Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P920T18 Lonicera japonica HOM05D003020 ORTHO05D003226 2.1e-85 318.9 157 100.0
Lj1C921T2 Lonicera japonica HOM05D003020 ORTHO05D003226 3.0e-79 298.5 153 96.1
Dinv11798 Davidia involucrata HOM05D003020 ORTHO05D003226 4.8e-21 105.1 196 38.3
FvH4_7g20070 Fragaria vesca HOM05D003020 ORTHO05D003226 1.8e-20 103.2 217 34.6
FAN06G0496 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.8e-20 103.2 218 34.9
FAN03G1700 Fragaria x ananassa HOM05D003020 ORTHO05D003226 7.7e-19 97.8 217 32.7
Dinv31354 Davidia involucrata HOM05D003020 ORTHO05D003226 1.7e-18 96.7 199 37.7
Hma1.2p1_0453F.1_g156030 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 2.3e-18 96.3 186 38.2
Prupe.2G217400 Prunus persica HOM05D003020 ORTHO05D003226 3.8e-18 95.5 223 35.9
RcHm_v2.0_Chr1g0364021 Rosa chinensis HOM05D003020 ORTHO05D003226 6.5e-18 94.7 223 33.2
TAR383G0288 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.1e-17 94.0 163 37.4
CiPaw.02G176000 Carya illinoinensis HOM05D003020 ORTHO05D003226 5.5e-17 91.7 220 36.4
FAN10G0626 Fragaria x ananassa HOM05D003020 ORTHO05D003226 9.5e-17 90.9 237 32.1
Rhsim09G0153800 Rhododendron simsii HOM05D003020 ORTHO05D003226 2.1e-16 89.7 192 37.0
Lalb_Chr03g0036011 Lupinus albus HOM05D003020 ORTHO05D003226 4.7e-16 88.6 170 38.2
Phvul.007G092400 Phaseolus vulgaris HOM05D003020 ORTHO05D003226 6.1e-16 88.2 193 36.3
Actinidia07721 Actinidia chinensis HOM05D003020 ORTHO05D003226 1.0e-15 87.4 213 36.6
Haze_16927 Corylus avellana HOM05D003020 ORTHO05D003226 1.0e-15 87.4 216 32.4
Rhsim09G0153600 Rhododendron simsii HOM05D003020 ORTHO05D003226 1.4e-15 87.0 172 39.0
CiPaw.07G071600 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.8e-15 86.7 220 33.2
VMungo0720G0200 Vigna mungo HOM05D003020 ORTHO05D003226 1.8e-15 86.7 192 38.5
Glyma.10G213000 Glycine max HOM05D003020 ORTHO05D003226 2.3e-15 86.3 164 38.4
FAN01G0050 Fragaria x ananassa HOM05D003020 ORTHO05D003226 6.8e-15 84.7 203 34.5
FAN01G2565 Fragaria x ananassa HOM05D003020 ORTHO05D003226 6.8e-15 84.7 203 34.5
Rhsim09G0153700 Rhododendron simsii HOM05D003020 ORTHO05D003226 6.8e-15 84.7 192 37.5
Lj1C921T3 Lonicera japonica HOM05D003020 ORTHO05D003226 1.2e-14 84.0 173 37.6
Actinidia02960 Actinidia chinensis HOM05D003020 ORTHO05D003226 1.5e-14 83.6 222 33.3
FvH4_7g20060 Fragaria vesca HOM05D003020 ORTHO05D003226 2.0e-14 83.2 202 33.7
FAN06G2932 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.0e-14 83.2 202 33.7
Nitab4.5_0000233g0300 Nicotiana tabacum HOM05D012114 ORTHO05D014153 2.0e-14 83.2 177 35.6
Sed0002867 Sechium edule HOM05D003020 ORTHO05D003226 2.6e-14 82.8 190 31.6
TAR383G0860 Trochodendron aralioides HOM05D003020 ORTHO05D003226 3.4e-14 82.4 196 31.6
Peaxi162Scf00851g00012 Petunia axillaris HOM05D012114 ORTHO05D014153 4.4e-14 82.0 143 35.7
Rhsim09G0153900 Rhododendron simsii HOM05D003020 ORTHO05D003226 4.4e-14 82.0 192 35.4
TAR626G0085 Trochodendron aralioides HOM05D003020 ORTHO05D003226 4.4e-14 82.0 220 31.4
