Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P958T70 Lonicera japonica HOM05D004924 ORTHO05D005896 1.5e-39 165.6 76 100.0
Lj2C517G6 Lonicera japonica HOM05D004924 ORTHO05D005896 3.2e-34 147.9 74 90.5
Lj2C517T7 Lonicera japonica HOM05D004924 ORTHO05D005896 3.0e-32 141.4 74 86.5
Solyc11g011450.2 Solanum lycopersicum HOM05D004924 ORTHO05D005896 3.3e-31 137.9 74 82.4
Sopen11g006240 Solanum pennellii HOM05D004924 ORTHO05D005896 3.3e-31 137.9 74 82.4
PGSC0003DMG400013239 Solanum tuberosum HOM05D004924 ORTHO05D005896 3.3e-31 137.9 74 82.4
Nitab4.5_0001650g0010 Nicotiana tabacum HOM05D004924 ORTHO05D005896 5.6e-31 137.1 74 81.1
Actinidia28798 Actinidia chinensis HOM05D004924 ORTHO05D005896 4.7e-30 134.0 74 82.4
Potri.017G131900 Populus trichocarpa HOM05D004924 ORTHO05D005896 6.2e-30 133.7 74 81.1
Hma1.2p1_0158F.1_g070040 Hydrangea macrophylla HOM05D004924 ORTHO05D005896 8.0e-30 133.3 74 79.7
CAN.G222.65 Capsicum annuum HOM05D004924 ORTHO05D005896 1.1e-29 132.9 74 78.4
Cfa007788 Carpinus fangiana HOM05D004924 ORTHO05D005896 1.1e-29 132.9 74 79.7
Haze_14284 Corylus avellana HOM05D004924 ORTHO05D005896 1.8e-29 132.1 73 80.8
Cfa007787 Carpinus fangiana HOM05D004924 ORTHO05D005896 2.3e-29 131.7 74 78.4
QL02p059388 Quercus lobata HOM05D004924 ORTHO05D005896 2.3e-29 131.7 74 79.7
Atru.chr1.1951 Acer truncatum HOM05D004924 ORTHO05D005896 3.1e-29 131.3 74 79.7
Cfa007789 Carpinus fangiana HOM05D004924 ORTHO05D005896 3.1e-29 131.3 74 78.4
DCAR_011635 Daucus carota HOM05D004924 ORTHO05D005896 3.1e-29 131.3 74 77.0
Medtr3g065140 Medicago truncatula HOM05D004924 ORTHO05D005896 4.0e-29 131.0 74 77.0
Peaxi162Scf00464g00014 Petunia axillaris HOM05D004924 ORTHO05D005896 4.0e-29 131.0 74 79.7
TWI53G1907 Tripterygium wilfordii HOM05D004924 ORTHO05D005896 4.0e-29 131.0 74 75.7
GSVIVG01021786001 Vitis vinifera HOM05D004924 ORTHO05D005896 4.0e-29 131.0 74 79.7
Duzib133G0699 Durio zibethinus HOM05D004924 ORTHO05D005896 5.2e-29 130.6 74 77.0
Sabra17G0109900 Salix brachista HOM05D004924 ORTHO05D005896 6.8e-29 130.2 74 78.4
CiPaw.03G074000 Carya illinoinensis HOM05D004924 ORTHO05D005896 8.9e-29 129.8 74 78.4
Potri.017G132000 Populus trichocarpa HOM05D004924 ORTHO05D005896 8.9e-29 129.8 74 78.4
CiPaw.03G073900 Carya illinoinensis HOM05D004924 ORTHO05D005896 1.2e-28 129.4 74 77.0
QL02p059397 Quercus lobata HOM05D004924 ORTHO05D005896 1.2e-28 129.4 74 78.4
TPR.G23209 Trifolium pratense HOM05D004924 ORTHO05D005896 1.2e-28 129.4 74 79.7
Cc07_g13240 Coffea canephora HOM05D004924 ORTHO05D005896 2.0e-28 128.6 74 77.0
