Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 3.0e-56 221.5 102 100.0
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 1.8e-48 195.7 96 92.7
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 2.3e-24 115.5 107 57.9
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 3.0e-24 115.2 107 55.1
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 6.8e-24 114.0 107 55.1
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 6.8e-24 114.0 107 55.1
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 8.9e-24 113.6 109 54.1
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.0e-23 112.5 104 57.7
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 5.7e-23 110.9 108 50.0
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.3e-22 109.8 107 54.2
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 2.2e-22 109.0 107 53.3
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 2.2e-22 109.0 107 49.5
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 7.0e-21 104.0 107 47.7
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 2.0e-20 102.4 107 50.5
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 4.5e-20 101.3 107 47.7
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 5.9e-20 100.9 107 48.6
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 5.9e-20 100.9 107 48.6
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 7.8e-20 100.5 107 48.6
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 1.0e-19 100.1 107 47.7
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 1.0e-19 100.1 107 47.7
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.0e-19 100.1 107 46.7
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 1.7e-19 99.4 104 50.0
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 2.3e-19 99.0 107 44.9
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 2.3e-19 99.0 107 48.6
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 2.9e-19 98.6 107 46.7
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 8.6e-19 97.1 107 48.6
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 8.6e-19 97.1 107 44.9
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 1.9e-18 95.9 107 46.7
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 5.6e-18 94.4 107 47.7
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 5.6e-18 94.4 107 47.7
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 7.3e-18 94.0 108 45.4
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 9.5e-18 93.6 107 47.7
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 9.5e-18 93.6 107 43.9
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 9.5e-18 93.6 111 43.2
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 1.2e-17 93.2 105 49.5
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 2.8e-17 92.0 107 46.7
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 3.6e-17 91.7 104 44.2
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 6.1e-17 90.9 107 46.7
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 6.1e-17 90.9 109 45.0
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 8.0e-17 90.5 107 42.1
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 1.0e-16 90.1 107 44.9
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.4e-16 89.7 106 44.3
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 1.4e-16 89.7 108 46.3
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 1.8e-16 89.4 106 45.3
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.3e-16 89.0 107 45.8
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.0e-16 88.6 107 45.8
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 3.0e-16 88.6 109 46.8
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 3.0e-16 88.6 109 46.8
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 4.0e-16 88.2 104 46.2
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 4.0e-16 88.2 110 41.8
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 4.0e-16 88.2 107 44.9
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 5.2e-16 87.8 98 50.0
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 5.2e-16 87.8 109 45.9
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 6.8e-16 87.4 110 43.6
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 1.2e-15 86.7 107 44.9
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 3.4e-15 85.1 110 44.5
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 4.4e-15 84.7 110 41.8
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 4.4e-15 84.7 110 43.6
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 1.3e-14 83.2 110 44.5
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 1.3e-14 83.2 109 42.2
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 1.7e-14 82.8 110 44.5
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 1.7e-14 82.8 110 42.7
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 2.9e-14 82.0 104 44.2
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 2.9e-14 82.0 110 41.8
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 6.4e-14 80.9 114 44.7
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 6.4e-14 80.9 110 41.8
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 6.4e-14 80.9 109 41.3
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 6.4e-14 80.9 104 41.3
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 8.3e-14 80.5 108 41.7
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 1.1e-13 80.1 103 43.7
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 1.1e-13 80.1 112 42.0
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 1.1e-13 80.1 111 40.5
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 1.4e-13 79.7 100 44.0
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 1.8e-13 79.3 109 45.0
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 4.1e-13 78.2 99 45.5
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 4.1e-13 78.2 112 41.1
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 7.0e-13 77.4 104 43.3
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 9.2e-13 77.0 112 42.0
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 9.2e-13 77.0 102 42.2
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.2e-12 76.6 103 43.7
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 1.2e-12 76.6 103 43.7
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 3.5e-12 75.1 105 41.9
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 3.5e-12 75.1 105 41.9
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 3.5e-12 75.1 105 41.9
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 6.0e-12 74.3 109 38.5
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 6.0e-12 74.3 113 39.8
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 7.8e-12 73.9 105 40.0
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.0e-11 73.6 109 40.4
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 1.0e-11 73.6 105 41.9
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.0e-11 73.6 103 42.7
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 1.0e-11 73.6 110 40.0
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 2.3e-11 72.4 109 40.4
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 5.0e-11 71.2 101 41.6
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 6.6e-11 70.9 108 37.0
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 1.1e-10 70.1 112 37.5
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 1.5e-10 69.7 104 39.4
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 1.5e-10 69.7 103 40.8
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 2.5e-10 68.9 105 39.0
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 2.5e-10 68.9 105 39.0
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 3.3e-10 68.6 104 37.5
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 4.3e-10 68.2 109 39.4
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 4.3e-10 68.2 108 36.1
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 5.6e-10 67.8 106 37.7
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 5.6e-10 67.8 104 37.5
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 9.5e-10 67.0 111 36.9
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 4.7e-09 64.7 104 35.6
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 6.2e-09 64.3 91 39.6
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 9.8e-07 57.0 106 32.1


User provided reference genes

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