Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P878T38 Lonicera japonica HOM05D007542 ORTHO05D009519 1.5e-78 296.2 156 100.0
Hma1.2p1_1332F.1_g276050 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 5.0e-26 121.7 158 53.2
Hma1.2p1_3935F.1_g338010 Hydrangea macrophylla HOM05D007542 ORTHO05D009519 5.0e-26 121.7 158 53.2
TAR643G0006 Trochodendron aralioides HOM05D007542 ORTHO05D009519 1.1e-25 120.6 158 49.4
GSVIVG01037700001 Vitis vinifera HOM05D007542 ORTHO05D009519 9.4e-25 117.5 158 53.8
QL08p006891 Quercus lobata HOM05D007542 ORTHO05D009519 2.7e-24 115.9 157 48.4
Thecc.07G031100 Theobroma cacao HOM05D007542 ORTHO05D009519 2.3e-23 112.8 157 50.3
Rhsim06G0222000 Rhododendron simsii HOM05D007542 ORTHO05D009519 8.8e-23 110.9 150 50.0
Cfa020302 Carpinus fangiana HOM05D007542 ORTHO05D009519 1.5e-22 110.2 157 46.5
CSS0027066 Camellia sinensis var. sinensis HOM05D007542 ORTHO05D009519 2.0e-22 109.8 159 49.7
Cc05_g14120 Coffea canephora HOM05D007542 ORTHO05D009519 4.4e-22 108.6 165 47.3
Eucgr.F00716 Eucalyptus grandis HOM05D007542 ORTHO05D009519 1.3e-21 107.1 157 43.9
CiPaw.11G192900 Carya illinoinensis HOM05D007542 ORTHO05D009519 1.7e-21 106.7 160 46.9
COL.COLO4_09703 Corchorus olitorius HOM05D007542 ORTHO05D009519 2.8e-21 105.9 160 48.8
MD11G1212200 Malus domestica HOM05D007542 ORTHO05D009519 2.8e-21 105.9 162 48.8
CAN.G492.20 Capsicum annuum HOM05D007542 ORTHO05D009519 4.8e-21 105.1 163 47.9
MSTRG.6947 Avicennia marina HOM05D007542 ORTHO05D009519 8.2e-21 104.4 157 45.9
Manes.03G133100 Manihot esculenta HOM05D007542 ORTHO05D009519 8.2e-21 104.4 160 48.8
Dinv22244 Davidia involucrata HOM05D007542 ORTHO05D009519 1.4e-20 103.6 149 51.0
Duzib170G0581 Durio zibethinus HOM05D007542 ORTHO05D009519 1.8e-20 103.2 158 47.5
TAR626G0917 Trochodendron aralioides HOM05D007542 ORTHO05D009519 3.1e-20 102.4 153 47.1
Nn1g03444 Nelumbo nucifera HOM05D007542 ORTHO05D009519 7.0e-20 101.3 164 44.5
MD03G1195800 Malus domestica HOM05D007542 ORTHO05D009519 9.1e-20 100.9 162 46.3
Cpa.g.sc12.265 Carica papaya HOM05D007542 ORTHO05D009519 1.2e-19 100.5 158 46.8
TAR624G0015 Trochodendron aralioides HOM05D007542 ORTHO05D009519 2.6e-19 99.4 156 44.9
DCAR_016720 Daucus carota HOM05D007542 ORTHO05D009519 4.5e-19 98.6 155 46.5
Ciclev10009585m.g Citrus clementina HOM05D007542 ORTHO05D009519 5.9e-19 98.2 155 47.1
Nn1g07236 Nelumbo nucifera HOM05D007542 ORTHO05D009519 7.7e-19 97.8 158 43.7
PGSC0003DMG400014384 Solanum tuberosum HOM05D007542 ORTHO05D009519 1.0e-18 97.4 166 44.6
Gohir.D01G069700 Gossypium hirsutum HOM05D007542 ORTHO05D009519 2.2e-18 96.3 160 46.9