Glyma.11G215100 Glycine max HOM05D004924 ORTHO05D005896 2.6e-28 128.3 74 75.7
Potri.017G132500 Populus trichocarpa HOM05D004924 ORTHO05D005896 2.6e-28 128.3 74 78.4
Cpa.g.sc116.75 Carica papaya HOM05D004924 ORTHO05D005896 3.4e-28 127.9 73 76.7
Ciclev10013082m.g Citrus clementina HOM05D004924 ORTHO05D005896 5.8e-28 127.1 74 77.0
Lj6g0022987 Lotus japonicus HOM05D004924 ORTHO05D005896 5.8e-28 127.1 74 73.0
MD09G1269800 Malus domestica HOM05D004924 ORTHO05D005896 7.5e-28 126.7 74 75.7
Manes.01G120100 Manihot esculenta HOM05D004924 ORTHO05D005896 7.5e-28 126.7 74 74.3
ECA238G2739 Erigeron canadensis HOM05D004924 ORTHO05D005896 9.8e-28 126.3 73 75.3
Eucgr.F02876 Eucalyptus grandis HOM05D004924 ORTHO05D005896 1.3e-27 125.9 74 75.7
RcHm_v2.0_Chr3g0491661 Rosa chinensis HOM05D004924 ORTHO05D005896 1.3e-27 125.9 74 74.3
Thecc.04G063500 Theobroma cacao HOM05D004924 ORTHO05D005896 1.3e-27 125.9 74 74.3
Thecc.K0008300 Theobroma cacao HOM05D004924 ORTHO05D005896 1.3e-27 125.9 74 74.3
TAR622G1008 Trochodendron aralioides HOM05D004924 ORTHO05D005896 1.3e-27 125.9 74 73.0
VMungo1383G1490 Vigna mungo HOM05D004924 ORTHO05D005896 1.3e-27 125.9 74 75.7
FvH4_1g30100 Fragaria vesca HOM05D004924 ORTHO05D005896 1.7e-27 125.6 74 74.3
FAN16G2823 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.7e-27 125.6 74 74.3
Glyma.18G041500 Glycine max HOM05D004924 ORTHO05D005896 1.7e-27 125.6 74 74.3
Lsat_1_v5_gn_2_68260 Lactuca sativa HOM05D004924 ORTHO05D005896 1.7e-27 125.6 73 78.1
Oeu062710.1 Olea europaea HOM05D004924 ORTHO05D005896 1.7e-27 125.6 74 75.7
Phvul.001G229100 Phaseolus vulgaris HOM05D004924 ORTHO05D005896 1.7e-27 125.6 74 74.3
Sabra17G0109800 Salix brachista HOM05D004924 ORTHO05D005896 1.7e-27 125.6 74 75.7
CSS0001998 Camellia sinensis var. sinensis HOM05D004924 ORTHO05D005896 2.2e-27 125.2 74 75.7
CANSAT64G2411 Cannabis sativa HOM05D004924 ORTHO05D005896 2.2e-27 125.2 74 74.3
FvH4_1g27730 Fragaria vesca HOM05D004924 ORTHO05D005896 2.2e-27 125.2 74 73.0
FAN19G2011 Fragaria x ananassa HOM05D004924 ORTHO05D005896 2.2e-27 125.2 74 73.0
Ca_17087_v3 Cicer arietinum L. HOM05D004924 ORTHO05D005896 3.7e-27 124.4 74 74.3
ClCG08G009070 Citrullus lanatus HOM05D004924 ORTHO05D005896 3.7e-27 124.4 73 75.3
Eucgr.F02877 Eucalyptus grandis HOM05D004924 ORTHO05D005896 3.7e-27 124.4 74 73.0
unitig_699.g19298 Utricularia gibba HOM05D004924 ORTHO05D005896 3.7e-27 124.4 74 74.3
vmacro18525 Vaccinium macrocarpon HOM05D004924 ORTHO05D005896 3.7e-27 124.4 74 75.7
