Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 3.5e-168 595.5 467 100.0
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 3.2e-97 359.8 471 64.5
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 1.2e-96 357.8 454 68.5
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 9.8e-94 348.2 460 67.0
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 4.5e-91 339.3 460 72.6
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 1.1e-89 334.7 455 66.4
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 4.2e-89 332.8 455 66.6
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 5.6e-89 332.4 464 70.9
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 3.0e-87 326.6 455 65.9
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 5.2e-87 325.9 446 74.0
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 4.9e-85 319.3 470 68.9
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 2.4e-84 317.0 452 60.8
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 5.9e-83 312.4 456 66.7
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 4.7e-80 302.8 455 68.4
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 1.8e-79 300.8 474 64.3
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 8.9e-79 298.5 456 63.4
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 2.0e-78 297.4 454 56.2
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 2.6e-78 297.0 448 60.5
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 8.3e-77 292.0 456 65.6
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 1.4e-76 291.2 458 61.8
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 2.7e-75 287.0 446 56.5
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 1.3e-74 284.6 464 65.5
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 1.7e-74 284.3 446 52.9
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 6.6e-74 282.3 452 61.3
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 5.2e-71 272.7 469 63.5
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 8.9e-71 271.9 458 61.4
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 7.5e-70 268.9 469 57.8
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 4.9e-69 266.2 447 48.3
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 1.4e-68 264.6 465 64.9
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 1.4e-68 264.6 466 65.2
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 2.7e-67 260.4 464 48.1
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 6.0e-67 259.2 448 61.6
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 2.3e-66 257.3 470 52.6
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 2.5e-65 253.8 471 61.1
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 4.3e-65 253.1 449 53.9
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 2.1e-64 250.8 447 64.9
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 2.1e-64 250.8 457 63.2
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 6.2e-64 249.2 465 58.7
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 1.1e-63 248.4 471 59.9
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.4e-63 248.1 463 62.9
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 3.1e-63 246.9 454 61.0
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 6.0e-59 232.6 458 62.0
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 7.8e-59 232.3 438 59.8
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 1.0e-58 231.9 461 61.4
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 3.9e-58 229.9 438 62.3
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 2.5e-57 227.3 452 60.2
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 3.3e-57 226.9 438 59.1
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 1.2e-56 224.9 194 63.4
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 6.2e-56 222.6 460 59.6
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 4.0e-55 219.9 461 61.0
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 4.0e-55 219.9 430 66.7
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 1.5e-54 218.0 460 60.2
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 2.0e-54 217.6 457 60.0
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 2.6e-54 217.2 461 60.7
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 5.8e-54 216.1 470 53.4
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 7.6e-54 215.7 442 61.3
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 9.9e-54 215.3 461 60.3
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 2.2e-53 214.2 457 59.7
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 6.4e-53 212.6 451 33.5
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 1.4e-52 211.5 457 59.3
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 4.6e-51 206.5 461 58.4
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 7.8e-51 205.7 461 58.1
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 1.5e-49 201.4 460 57.8
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 1.5e-49 201.4 460 57.8
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 1.5e-49 201.4 363 65.3
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 2.5e-49 200.7 450 59.1
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 3.3e-49 200.3 451 56.5
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 1.3e-48 198.4 451 55.9
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 1.8e-47 194.5 347 55.0
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 2.0e-46 191.0 432 32.6
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 1.4e-44 184.9 464 43.3
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 6.0e-43 179.5 450 56.7
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 7.9e-43 179.1 452 56.2
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 6.4e-37 159.5 341 50.4
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 1.1e-36 158.7 167 55.1
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 1.9e-36 157.9 449 39.0
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 4.8e-32 143.3 189 42.9
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 3.5e-27 127.1 452 47.1
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 6.0e-27 126.3 196 41.3
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 6.3e-16 89.7 159 38.4
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 2.9e-13 80.9 69 58.0
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 2.7e-11 74.3 50 72.0


User provided reference genes

Program Settings