 Lactuca sativa HOM05D007654 ORTHO05D009697 4.0e-22 107.8 81 64.2
Solyc09g074620.3 Solanum lycopersicum HOM05D007654 ORTHO05D009697 5.2e-22 107.5 80 65.0
Sopen09g029490 Solanum pennellii HOM05D007654 ORTHO05D009697 5.2e-22 107.5 80 65.0
RcHm_v2.0_Chr6g0292931 Rosa chinensis HOM05D007654 ORTHO05D009697 6.7e-22 107.1 73 71.2
Aa31LG10G16730 Aethionema arabicum HOM05D007654 ORTHO05D009697 8.8e-22 106.7 81 63.0
ECA236G4373 Erigeron canadensis HOM05D007654 ORTHO05D009697 1.1e-21 106.3 72 70.8
arahy.Tifrunner.gnm1.ann1.3EGQ08 Arachis hypogaea HOM05D007654 ORTHO05D009697 1.5e-21 105.9 83 63.9
Duzib138G0105 Durio zibethinus HOM05D007654 ORTHO05D009697 1.5e-21 105.9 80 62.5
AL5G45700 Arabidopsis lyrata HOM05D007654 ORTHO05D009697 2.6e-21 105.1 81 61.7
ClCG09G006300 Citrullus lanatus HOM05D007654 ORTHO05D009697 3.3e-21 104.8 75 62.7
vmacro14977 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 4.4e-21 104.4 70 71.4
CsaV3_7G028850 Cucumis sativus L. HOM05D007654 ORTHO05D009697 7.5e-21 103.6 79 60.8
PGSC0003DMG400011382 Solanum tuberosum HOM05D007654 ORTHO05D009697 7.5e-21 103.6 80 62.5
AUR62034665 Chenopodium quinoa HOM05D007654 ORTHO05D009697 9.7e-21 103.2 78 61.5
Thecc.01G292900 Theobroma cacao HOM05D007654 ORTHO05D009697 1.3e-20 102.8 83 61.4
TAR636G0595 Trochodendron aralioides HOM05D007654 ORTHO05D009697 1.3e-20 102.8 77 58.4
AT3G62920 Arabidopsis thaliana HOM05D007654 ORTHO05D009697 1.7e-20 102.4 81 60.5
BolC8t51346H Brassica oleracea HOM05D007654 ORTHO05D009697 1.7e-20 102.4 81 60.5
Thhalv10006348m.g Eutrema salsugineum HOM05D007654 ORTHO05D009697 1.7e-20 102.4 81 60.5
C08p37630 Brassica napus HOM05D007654 ORTHO05D009697 2.2e-20 102.1 82 59.8
MELO3C016052.2 Cucumis melo HOM05D007654 ORTHO05D009697 2.8e-20 101.7 79 59.5
Sed0025850 Sechium edule HOM05D007654 ORTHO05D009697 3.7e-20 101.3 77 62.3
Hund18071 Selenicereus undatus HOM05D007654 ORTHO05D009697 3.7e-20 101.3 74 63.5
Aqoxy2G03067 Aquilegia oxysepala HOM05D007654 ORTHO05D009697 4.8e-20 100.9 80 61.2
CARHR173210 Cardamine hirsuta HOM05D007654 ORTHO05D009697 4.8e-20 100.9 81 59.3
Eucgr.H01198 Eucalyptus grandis HOM05D007654 ORTHO05D009697 4.8e-20 100.9 80 62.5
BraA09t40886Z Brassica rapa HOM05D007654 ORTHO05D009697 1.1e-19 99.8 81 59.3
Nitab4.5_0002006g0110 Nicotiana tabacum HOM05D007654 ORTHO05D009697 1.8e-19 99.0 69 66.7
FvH4_2g24970 Fragaria vesca HOM05D007654 ORTHO05D009697 2.4e-19 98.6 64 75.0
A09p54770 Brassica napus HOM05D007654 ORTHO05D009697 4.1e-19 97.8 81 58.0
Migut.D00166 Erythranthe guttata HOM05D007654 ORTHO05D009697 7.0e-19 97.1 74 63.5
