Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0000480 Lotus japonicus HOM05D000974 ORTHO05D007456 5.1e-152 541.2 300 100.0
Glyma.04G238050 Glycine max HOM05D000974 ORTHO05D007456 3.8e-115 418.7 297 73.1
Glyma.06G125900 Glycine max HOM05D000974 ORTHO05D007456 1.9e-114 416.4 297 72.7
Ca_16682_v3 Cicer arietinum L. HOM05D000974 ORTHO05D007456 6.0e-113 411.4 301 72.1
Medtr3g090955 Medicago truncatula HOM05D000974 ORTHO05D007456 2.1e-110 402.9 299 69.9
Psat5g079560 Pisum sativum HOM05D000974 ORTHO05D007456 6.3e-110 401.4 299 76.9
VMungo1309G2916 Vigna mungo HOM05D000974 ORTHO05D007456 9.0e-109 397.5 297 67.3
Phvul.009G137800 Phaseolus vulgaris HOM05D000974 ORTHO05D007456 1.2e-108 397.1 297 68.4
TPR.G17305 Trifolium pratense HOM05D000974 ORTHO05D007456 1.2e-108 397.1 305 68.2
Lalb_Chr11g0066601 Lupinus albus HOM05D000974 ORTHO05D007456 6.5e-107 391.3 298 67.4
arahy.Tifrunner.gnm1.ann1.D5FDUQ Arachis hypogaea HOM05D000974 ORTHO05D007456 8.4e-107 391.0 299 66.2
arahy.Tifrunner.gnm1.ann1.LG8YER Arachis hypogaea HOM05D000974 ORTHO05D007456 8.4e-107 391.0 299 66.2
TWI39G1278 Tripterygium wilfordii HOM05D000974 ORTHO05D007456 3.9e-96 355.5 297 61.3
Potri.015G021400 Populus trichocarpa HOM05D000974 ORTHO05D007456 1.7e-94 350.1 299 59.9
Potri.015G021100 Populus trichocarpa HOM05D000974 ORTHO05D007456 4.8e-94 348.6 297 59.9
Manes.06G157800 Manihot esculenta HOM05D000974 ORTHO05D007456 8.2e-94 347.8 297 60.9
Potri.012G031000 Populus trichocarpa HOM05D000974 ORTHO05D007456 1.8e-93 346.7 297 58.9
COL.COLO4_35640 Corchorus olitorius HOM05D000974 ORTHO05D007456 4.1e-93 345.5 297 58.6
GSVIVG01028702001 Vitis vinifera HOM05D000974 ORTHO05D007456 9.1e-93 344.4 297 57.6
AUR62006147 Chenopodium quinoa HOM05D000974 ORTHO05D007456 1.2e-92 344.0 297 60.3
Thecc.03G193600 Theobroma cacao HOM05D000974 ORTHO05D007456 4.5e-92 342.0 297 59.9
Actinidia34202 Actinidia chinensis HOM05D000974 ORTHO05D007456 1.0e-91 340.9 297 60.3
FAN06G4709 Fragaria x ananassa HOM05D000974 ORTHO05D007456 5.0e-91 338.6 305 58.0
RcHm_v2.0_Chr1g0380171 Rosa chinensis HOM05D000974 ORTHO05D007456 6.5e-91 338.2 299 58.9
FvH4_7g31090 Fragaria vesca HOM05D000974 ORTHO05D007456 8.5e-91 337.8 305 58.0
FAN10G1776 Fragaria x ananassa HOM05D000974 ORTHO05D007456 1.1e-90 337.4 305 57.7
FAN03G2436 Fragaria x ananassa HOM05D000974 ORTHO05D006000 2.5e-90 336.3 304 57.9
FAN06G0673 Fragaria x ananassa HOM05D000974 ORTHO05D007456 2.5e-90 336.3 305 57.7
Ciclev10005489m.g Citrus clementina HOM05D000974 ORTHO05D007456 4.2e-90 335.5 307 56.7
FAN10G1818 Fragaria x ananassa HOM05D000974 ORTHO05D006000 4.2e-90 335.5 304 57.9
CSS0027071 Camellia sinensis var. sinensis HOM05D000974 ORTHO05D007456 5.5e-90 335.1 303 57.1
Dinv28331 Davidia involucrata HOM05D000974 ORTHO05D007456 5.5e-90 335.1 252 65.1
MD07G1285800 Malus domestica HOM05D000974 ORTHO05D007456 5.5e-90 335.1 311 57.2
