Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 8.9e-157 557.0 300 100.0
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 4.2e-114 415.2 308 74.7
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 2.7e-113 412.5 308 74.4
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 2.8e-110 402.5 284 75.7
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 4.2e-106 388.7 302 72.5
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 1.6e-105 386.7 301 71.4
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 2.7e-105 386.0 284 72.9
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 2.2e-91 339.7 274 68.6
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.1e-90 337.4 272 68.0
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.8e-85 320.1 253 70.0
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 3.3e-79 299.3 283 64.3
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 9.8e-71 271.2 257 59.5
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 1.4e-69 267.3 296 53.4
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 4.5e-68 262.3 217 66.4
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 1.0e-67 261.2 266 55.3
arahy.Tifrunner.gnm1.ann1.2P21EX Arachis hypogaea HOM05D003937 ORTHO05D004583 1.3e-67 260.8 244 60.2
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 6.5e-67 258.5 296 54.1
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 1.1e-66 257.7 296 51.7
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 1.5e-66 257.3 288 53.5
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 9.4e-66 254.6 296 51.4
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.2e-65 254.2 299 54.2
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 3.6e-65 252.7 296 52.0
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 3.6e-65 252.7 264 55.3
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 5.2e-64 248.8 296 52.4
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 5.7e-63 245.4 297 51.5
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 5.7e-63 245.4 299 53.2
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 5.7e-63 245.4 299 52.8
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 9.8e-63 244.6 288 52.8
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 1.3e-62 244.2 296 50.7
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 1.3e-62 244.2 296 50.7
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 3.7e-62 242.7 283 50.5
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 6.3e-62 241.9 266 52.3
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 1.4e-61 240.7 222 59.5
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 5.4e-61 238.8 296 49.0
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 3.8e-59 232.6 296 49.7
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.1e-58 231.1 299 49.2
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.5e-58 230.7 298 49.0
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 1.9e-58 230.3 285 50.5
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 2.5e-58 229.9 296 49.7
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 5.6e-58 228.8 291 49.5
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 1.4e-53 214.2 288 48.6
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 9.2e-53 211.5 280 48.6
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 4.6e-52 209.1 302 46.7
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 2.3e-51 206.8 275 48.4
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 3.0e-51 206.5 292 45.9
arahy.Tifrunner.gnm1.ann1.X4XIB4 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.9e-51 206.1 179 62.6
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 2.5e-50 203.4 279 47.7
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 4.3e-50 202.6 264 46.2
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 5.6e-50 202.2 263 48.3
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 1.2e-49 201.1 290 45.5
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 2.1e-49 200.3 288 46.2
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 1.4e-48 197.6 288 46.2
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 4.9e-46 189.1 217 53.9
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 7.0e-45 185.3 297 44.4
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 9.2e-45 184.9 260 46.5
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 1.7e-43 180.6 266 46.6
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 3.9e-43 179.5 301 43.5
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 5.0e-43 179.1 281 43.8
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.1e-42 177.9 281 44.5
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 1.1e-42 177.9 291 44.0
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 7.5e-39 165.2 263 42.6
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 1.3e-38 164.5 306 43.5
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 3.5e-36 156.4 265 41.5
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 7.8e-36 155.2 290 41.0
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 1.7e-35 154.1 290 42.1
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 1.9e-34 150.6 265 40.4
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.2e-33 147.9 301 40.9
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 6.8e-32 142.1 143 57.3
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 1.5e-31 141.0 266 42.5
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 2.0e-31 140.6 299 37.5
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 2.0e-31 140.6 291 40.5
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 7.6e-31 138.7 260 42.3
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 2.2e-30 137.1 266 41.0
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 4.9e-30 136.0 142 57.0
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.9e-30 136.0 142 57.0
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.9e-30 136.0 142 57.0
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.1e-29 134.8 142 56.3
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.1e-29 134.8 255 40.0
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 1.4e-29 134.4 262 38.9
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 4.1e-29 132.9 142 54.9
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 4.1e-29 132.9 292 39.0
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 2.1e-28 130.6 275 39.6
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.7e-27 127.5 256 38.7