Gorai.002G092100 Gossypium raimondii HOM05D007542 ORTHO05D009519 2.2e-18 96.3 159 45.9
Medtr5g093430 Medicago truncatula HOM05D007542 ORTHO05D009519 2.9e-18 95.9 163 43.6
LjContig00272g0021523 Lotus japonicus HOM05D007542 ORTHO05D009519 5.0e-18 95.1 156 44.2
Dinv40786 Davidia involucrata HOM05D007542 ORTHO05D009519 6.5e-18 94.7 160 47.5
Potri.011G087000 Populus trichocarpa HOM05D007542 ORTHO05D009519 2.5e-17 92.8 160 45.6
Psat2g012400 Pisum sativum HOM05D007542 ORTHO05D009519 3.2e-17 92.4 160 40.0
TWI38G0725 Tripterygium wilfordii HOM05D007542 ORTHO05D009519 4.2e-17 92.0 157 44.6
Aqoxy1G03049 Aquilegia oxysepala HOM05D007542 ORTHO05D009519 7.2e-17 91.3 157 42.0
FAN16G3720 Fragaria x ananassa HOM05D007542 ORTHO05D009519 9.4e-17 90.9 161 42.2
Prupe.4G220200 Prunus persica HOM05D007542 ORTHO05D009519 9.4e-17 90.9 160 43.8
Atru.chr2.3499 Acer truncatum HOM05D007542 ORTHO05D009519 1.2e-16 90.5 160 44.4
FAN21G0453 Fragaria x ananassa HOM05D007542 ORTHO05D009519 1.2e-16 90.5 161 42.2
Nitab4.5_0000328g0130 Nicotiana tabacum HOM05D007542 ORTHO05D009519 2.1e-16 89.7 162 44.4
FvH4_3g23270 Fragaria vesca HOM05D007542 ORTHO05D009519 2.7e-16 89.4 161 41.6
Medtr5g093440 Medicago truncatula HOM05D007542 ORTHO05D009519 2.7e-16 89.4 160 41.2
Sopen07g033030 Solanum pennellii HOM05D007542 ORTHO05D009519 8.0e-16 87.8 162 39.5
TPR.G17892 Trifolium pratense HOM05D007542 ORTHO05D009519 8.0e-16 87.8 160 40.0
Psat2g012360 Pisum sativum HOM05D007542 ORTHO05D009519 2.3e-15 86.3 161 41.0
Phvul.006G046800 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 3.0e-15 85.9 157 39.5
Prupe.4G220300 Prunus persica HOM05D007542 ORTHO05D009519 3.0e-15 85.9 162 40.7
TPR.G1179 Trifolium pratense HOM05D007542 ORTHO05D009519 3.9e-15 85.5 160 40.0
Nitab4.5_0002826g0080 Nicotiana tabacum HOM05D007542 ORTHO05D009519 5.2e-15 85.1 162 40.7
Glyma.14G021700 Glycine max HOM05D007542 ORTHO05D009519 8.8e-15 84.3 155 41.3
RcHm_v2.0_Chr5g0040991 Rosa chinensis HOM05D007542 ORTHO05D009519 8.8e-15 84.3 158 42.4
Actinidia05075 Actinidia chinensis HOM05D007542 ORTHO05D009519 1.1e-14 84.0 141 41.8
Oeu026398.1 Olea europaea HOM05D007542 ORTHO05D009519 1.5e-14 83.6 158 42.4
CAN.G337.69 Capsicum annuum HOM05D007542 ORTHO05D009519 2.0e-14 83.2 158 41.1
Oeu008012.1 Olea europaea HOM05D007542 ORTHO05D009519 2.6e-14 82.8 150 40.0
Phvul.008G269700 Phaseolus vulgaris HOM05D007542 ORTHO05D009519 2.6e-14 82.8 159 43.4
FAN25G0364 Fragaria x ananassa HOM05D007542 ORTHO05D009519 3.3e-14 82.4 161 42.9
FAN25G1685 Fragaria x ananassa HOM05D007542 ORTHO05D009519 3.3e-14 82.4 161 42.9