HanXRQChr14g0444631 Helianthus annuus HOM05D004924 ORTHO05D005896 4.9e-27 124.0 72 79.2
AT5G16940 Arabidopsis thaliana HOM05D004924 ORTHO05D005896 6.4e-27 123.6 74 71.6
Oeu062709.1 Olea europaea HOM05D004924 ORTHO05D005896 6.4e-27 123.6 74 74.3
MD17G1267700 Malus domestica HOM05D004924 ORTHO05D005896 1.1e-26 122.9 74 74.3
RcHm_v2.0_Chr3g0491731 Rosa chinensis HOM05D004924 ORTHO05D005896 1.1e-26 122.9 74 73.0
RcHm_v2.0_Chr3g0491901 Rosa chinensis HOM05D004924 ORTHO05D005896 1.1e-26 122.9 74 73.0
Prupe.3G165600 Prunus persica HOM05D004924 ORTHO05D005896 1.4e-26 122.5 74 70.3
THA.LOC104820884 Tarenaya hassleriana HOM05D004924 ORTHO05D005896 1.4e-26 122.5 74 70.3
COL.COLO4_17898 Corchorus olitorius HOM05D004924 ORTHO05D005896 1.9e-26 122.1 74 68.9
AL6G27940 Arabidopsis lyrata HOM05D004924 ORTHO05D005896 2.4e-26 121.7 74 71.6
Thhalv10016053m.g Eutrema salsugineum HOM05D004924 ORTHO05D005896 2.4e-26 121.7 74 71.6
RcHm_v2.0_Chr3g0491691 Rosa chinensis HOM05D004924 ORTHO05D005896 3.2e-26 121.3 74 71.6
CARHR196230 Cardamine hirsuta HOM05D004924 ORTHO05D005896 4.1e-26 120.9 74 73.0
Glyma.18G041600 Glycine max HOM05D004924 ORTHO05D005896 5.4e-26 120.6 74 71.6
Gohir.D08G250300 Gossypium hirsutum HOM05D004924 ORTHO05D005896 5.4e-26 120.6 74 70.3
Lalb_Chr15g0085011 Lupinus albus HOM05D004924 ORTHO05D005896 5.4e-26 120.6 74 71.6
PSO017G6719 Papaver somniferum HOM05D004924 ORTHO05D005896 5.4e-26 120.6 74 68.9
Sed0017700 Sechium edule HOM05D004924 ORTHO05D005896 5.4e-26 120.6 74 70.3
Psat5g119920 Pisum sativum HOM05D004924 ORTHO05D005896 7.0e-26 120.2 74 71.6
FAN10G2899 Fragaria x ananassa HOM05D004924 ORTHO05D005896 9.2e-26 119.8 74 71.6
PGR004G0557 Punica granatum HOM05D004924 ORTHO05D005896 9.2e-26 119.8 73 72.6
Aqoxy2G04179 Aquilegia oxysepala HOM05D004924 ORTHO05D005896 1.2e-25 119.4 74 73.0
BcaB01g04965 Brassica carinata HOM05D004924 ORTHO05D005896 1.2e-25 119.4 73 72.6
A03p08080 Brassica napus HOM05D004924 ORTHO05D005896 1.2e-25 119.4 73 72.6
BraA03t10133Z Brassica rapa HOM05D004924 ORTHO05D005896 1.2e-25 119.4 73 72.6
Migut.H02231 Erythranthe guttata HOM05D004924 ORTHO05D005896 1.2e-25 119.4 74 71.6
Psat5g120000 Pisum sativum HOM05D004924 ORTHO05D005896 1.2e-25 119.4 74 68.9
MSTRG.11286 Avicennia marina HOM05D004924 ORTHO05D005896 1.6e-25 119.0 74 70.3
MELO3C026504.2 Cucumis melo HOM05D004924 ORTHO05D005896 1.6e-25 119.0 73 72.6
FAN23G2495 Fragaria x ananassa HOM05D004924 ORTHO05D005896 1.6e-25 119.0 74 71.6
CsaV3_6G036070 Cucumis sativus L. HOM05D004924 ORTHO05D005896 2.0e-25 118.6 73 71.2