QL08p056680 Quercus lobata HOM05D003020 ORTHO05D003226 5.7e-14 81.6 229 30.1
ClCG09G020480 Citrullus lanatus HOM05D003020 ORTHO05D003226 7.5e-14 81.3 215 29.8
Potri.010G218300 Populus trichocarpa HOM05D003020 ORTHO05D003226 7.5e-14 81.3 205 30.2
Sabra10G0168900 Salix brachista HOM05D003020 ORTHO05D003226 2.2e-13 79.7 205 29.3
Eucgr.J01114 Eucalyptus grandis HOM05D003020 ORTHO05D003226 2.8e-13 79.3 209 30.6
FAN10G4329 Fragaria x ananassa HOM05D003020 ORTHO05D003226 3.7e-13 79.0 202 31.7
Actinidia02961 Actinidia chinensis HOM05D003020 ORTHO05D003226 4.9e-13 78.6 223 32.7
Ca_10586_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 4.9e-13 78.6 189 32.8
TAR626G1849 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.1e-12 77.4 218 30.7
TAR383G0698 Trochodendron aralioides HOM05D003020 ORTHO05D003226 2.4e-12 76.3 231 29.9
CiPaw.01G275700 Carya illinoinensis HOM05D003020 ORTHO05D003226 3.1e-12 75.9 222 31.5
Nitab4.5_0000233g0290 Nicotiana tabacum HOM05D012114 ORTHO05D014153 4.1e-12 75.5 162 36.4
Nitab4.5_0000534g0080 Nicotiana tabacum HOM05D012114 ORTHO05D014153 5.4e-12 75.1 149 36.2
CsaV3_5G025940 Cucumis sativus L. HOM05D003020 ORTHO05D003226 7.0e-12 74.7 178 34.8
Glyma.20G178000 Glycine max HOM05D003020 ORTHO05D003226 7.0e-12 74.7 208 32.7
Potri.008G043300 Populus trichocarpa HOM05D003020 ORTHO05D003226 7.0e-12 74.7 205 30.2
Sabra16G0321600 Salix brachista HOM05D003020 ORTHO05D003226 7.0e-12 74.7 205 31.2
Sabra16G0323200 Salix brachista HOM05D003020 ORTHO05D003226 7.0e-12 74.7 205 31.2
MELO3C025508.2 Cucumis melo HOM05D003020 ORTHO05D003226 9.2e-12 74.3 210 32.4
TAR383G0645 Trochodendron aralioides HOM05D003020 ORTHO05D003226 9.2e-12 74.3 228 29.4
Nitab4.5_0000534g0070 Nicotiana tabacum HOM05D012114 ORTHO05D014153 1.6e-11 73.6 152 37.5
Actinidia02963 Actinidia chinensis HOM05D003020 ORTHO05D003226 2.0e-11 73.2 199 29.6
Actinidia07720 Actinidia chinensis HOM05D000283 ORTHO05D003226 2.0e-11 73.2 114 43.9
TAR625G0330 Trochodendron aralioides HOM05D003020 ORTHO05D003226 2.7e-11 72.8 198 29.8
Lalb_Chr19g0129551 Lupinus albus HOM05D003020 ORTHO05D003226 3.5e-11 72.4 198 34.3
Oeu063752.1 Olea europaea HOM05D003020 ORTHO05D003226 7.8e-11 71.2 178 32.6
Migut.F01762 Erythranthe guttata HOM05D003020 ORTHO05D003226 1.0e-10 70.9 194 31.4
Sabra08G0029900 Salix brachista HOM05D003020 ORTHO05D003226 1.7e-10 70.1 224 30.4
Eucgr.J01120 Eucalyptus grandis HOM05D003020 ORTHO05D003226 3.8e-10 68.9 197 32.0
Actinidia26625 Actinidia chinensis HOM05D003020 ORTHO05D003226 5.0e-10 68.6 100 44.0
Cc02_g11380 Coffea canephora HOM05D003020 ORTHO05D003226 5.0e-10 68.6 135 35.6
SalBow4G1965 Salvia bowleyana HOM05D003020 ORTHO05D003226 5.0e-10 68.6 222 28.8
TPR.G1799 Trifolium pratense HOM05D003020 ORTHO05D003226 6.6e-10 68.2 180 31.7
Manes.10G043600 Manihot esculenta HOM05D003020 ORTHO05D003226 8.6e-10 67.8 181 29.8
TAR636G2901 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.9e-09 66.6 239 26.4