Manes.15G067900 Manihot esculenta HOM05D007542 ORTHO05D009519 4.4e-14 82.0 159 42.8
Sabra11G0071000 Salix brachista HOM05D007542 ORTHO05D009519 4.4e-14 82.0 159 42.8
FAN11G1962 Fragaria x ananassa HOM05D007542 ORTHO05D009519 1.3e-13 80.5 150 40.7
Solyc10g006150.3 Solanum lycopersicum HOM05D007542 ORTHO05D009519 3.7e-13 79.0 166 39.8
Lalb_Chr04g0248281 Lupinus albus HOM05D007542 ORTHO05D009519 8.2e-13 77.8 158 40.5
Ca_06340_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 1.1e-12 77.4 160 38.1
MSTRG.12988 Avicennia marina HOM05D007542 ORTHO05D009519 3.1e-12 75.9 152 38.8
Migut.H01805 Erythranthe guttata HOM05D007542 ORTHO05D009519 4.5e-11 72.0 161 38.5
Lj6g0015208 Lotus japonicus HOM05D007542 ORTHO05D009519 4.5e-11 72.0 60 65.0
PGSC0003DMG400022335 Solanum tuberosum HOM05D007542 ORTHO05D009519 4.5e-11 72.0 142 37.3
VMungo0647G1207 Vigna mungo HOM05D007542 ORTHO05D009519 4.5e-11 72.0 160 37.5
Ca_25812_v3 Cicer arietinum L. HOM05D007542 ORTHO05D009519 7.7e-11 71.2 157 36.9
Nitab4.5_0004829g0120 Nicotiana tabacum HOM05D007542 ORTHO05D009519 7.7e-11 71.2 53 71.7
PSO541G2394 Papaver somniferum HOM05D007542 ORTHO05D009519 1.0e-10 70.9 156 37.2
arahy.Tifrunner.gnm1.ann1.C8UBJW Arachis hypogaea HOM05D007542 ORTHO05D009519 1.7e-10 70.1 74 56.8
arahy.Tifrunner.gnm1.ann1.T42YYR Arachis hypogaea HOM05D007542 ORTHO05D009519 1.7e-10 70.1 74 56.8
MELO3C014190.2 Cucumis melo HOM05D007542 ORTHO05D009519 3.8e-10 68.9 158 37.3
MBI10_g09179_MAGBIO Magnolia biondii HOM05D007542 ORTHO05D009519 3.8e-10 68.9 156 34.0
VMungo0540G1120 Vigna mungo HOM05D007542 ORTHO05D009519 5.0e-10 68.6 63 58.7
Lj6g0001233 Lotus japonicus HOM05D007542 ORTHO05D009519 1.5e-09 67.0 174 36.2
CsaV3_3G004930 Cucumis sativus L. HOM05D007542 ORTHO05D009519 1.9e-09 66.6 158 34.8
Glyma.18G092800 Glycine max HOM05D007542 ORTHO05D009519 2.5e-09 66.2 63 55.6
arahy.Tifrunner.gnm1.ann1.ENS6UV Arachis hypogaea HOM05D007542 ORTHO05D009519 5.5e-09 65.1 83 45.8
Sc16g0005830 Simmondsia chinensis HOM05D007542 ORTHO05D009519 1.2e-08 63.9 83 51.8
Glyma.08G319700 Glycine max HOM05D007542 ORTHO05D009519 4.7e-08 62.0 63 54.0
Sc03g0008420 Simmondsia chinensis HOM05D007542 ORTHO05D009519 4.7e-08 62.0 54 64.8
ATR0317G118 Amborella trichopoda HOM05D007542 ORTHO05D009519 1.4e-07 60.5 67 43.3
Medtr3g053160 Medicago truncatula HOM05D007542 ORTHO05D009519 1.8e-07 60.1 62 53.2
ATR0772G056 Amborella trichopoda HOM05D007542 ORTHO05D009519 3.0e-07 59.3 64 45.3
Peaxi162Scf00235g00059 Petunia axillaris HOM05D007542 ORTHO05D009519 6.7e-07 58.2 134 35.1


User provided reference genes

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