Gorai.004G266800 Gossypium raimondii HOM05D004924 ORTHO05D005896 2.0e-25 118.6 74 68.9
MBI19_g44856_MAGBIO Magnolia biondii HOM05D004924 ORTHO05D005896 2.0e-25 118.6 74 68.9
SalBow3G4470 Salvia bowleyana HOM05D004924 ORTHO05D005896 2.7e-25 118.2 74 67.6
Carub.0006s1515 Capsella rubella HOM05D004924 ORTHO05D005896 3.5e-25 117.9 74 70.3
MD09G1269600 Malus domestica HOM05D004924 ORTHO05D005896 3.5e-25 117.9 74 71.6
Aa31LG11G12660 Aethionema arabicum HOM05D004924 ORTHO05D005896 4.6e-25 117.5 74 68.9
arahy.Tifrunner.gnm1.ann1.FH3EPN Arachis hypogaea HOM05D004924 ORTHO05D005896 6.0e-25 117.1 74 66.2
MSTRG.11290 Avicennia marina HOM05D004924 ORTHO05D005896 6.0e-25 117.1 74 67.6
BcaB01g05238 Brassica carinata HOM05D004924 ORTHO05D005896 6.0e-25 117.1 73 69.9
C03p09350 Brassica napus HOM05D004924 ORTHO05D005896 6.0e-25 117.1 73 69.9
BolC3t13429H Brassica oleracea HOM05D004924 ORTHO05D005896 6.0e-25 117.1 73 69.9
Gohir.A08G229800 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.8e-25 116.7 74 67.6
Gohir.D08G250200 Gossypium hirsutum HOM05D004924 ORTHO05D005896 7.8e-25 116.7 74 67.6
Sc11g0004600 Simmondsia chinensis HOM05D004924 ORTHO05D005896 7.8e-25 116.7 74 68.9
Nn3g18375 Nelumbo nucifera HOM05D004924 ORTHO05D005896 1.0e-24 116.3 73 67.1
Gohir.A08G229900 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.3e-24 115.9 74 67.6
Psat5g119960 Pisum sativum HOM05D004924 ORTHO05D005896 2.3e-24 115.2 74 68.9
SGA_v2.0_scaffold108G30967 Striga asiatica HOM05D004924 ORTHO05D005896 3.0e-24 114.8 74 66.2
Gorai.004G267000 Gossypium raimondii HOM05D004924 ORTHO05D005896 3.9e-24 114.4 74 68.9
Peaxi162Scf00464g00013 Petunia axillaris HOM05D004924 ORTHO05D005896 5.0e-24 114.0 113 52.2
Lsat_1_v5_gn_3_63921 Lactuca sativa HOM05D004924 ORTHO05D005896 1.5e-23 112.5 73 72.6
MD17G1267500 Malus domestica HOM05D004924 ORTHO05D005896 4.3e-23 110.9 74 67.6
MD09G1269100 Malus domestica HOM05D004924 ORTHO05D005896 5.6e-23 110.5 74 66.2
ATR0753G109 Amborella trichopoda HOM05D004924 ORTHO05D005896 7.3e-23 110.2 74 63.5
ClCG03G008860 Citrullus lanatus HOM05D004924 ORTHO05D005896 9.5e-23 109.8 73 65.8
MELO3C022822.2 Cucumis melo HOM05D004924 ORTHO05D005896 9.5e-23 109.8 74 66.2
Nitab4.5_0006562g0060 Nicotiana tabacum HOM05D004924 ORTHO05D005896 9.5e-23 109.8 59 79.7
SEGI_33705 Sequoiadendron giganteum HOM05D004924 ORTHO05D005896 2.8e-22 108.2 74 64.9
CsaV3_5G023900 Cucumis sativus L. HOM05D004924 ORTHO05D005896 3.6e-22 107.8 72 66.7
HanXRQChr15g0482911 Helianthus annuus HOM05D004924 ORTHO05D005896 1.1e-21 106.3 73 65.8