HanXRQChr08g0219501 Helianthus annuus HOM05D003020 ORTHO05D003226 2.5e-09 66.2 174 30.5
AUR62027931 Chenopodium quinoa HOM05D027705 ORTHO05D003226 3.3e-09 65.9 154 31.8
AUR62044142 Chenopodium quinoa HOM05D027705 ORTHO05D003226 3.3e-09 65.9 154 31.8
Migut.F01988 Erythranthe guttata HOM05D003020 ORTHO05D003226 3.3e-09 65.9 185 30.8
Medtr1g095730 Medicago truncatula HOM05D003020 ORTHO05D003226 3.3e-09 65.9 180 32.2
Peaxi162Scf00108g00165 Petunia axillaris HOM05D012114 ORTHO05D014153 3.3e-09 65.9 168 35.1
Cpa.g.sc53.28 Carica papaya HOM05D003020 ORTHO05D003226 4.3e-09 65.5 196 29.1
Eucgr.J01115 Eucalyptus grandis HOM05D003020 ORTHO05D003226 5.6e-09 65.1 110 39.1
Manes.10G044000 Manihot esculenta HOM05D010162 ORTHO05D010383 5.6e-09 65.1 163 30.7
TWI38G1817 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 5.6e-09 65.1 181 30.4
Lsat_1_v5_gn_9_67300 Lactuca sativa HOM05D003020 ORTHO05D014153 7.3e-09 64.7 134 35.8
TPR.G16980 Trifolium pratense HOM05D003020 ORTHO05D003226 7.3e-09 64.7 185 31.9
Manes.07G102900 Manihot esculenta HOM05D003020 ORTHO05D003226 9.5e-09 64.3 199 27.1
Manes.10G043500 Manihot esculenta HOM05D003020 ORTHO05D003226 9.5e-09 64.3 209 34.4
Manes.10G043900 Manihot esculenta HOM05D010162 ORTHO05D010383 9.5e-09 64.3 171 31.6
CiPaw.08G036400 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.2e-08 63.9 199 27.6
Sabra08G0029800 Salix brachista HOM05D031226 ORTHO05D037394 1.2e-08 63.9 195 28.2
Dinv11796 Davidia involucrata HOM05D000336 ORTHO05D002705 2.1e-08 63.2 206 29.6
Manes.10G044100 Manihot esculenta HOM05D010162 ORTHO05D010383 2.1e-08 63.2 170 32.4
Atru.chr12.659 Acer truncatum HOM05D003020 ORTHO05D003226 3.6e-08 62.4 198 30.8
Atru.chr12.686 Acer truncatum HOM05D003020 ORTHO05D003226 3.6e-08 62.4 198 30.8
Cfa001601 Carpinus fangiana HOM05D003020 ORTHO05D003226 3.6e-08 62.4 226 27.4
Lj5g0002057 Lotus japonicus HOM05D003020 ORTHO05D003226 8.0e-08 61.2 194 29.4
Haze_22098 Corylus avellana HOM05D003020 ORTHO05D003226 1.0e-07 60.8 196 29.1
Nitab4.5_0000534g0060 Nicotiana tabacum HOM05D003020 ORTHO05D003226 1.0e-07 60.8 212 29.2
Eucgr.J01119 Eucalyptus grandis HOM05D003020 ORTHO05D003226 1.8e-07 60.1 179 32.4
Glyma.17G063300 Glycine max HOM05D003020 ORTHO05D003226 1.8e-07 60.1 203 29.1
Lj1C921T4 Lonicera japonica HOM05D003020 ORTHO05D003226 1.8e-07 60.1 174 35.6
Cfa013505 Carpinus fangiana HOM05D003020 ORTHO05D003226 4.0e-07 58.9 196 27.6
Nitab4.5_0000534g0090 Nicotiana tabacum HOM05D012114 ORTHO05D014153 4.0e-07 58.9 80 41.2
Rhsim09G0153500 Rhododendron simsii HOM05D003020 ORTHO05D003226 4.0e-07 58.9 217 30.9
Dinv31353 Davidia involucrata HOM05D003020 ORTHO05D003226 5.2e-07 58.5 207 31.4
Lsat_1_v5_gn_8_19121 Lactuca sativa HOM05D003020 ORTHO05D003226 5.2e-07 58.5 192 29.2
Oeu042166.1 Olea europaea HOM05D003020 ORTHO05D003226 6.8e-07 58.2 208 27.9
Manes.10G043400 Manihot esculenta HOM05D010935 ORTHO05D010383 8.9e-07 57.8 162 27.2
CAN.G653.10 Capsicum annuum HOM05D012114 ORTHO05D014153 1.2e-06 57.4 149 28.9