CsaV3_5G000660 Cucumis sativus L. HOM05D000974 ORTHO05D007456 1.2e-89 334.0 298 57.7
PGR142G2075 Punica granatum HOM05D000974 ORTHO05D007456 1.6e-89 333.6 304 56.9
Gohir.D09G178500 Gossypium hirsutum HOM05D000974 ORTHO05D007456 1.8e-88 330.1 296 57.4
Cc02_g01830 Coffea canephora HOM05D000974 ORTHO05D007456 5.1e-88 328.6 296 57.8
ClCG01G000560 Citrullus lanatus HOM05D000974 ORTHO05D007456 6.7e-88 328.2 298 57.0
EL10Ac3g05342 Beta vulgaris HOM05D000974 ORTHO05D007456 1.1e-87 327.4 309 56.3
DCAR_020306 Daucus carota HOM05D000974 ORTHO05D007456 3.3e-87 325.9 298 56.4
Gorai.006G200500 Gossypium raimondii HOM05D000974 ORTHO05D007456 4.4e-87 325.5 296 56.4
Gohir.A09G183700 Gossypium hirsutum HOM05D000974 ORTHO05D007456 7.4e-87 324.7 296 56.8
Prupe.2G308000 Prunus persica HOM05D000974 ORTHO05D002201 7.4e-87 324.7 303 57.8
vmacro10108 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 7.4e-87 324.7 296 56.1
Haze_00118 Corylus avellana HOM05D000974 ORTHO05D007456 1.7e-86 323.6 297 57.2
Rhsim09G0204100 Rhododendron simsii HOM05D000974 ORTHO05D007456 2.2e-86 323.2 296 55.7
Oeu060978.1 Olea europaea HOM05D000974 ORTHO05D007456 3.7e-86 322.4 297 56.6
AUR62019342 Chenopodium quinoa HOM05D000974 ORTHO05D007456 1.4e-85 320.5 297 58.2
MD01G1215900 Malus domestica HOM05D000974 ORTHO05D007456 1.4e-85 320.5 309 54.7
Nitab4.5_0002589g0050 Nicotiana tabacum HOM05D000974 ORTHO05D007456 1.8e-85 320.1 297 54.9
vmacro06564 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 2.4e-85 319.7 338 51.2
Nitab4.5_0005625g0010 Nicotiana tabacum HOM05D000974 ORTHO05D007456 3.1e-85 319.3 300 54.7
Sabra12G0020600 Salix brachista HOM05D000974 ORTHO05D007456 4.1e-85 318.9 310 53.5
Lj1A1013G39 Lonicera japonica HOM05D000974 ORTHO05D007456 9.1e-85 317.8 299 62.2
PSO135G0499 Papaver somniferum HOM05D000974 ORTHO05D007456 4.5e-84 315.5 299 55.2
PSO384G1506 Papaver somniferum HOM05D000974 ORTHO05D007456 2.9e-83 312.8 299 54.8
CANSAT21G0519 Cannabis sativa HOM05D000974 ORTHO05D007456 4.2e-82 308.9 313 52.4
Peaxi162Scf00904g00123 Petunia axillaris HOM05D000974 ORTHO05D007456 5.5e-82 308.5 297 53.2
Sed0023834 Sechium edule HOM05D000974 ORTHO05D007456 1.2e-81 307.4 298 53.7
Thhalv10005277m.g Eutrema salsugineum HOM05D000974 ORTHO05D007456 2.7e-81 306.2 313 52.1
CARHR189450 Cardamine hirsuta HOM05D000974 ORTHO05D007456 4.7e-81 305.4 313 52.4
TAR636G3288 Trochodendron aralioides HOM05D000974 ORTHO05D007456 8.8e-80 301.2 297 55.2
BcaNung01212 Brassica carinata HOM05D000974 ORTHO05D007456 1.1e-79 300.8 313 52.1
Migut.F00239 Erythranthe guttata HOM05D000974 ORTHO05D007456 1.1e-79 300.8 308 51.6
THA.LOC104821367 Tarenaya hassleriana HOM05D000974 ORTHO05D007456 2.0e-79 300.1 306 53.6
A06p34970 Brassica napus HOM05D000974 ORTHO05D007456 2.6e-79 299.7 313 51.4
BraA06t26421Z Brassica rapa HOM05D000974 ORTHO05D007456 2.6e-79 299.7 313 51.4