Ciclev10013505m.g Citrus clementina HOM05D004924 ORTHO05D005896 1.4e-21 105.9 73 65.8
Pp3c3_1640 Physcomitrium patens HOM05D004924 ORTHO05D005896 1.8e-21 105.5 74 64.9
EL10Ac3g05220 Beta vulgaris HOM05D004924 ORTHO05D005896 5.2e-21 104.0 73 64.4
Os09g0397700 Oryza sativa ssp. japonica HOM05D004924 ORTHO05D005896 5.2e-21 104.0 74 62.2
Glyma.11G214900 Glycine max HOM05D004924 ORTHO05D005896 1.2e-20 102.8 68 70.6
Zm00001eb099200 Zea mays HOM05D004924 ORTHO05D005896 2.6e-20 101.7 74 59.5
AagrBONN_evm.TU.Sc2ySwM_117.508 Anthoceros agrestis HOM05D004924 ORTHO05D005896 7.5e-20 100.1 74 59.5
Gohir.A04G085566 Gossypium hirsutum HOM05D004924 ORTHO05D005896 9.9e-20 99.8 74 62.2
SMO134G0286 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.3e-19 99.4 74 58.1
Ah.13g070610 Amaranthus hybridus HOM05D004924 ORTHO05D005896 2.2e-19 98.6 73 60.3
AUR62006044 Chenopodium quinoa HOM05D004924 ORTHO05D005896 8.3e-19 96.7 73 57.5
Mapoly0175s0005 Marchantia polymorpha HOM05D004924 ORTHO05D005896 8.3e-19 96.7 74 59.5
SMO182G0004 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 1.4e-18 95.9 74 56.8
AUR62035584 Chenopodium quinoa HOM05D004924 ORTHO05D005896 1.9e-18 95.5 73 56.2
AUR62035585 Chenopodium quinoa HOM05D004924 ORTHO05D005896 9.2e-18 93.2 74 62.2
Gohir.D08G250250 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.2e-17 92.8 57 70.2
Gohir.A06G089850 Gossypium hirsutum HOM05D004924 ORTHO05D005896 1.6e-17 92.4 62 64.5
Zm00001eb099170 Zea mays HOM05D004924 ORTHO05D005896 1.6e-17 92.4 61 67.2
AUR62006043 Chenopodium quinoa HOM05D004924 ORTHO05D005896 2.1e-17 92.0 73 58.9
Gohir.A10G199166 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.1e-17 92.0 74 52.7
SMO134G0172 Selaginella moellendorffii HOM05D004924 ORTHO05D005896 2.7e-17 91.7 74 54.1
Zm00001eb099210 Zea mays HOM05D004924 ORTHO05D005896 3.5e-17 91.3 74 55.4
Ah.13g070620 Amaranthus hybridus HOM05D004924 ORTHO05D005896 6.0e-17 90.5 74 60.8
Zm00001eb099190 Zea mays HOM05D004924 ORTHO05D005896 1.3e-16 89.4 63 60.3
FAN28G0301 Fragaria x ananassa HOM05D004924 ORTHO05D005896 3.9e-16 87.8 53 69.8
Gorai.004G266900 Gossypium raimondii HOM05D004924 ORTHO05D005896 6.6e-16 87.0 57 66.7
Gohir.D06G065233 Gossypium hirsutum HOM05D004924 ORTHO05D005896 2.8e-14 81.6 72 48.6
Zm00001eb099180 Zea mays HOM05D004924 ORTHO05D005896 3.4e-12 74.7 76 47.4
PRCOL_00006023 Prasinoderma coloniale HOM05D004924 ORTHO05D005896 1.7e-11 72.4 88 38.6


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