Oeu057570.1 Olea europaea HOM05D007654 ORTHO05D009697 7.0e-19 97.1 65 69.2
PSO170G3373 Papaver somniferum HOM05D007654 ORTHO05D009697 7.0e-19 97.1 80 58.8
SalBow3G4040 Salvia bowleyana HOM05D007654 ORTHO05D009697 9.1e-19 96.7 78 60.3
Rhsim01G0281900 Rhododendron simsii HOM05D007654 ORTHO05D009697 3.5e-18 94.7 81 61.7
Cpa.g.sc9.182 Carica papaya HOM05D007654 ORTHO05D009697 4.5e-18 94.4 65 72.3
EL10Ac7g17424 Beta vulgaris HOM05D007654 ORTHO05D009697 5.9e-18 94.0 73 61.6
BcaB02g08089 Brassica carinata HOM05D007654 ORTHO05D009697 1.0e-17 93.2 80 53.8
unitig_0.g650 Utricularia gibba HOM05D007654 ORTHO05D009697 2.9e-17 91.7 71 63.4
MBI18_g01968_MAGBIO Magnolia biondii HOM05D007654 ORTHO05D009697 5.0e-17 90.9 66 62.1
arahy.Tifrunner.gnm1.ann1.559R1C Arachis hypogaea HOM05D007654 ORTHO05D009697 8.5e-17 90.1 55 80.0
FAN20G1580 Fragaria x ananassa HOM05D007654 ORTHO05D009697 8.5e-17 90.1 67 71.6
Sabra14G0099700 Salix brachista HOM05D000091 ORTHO05D003679 8.5e-17 90.1 65 67.7
Eucgr.L03487 Eucalyptus grandis HOM05D007654 ORTHO05D009697 2.5e-16 88.6 78 60.3
C04p30320 Brassica napus HOM05D007654 ORTHO05D009697 7.2e-16 87.0 68 60.3
BolC4t24565H Brassica oleracea HOM05D007654 ORTHO05D009697 7.2e-16 87.0 68 60.3
Actinidia21074 Actinidia chinensis HOM05D007654 ORTHO05D009697 1.2e-15 86.3 53 71.7
AUR62008575 Chenopodium quinoa HOM05D000096 ORTHO05D000045 1.2e-15 86.3 61 65.6
Dinv19737 Davidia involucrata HOM05D007654 ORTHO05D009697 2.1e-15 85.5 78 60.3
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 6.1e-15 84.0 61 62.3
Actinidia21070 Actinidia chinensis HOM05D007654 ORTHO05D009697 1.4e-14 82.8 50 78.0
A04p00450 Brassica napus HOM05D007654 ORTHO05D009697 2.3e-14 82.0 65 58.5
BraA04t15764Z Brassica rapa HOM05D007654 ORTHO05D009697 2.3e-14 82.0 65 58.5
Zm00001eb365450 Zea mays HOM05D007654 ORTHO05D009697 2.0e-13 79.0 54 66.7
Nitab4.5_0001102g0070 Nicotiana tabacum HOM05D007654 ORTHO05D009697 4.4e-13 77.8 49 77.6
vmacro14982 Vaccinium macrocarpon HOM05D007654 ORTHO05D009697 1.7e-12 75.9 48 72.9
Lsat_1_v5_gn_0_9401 Lactuca sativa HOM05D007654 ORTHO05D009697 4.8e-12 74.3 57 61.4
Os05g0371500 Oryza sativa ssp. japonica HOM05D007654 ORTHO05D009697 9.1e-11 70.1 50 58.0
SEGI_14019 Sequoiadendron giganteum HOM05D007654 ORTHO05D009697 3.8e-09 64.7 46 56.5
AagrBONN_evm.TU.Sc2ySwM_344.4968 Anthoceros agrestis HOM05D007654 ORTHO05D009697 1.2e-07 59.7 61 44.3
Mapoly0101s0010 Marchantia polymorpha HOM05D007654 ORTHO05D009697 4.7e-07 57.8 53 49.1
Nn4g25957 Nelumbo nucifera HOM05D007654 ORTHO05D009697 4.0e-06 54.7 56 51.8


User provided reference genes

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