C07p43580 Brassica napus HOM05D000974 ORTHO05D007456 5.7e-79 298.5 313 51.1
BolC7t44885H Brassica oleracea HOM05D000974 ORTHO05D007456 5.7e-79 298.5 313 51.1
BcaNung01815 Brassica carinata HOM05D000974 ORTHO05D007456 1.7e-78 297.0 313 51.1
SalBow4G2102 Salvia bowleyana HOM05D000974 ORTHO05D007456 8.2e-78 294.7 302 52.3
SGA_v2.0_scaffold192G40573 Striga asiatica HOM05D000974 ORTHO05D007456 8.2e-78 294.7 308 53.2
AL6G35490 Arabidopsis lyrata HOM05D000974 ORTHO05D007456 1.1e-77 294.3 313 50.2
ECA232G4254 Erigeron canadensis HOM05D000974 ORTHO05D007456 1.6e-76 290.4 306 51.6
AT5G24130 Arabidopsis thaliana HOM05D000974 ORTHO05D007456 2.0e-76 290.0 314 50.0
Aqoxy7G00132 Aquilegia oxysepala HOM05D000974 ORTHO05D007456 2.7e-76 289.7 302 53.0
Rhsim03G0199900 Rhododendron simsii HOM05D000974 ORTHO05D007456 5.9e-76 288.5 300 51.7
Carub.0006s2186 Capsella rubella HOM05D000974 ORTHO05D007456 5.0e-75 285.4 312 50.0
Sp2g23180 Schrenkiella parvula HOM05D000974 ORTHO05D007456 5.0e-75 285.4 314 50.0
Cpa.g.sc34.147 Carica papaya HOM05D000974 ORTHO05D007456 6.5e-75 285.0 297 51.5
Lsat_1_v5_gn_9_57980 Lactuca sativa HOM05D000974 ORTHO05D007456 4.2e-74 282.3 303 50.8
Aa31LG11G3400 Aethionema arabicum HOM05D000974 ORTHO05D007456 3.6e-73 279.3 309 48.2
HanXRQChr09g0253031 Helianthus annuus HOM05D000974 ORTHO05D007456 4.7e-73 278.9 285 51.6
Duzib084G1361 Durio zibethinus HOM05D000974 ORTHO05D007456 3.0e-72 276.2 298 52.3
Atru.chr1.258 Acer truncatum HOM05D000974 ORTHO05D007456 7.5e-71 271.6 301 50.2
Lsat_1_v5_gn_2_134181 Lactuca sativa HOM05D000974 ORTHO05D007456 3.7e-70 269.2 264 50.0
Rhsim09G0204200 Rhododendron simsii HOM05D000974 ORTHO05D007456 6.3e-70 268.5 259 53.3
TAR375G0325 Trochodendron aralioides HOM05D000974 ORTHO05D007456 1.4e-69 267.3 299 51.2
unitig_747.g21851 Utricularia gibba HOM05D000974 ORTHO05D007456 9.1e-69 264.6 265 50.9
Cfa016368 Carpinus fangiana HOM05D000974 ORTHO05D007456 2.2e-67 260.0 298 49.3
Lj3A909T48 Lonicera japonica HOM05D000974 ORTHO05D007456 2.9e-67 259.6 268 56.0
MBI07_g34227_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 8.5e-67 258.1 298 49.3
Potri.015G021300 Populus trichocarpa HOM05D000974 ORTHO05D007456 8.8e-64 248.1 206 60.2
HanXRQChr14g0462881 Helianthus annuus HOM05D000974 ORTHO05D007456 2.6e-63 246.5 257 47.5
Zm00001eb238160 Zea mays HOM05D000974 ORTHO05D007456 7.5e-63 245.0 307 46.9
SalBow4G1511 Salvia bowleyana HOM05D000974 ORTHO05D007456 3.7e-62 242.7 302 45.7
DCAR_014533 Daucus carota HOM05D000974 ORTHO05D007456 3.1e-61 239.6 299 47.2
HPP92_005207 Vanilla planifolia HOM05D000974 ORTHO05D007456 4.1e-61 239.2 313 43.5
Nn1g01835 Nelumbo nucifera HOM05D000974 ORTHO05D007456 1.2e-60 237.7 298 48.3
Oeu060979.1 Olea europaea HOM05D000974 ORTHO05D007456 2.6e-55 219.9 203 55.7
CDE10G0850 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 6.6e-51 205.3 301 41.9