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.1e-26 124.8 254 39.4
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 2.5e-26 123.6 262 38.2
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 4.3e-26 122.9 313 36.1
Lj5P172T81 Lonicera japonica HOM05D003937 ORTHO05D004583 5.6e-26 122.5 178 44.9
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 9.6e-26 121.7 265 33.2
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 9.6e-26 121.7 236 39.0
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.8e-24 117.5 258 36.0
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 5.2e-24 115.9 264 36.0
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 8.9e-24 115.2 289 35.6
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 2.0e-23 114.0 248 37.1
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 6.4e-22 109.0 261 33.7
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 8.4e-22 108.6 277 37.2
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 4.2e-21 106.3 270 34.4
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 5.4e-21 105.9 265 34.7
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 9.3e-21 105.1 269 33.8
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 2.1e-20 104.0 260 35.4
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 4.6e-20 102.8 264 32.6
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 4.6e-20 102.8 219 35.6
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 2.3e-19 100.5 299 33.1
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.0e-19 100.1 112 54.5
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 3.9e-19 99.8 271 32.5
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 3.9e-19 99.8 262 36.3
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.9e-19 99.8 258 34.9
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.5e-18 97.1 277 36.1
Haze_22798 Corylus avellana HOM05D003937 ORTHO05D004583 7.3e-18 95.5 252 34.9
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 1.3e-17 94.7 269 32.0
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 3.6e-17 93.2 276 30.8
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 6.2e-17 92.4 127 50.4
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.1e-16 91.7 285 33.7
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.8e-16 90.9 251 31.5
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 2.4e-16 90.5 262 32.4
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 3.1e-16 90.1 227 36.6
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 1.2e-15 88.2 83 56.6
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.2e-15 88.2 80 58.8
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 1.2e-15 88.2 83 56.6
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 1.5e-15 87.8 222 35.1
Aqoxy6G01688 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.5e-15 87.8 261 31.8
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.6e-15 87.0 240 33.8
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 3.4e-15 86.7 228 33.3
Haze_22797 Corylus avellana HOM05D003937 ORTHO05D004583 3.4e-15 86.7 249 34.9
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 3.4e-15 86.7 142 41.5
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 2.2e-14 84.0 135 40.7
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 3.8e-14 83.2 82 56.1
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 3.8e-14 83.2 117 47.0
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 1.4e-13 81.3 123 43.9
PGSC0003DMG400009905 Solanum tuberosum HOM05D003937 ORTHO05D004583 1.9e-13 80.9 288 29.5
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 2.4e-13 80.5 263 30.8
Oeu033835.1 Olea europaea HOM05D003937 ORTHO05D004583 2.4e-13 80.5 241 32.0
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 3.2e-13 80.1 70 64.3
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 5.4e-13 79.3 78 59.0
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 1.6e-12 77.8 78 57.7
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.6e-12 77.8 106 46.2
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 6.0e-12 75.9 262 32.1
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 7.9e-12 75.5 266 30.8
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 1.3e-11 74.7 78 55.1
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 1.1e-10 71.6 258 30.2
MELO3C026537.2 Cucumis melo HOM05D003937 ORTHO05D004583 1.9e-10 70.9 257 30.7
FAN04G2017 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.9e-10 70.9 275 31.3
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.9e-10 70.9 273 31.5
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 4.3e-10 69.7 229 31.9
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 5.6e-10 69.3 72 56.9
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 7.4e-10 68.9 273 31.5
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 9.6e-10 68.6 229 32.8
SGA_v2.0_scaffold58G20314 Striga asiatica HOM05D003937 ORTHO05D004583 1.6e-09 67.8 146 34.9
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 2.1e-09 67.4 72 52.8
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 2.1e-09 67.4 193 33.2
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 2.8e-09 67.0 117 41.0
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.8e-09 67.0 256 29.3
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 3.6e-09 66.6 262 28.2
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.1e-08 65.1 260 30.0
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 1.1e-08 65.1 71 50.7
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 1.8e-08 64.3 118 37.3
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 9.0e-08 62.0 255 27.1
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 9.0e-08 62.0 72 50.0
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.2e-07 61.6 77 45.5
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.5e-07 61.2 70 50.0
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.5e-07 61.2 68 48.5
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 2.6e-07 60.5 253 27.3
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 4.5e-07 59.7 68 51.5
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 5.8e-07 59.3 325 27.7
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 7.6e-07 58.9 109 35.8
AagrBONN_evm.TU.Sc2ySwM_117.297 Anthoceros agrestis HOM05D003937 ORTHO05D004583 1.7e-06 57.8 141 29.8
unitig_8.g3603 Utricularia gibba HOM05D000001 ORTHO05D000003 6.4e-06 55.8 250 28.0


User provided reference genes

Program Settings