DCAR_019134 Daucus carota HOM05D003020 ORTHO05D003226 1.2e-06 57.4 204 28.4
ECA238G4329 Erigeron canadensis HOM05D003020 ORTHO05D003226 1.2e-06 57.4 206 30.1
MD01G1111500 Malus domestica HOM05D010935 ORTHO05D010383 1.2e-06 57.4 158 31.6
SalBow6G2220 Salvia bowleyana HOM05D003020 ORTHO05D003226 1.2e-06 57.4 179 27.9
AUR62020773 Chenopodium quinoa HOM05D027705 ORTHO05D003226 1.5e-06 57.0 155 31.0
Thecc.10G069300 Theobroma cacao HOM05D003020 ORTHO05D003226 1.5e-06 57.0 220 25.9
Psat6g184920 Pisum sativum HOM05D003020 ORTHO05D003226 2.0e-06 56.6 194 32.0
Potri.010G218500 Populus trichocarpa HOM05D031226 ORTHO05D003226 2.0e-06 56.6 88 40.9
Sopen08g004990 Solanum pennellii HOM05D012114 ORTHO05D014153 2.0e-06 56.6 140 33.6
Thecc.10G069600 Theobroma cacao HOM05D010162 ORTHO05D010383 2.0e-06 56.6 189 30.2
Actinidia04141 Actinidia chinensis HOM05D003020 ORTHO05D003226 2.6e-06 56.2 198 26.8
Gorai.004G031500 Gossypium raimondii HOM05D003020 ORTHO05D003226 2.6e-06 56.2 194 27.8
Solyc08g014110.1 Solanum lycopersicum HOM05D012114 ORTHO05D014153 2.6e-06 56.2 139 33.8
Sopen08g005030 Solanum pennellii HOM05D012114 ORTHO05D014153 2.6e-06 56.2 155 31.6
Ciclev10033392m.g Citrus clementina HOM05D003020 ORTHO05D003226 3.4e-06 55.8 98 38.8
Glyma.20G083700 Glycine max HOM05D003020 ORTHO05D003226 3.4e-06 55.8 195 27.2
Lsat_1_v5_gn_2_114020 Lactuca sativa HOM05D003020 ORTHO05D003226 3.4e-06 55.8 204 29.4
Oeu025224.1 Olea europaea HOM05D003020 ORTHO05D003226 3.4e-06 55.8 167 30.5
PGR044G1573 Punica granatum HOM05D003020 ORTHO05D003226 3.4e-06 55.8 115 33.9
Duzib168G2116 Durio zibethinus HOM05D003020 ORTHO05D003226 4.4e-06 55.5 201 30.3
FvH4_4g08220 Fragaria vesca HOM05D003020 ORTHO05D003226 4.4e-06 55.5 232 23.3
FAN12G0399 Fragaria x ananassa HOM05D003020 ORTHO05D003226 4.4e-06 55.5 232 23.3
VMungo1215G0012 Vigna mungo HOM05D003020 ORTHO05D003226 4.4e-06 55.5 189 29.1
Cpa.g.sc95.49 Carica papaya HOM05D003020 ORTHO05D003226 5.8e-06 55.1 220 25.9
Ciclev10010534m.g Citrus clementina HOM05D003020 ORTHO05D003226 5.8e-06 55.1 197 28.4
FAN07G1960 Fragaria x ananassa HOM05D003020 ORTHO05D003226 5.8e-06 55.1 232 23.7
FAN22G0428 Fragaria x ananassa HOM05D003020 ORTHO05D003226 5.8e-06 55.1 234 23.5
Gohir.A08G023400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 5.8e-06 55.1 196 27.6
MD07G1177700 Malus domestica HOM05D010935 ORTHO05D010383 5.8e-06 55.1 178 31.5
DCAR_006457 Daucus carota HOM05D011460 ORTHO05D010383 7.5e-06 54.7 160 31.2
FAN17G2997 Fragaria x ananassa HOM05D003020 ORTHO05D003226 7.5e-06 54.7 234 23.5
Gohir.D08G033900 Gossypium hirsutum HOM05D003020 ORTHO05D003226 7.5e-06 54.7 194 27.8
DCAR_015284 Daucus carota HOM05D003020 ORTHO05D003226 9.8e-06 54.3 107 38.3
Duzib128G1476 Durio zibethinus HOM05D010162 ORTHO05D010383 9.8e-06 54.3 185 30.8
RcHm_v2.0_Chr4g0402471 Rosa chinensis HOM05D003020 ORTHO05D003226 9.8e-06 54.3 232 24.1


User provided reference genes

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