QL09p010742 Quercus lobata HOM05D000974 ORTHO05D007456 6.6e-51 205.3 242 47.9
ECA238G2040 Erigeron canadensis HOM05D005084 ORTHO05D006254 1.2e-47 194.5 227 44.1
Sopen03g003300 Solanum pennellii HOM05D000974 ORTHO05D007456 7.8e-44 181.8 185 50.3
PGSC0003DMG400009074 Solanum tuberosum HOM05D000974 ORTHO05D007456 2.5e-42 176.8 138 59.4
Os02g0257200 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 3.1e-40 169.9 307 37.8
Zm00001eb345000 Zea mays HOM05D000974 ORTHO05D007456 1.1e-37 161.4 262 38.5
AagrBONN_evm.TU.Sc2ySwM_117.3541 Anthoceros agrestis HOM05D000974 ORTHO05D007456 7.1e-37 158.7 268 36.6
Os05g0586700 Oryza sativa ssp. japonica HOM05D000974 ORTHO05D007456 1.2e-36 157.9 295 35.9
Mapoly0123s0011 Marchantia polymorpha HOM05D000974 ORTHO05D007456 6.0e-36 155.6 263 35.7
CiPaw.05G257300 Carya illinoinensis HOM05D000974 ORTHO05D007456 5.1e-35 152.5 132 60.6
SMO347G0394 Selaginella moellendorffii HOM05D000974 ORTHO05D007456 1.6e-33 147.5 260 34.2
Lalb_Chr08g0240551 Lupinus albus HOM05D000974 ORTHO05D007456 6.2e-33 145.6 86 74.4
CiPaw.05G257400 Carya illinoinensis HOM05D000974 ORTHO05D007456 8.1e-33 145.2 134 56.7
Hma1.2p1_1655F.1_g295980 Hydrangea macrophylla HOM05D000974 ORTHO05D007456 5.2e-32 142.5 184 44.6
MBI07_g45742_MAGBIO Magnolia biondii HOM05D000974 ORTHO05D007456 1.9e-29 134.0 298 34.2
Lalb_Chr08g0240541 Lupinus albus HOM05D000974 ORTHO05D007456 9.2e-29 131.7 94 71.3
Rhsim02G0197500 Rhododendron simsii HOM05D000974 ORTHO05D007456 1.7e-27 127.5 177 42.4
Lalb_Chr08g0240561 Lupinus albus HOM05D000974 ORTHO05D007456 6.6e-27 125.6 127 54.3
Rhsim04G0082700 Rhododendron simsii HOM05D000974 ORTHO05D007456 8.6e-27 125.2 177 41.8
Pp3c2_19140 Physcomitrium patens HOM05D000974 ORTHO05D007456 2.5e-26 123.6 262 30.9
FAN01G0307 Fragaria x ananassa HOM05D000974 ORTHO05D007456 7.3e-26 122.1 305 32.1
vmacro10109 Vaccinium macrocarpon HOM05D000974 ORTHO05D007456 6.2e-25 119.0 150 46.0
CDE10G0750 Ceratophyllum demersum HOM05D000974 ORTHO05D007456 1.3e-22 111.3 125 48.0
Oeu060977.1 Olea europaea HOM05D000974 ORTHO05D007456 1.7e-22 110.9 119 51.3
Atru.chr1.262 Acer truncatum HOM05D000974 ORTHO05D007456 1.7e-19 100.9 98 54.1
TAR629G1462 Trochodendron aralioides HOM05D000974 ORTHO05D007456 6.6e-19 99.0 103 49.5
ATR0589G055 Amborella trichopoda HOM05D000974 ORTHO05D007456 2.8e-17 93.6 120 44.2
Actinidia08630 Actinidia chinensis HOM05D000974 ORTHO05D007456 4.8e-17 92.8 75 64.0
Pp3c3_31670 Physcomitrium patens HOM05D000974 ORTHO05D007456 2.2e-14 84.0 158 34.8
ATR0589G008 Amborella trichopoda HOM05D000974 ORTHO05D007456 1.4e-13 81.3 95 48.4
COL.COLO4_02792 Corchorus olitorius HOM05D000974 ORTHO05D007456 5.3e-08 62.8 66 50.0
Nn3g19050 Nelumbo nucifera HOM05D000974 ORTHO05D007456 2.9e-06 57.0 94 35.1
DCAR_022594 Daucus carota HOM05D000974 ORTHO05D007456 4.9e-06 56.2 66 53.0


User provided reference genes

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