Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 4.0e-74 281.2 128 100.0
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 4.0e-74 281.2 128 100.0
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 2.9e-72 275.0 128 97.7
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 2.9e-72 275.0 128 97.7
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 3.1e-58 228.4 128 78.9
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 2.6e-57 225.3 128 77.3
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 6.7e-45 184.1 128 63.3
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 1.5e-44 183.0 128 62.5
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 2.2e-43 179.1 128 61.7
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 3.7e-43 178.3 128 60.9
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.1e-39 166.8 127 58.3
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.2e-38 163.3 128 56.2
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.0e-37 160.2 127 55.1
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 2.3e-37 159.1 128 53.1
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.3e-36 155.2 128 52.3
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 6.9e-34 147.5 128 51.6
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 9.1e-34 147.1 127 52.0
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 1.5e-33 146.4 127 51.2
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 1.5e-33 146.4 127 52.0
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 2.6e-33 145.6 107 58.9
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 4.5e-33 144.8 128 52.3
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 4.5e-33 144.8 128 52.3
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 1.3e-32 143.3 127 51.2
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 3.8e-32 141.7 95 65.3
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 1.4e-31 139.8 127 52.0
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 4.7e-30 134.8 128 47.7
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 6.1e-30 134.4 127 49.6
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 7.9e-30 134.0 128 49.2
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.8e-29 132.9 125 48.8
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 3.0e-29 132.1 124 49.2
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.9e-29 131.7 128 45.3
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.9e-29 131.7 124 46.8
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.8e-29 130.6 128 45.3
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.6e-28 129.0 128 46.9
DCAR_015955 Daucus carota HOM05D004865 ORTHO05D005949 7.4e-28 127.5 127 45.7
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 7.4e-28 127.5 122 45.9
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 9.7e-28 127.1 128 44.5
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 2.8e-27 125.6 128 49.2
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 4.8e-27 124.8 128 45.3
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 4.8e-27 124.8 128 45.3
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 8.2e-27 124.0 128 48.4
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 8.2e-27 124.0 129 43.4
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 8.2e-27 124.0 128 45.3
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 8.2e-27 124.0 108 55.6
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.8e-26 122.9 104 50.0
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.1e-26 122.1 115 46.1
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 5.3e-26 121.3 127 42.5
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 5.3e-26 121.3 101 49.5
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.0e-26 120.9 128 45.3
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 9.1e-26 120.6 120 51.7
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 1.5e-25 119.8 131 48.1
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.6e-25 119.0 128 44.5
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 7.7e-25 117.5 127 44.9
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.9e-24 115.5 128 43.8
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 2.9e-24 115.5 117 42.7
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 3.8e-24 115.2 127 44.9
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.8e-24 115.2 104 47.1
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 6.5e-24 114.4 128 40.6
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 1.1e-23 113.6 128 44.5
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 1.1e-23 113.6 128 44.5
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.5e-23 113.2 126 42.1
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.9e-23 112.8 130 43.1
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 2.5e-23 112.5 127 44.1
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.2e-23 110.9 128 45.3
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 9.4e-23 110.5 117 41.0
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 9.4e-23 110.5 117 40.2
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.2e-22 110.2 109 45.9
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 1.2e-22 110.2 123 42.3
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 1.2e-22 110.2 128 42.2
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 1.2e-22 110.2 128 42.2
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 1.2e-22 110.2 128 42.2
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.1e-22 109.4 128 45.3
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.7e-22 109.0 128 43.8
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 3.6e-22 108.6 132 41.7
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 3.6e-22 108.6 132 41.7
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.7e-22 108.2 128 43.8
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.1e-22 107.8 126 42.9
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 1.8e-21 106.3 115 45.2
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.8e-21 106.3 133 40.6
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 1.8e-21 106.3 104 50.0
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.3e-21 105.9 126 40.5
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.7e-21 104.4 127 42.5
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 1.1e-20 103.6 127 39.4
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-20 103.6 127 43.3
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.6e-20 102.4 128 43.0
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 4.4e-20 101.7 127 44.9
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 7.4e-20 100.9 127 37.0
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 7.4e-20 100.9 124 41.1
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.7e-19 98.6 126 42.1
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.7e-19 98.6 127 41.7
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.8e-19 98.2 126 41.3
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 6.3e-19 97.8 116 37.9
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.2e-19 97.4 126 41.3
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 8.2e-19 97.4 128 37.5
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 1.1e-18 97.1 110 45.5
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 1.4e-18 96.7 67 55.2
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 1.8e-18 96.3 128 35.9
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.1e-18 94.0 126 38.1
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.6e-17 93.2 128 39.1
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.6e-17 92.4 128 41.4
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.5e-17 91.7 127 40.9
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 4.5e-17 91.7 110 42.7
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.7e-17 90.9 128 39.8
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 3.8e-16 88.6 88 46.6
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 3.8e-16 88.6 118 39.0
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 3.8e-16 88.6 118 39.0
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.5e-16 87.8 96 38.5
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.5e-15 86.7 116 38.8
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.5e-15 86.7 117 37.6
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.9e-15 86.3 131 41.2
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.5e-15 85.9 130 40.8
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.5e-15 85.9 79 50.6
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 9.4e-15 84.0 135 40.7
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 9.4e-15 84.0 117 39.3
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 9.4e-15 84.0 130 36.2
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.4e-15 84.0 94 45.7
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.1e-14 82.8 129 41.9
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.6e-14 82.0 76 44.7
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 3.0e-13 79.0 104 37.5
Sed0006015 Sechium edule HOM05D004865 ORTHO05D034719 4.0e-13 78.6 124 37.1
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 8.8e-13 77.4 124 37.1
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.8e-13 77.4 78 47.4
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.4e-12 75.5 119 37.0
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 4.4e-12 75.1 114 36.8
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 2.2e-11 72.8 119 35.3
HanXRQChr03g0085651 Helianthus annuus HOM05D004865 ORTHO05D005949 2.8e-11 72.4 125 37.6
HanXRQChr13g0416741 Helianthus annuus HOM05D004865 ORTHO05D005949 3.7e-11 72.0 125 36.8
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.3e-11 71.2 79 44.3
HanXRQChr13g0416751 Helianthus annuus HOM05D004865 ORTHO05D005949 1.1e-10 70.5 124 35.5
HanXRQChr13g0416771 Helianthus annuus HOM05D004865 ORTHO05D005949 1.1e-10 70.5 124 35.5
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 1.8e-10 69.7 119 37.8
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 3.1e-10 68.9 84 38.1
CSS0013136 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 5.4e-10 68.2 82 43.9
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 2.0e-09 66.2 116 37.1
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 2.0e-09 66.2 116 37.1
EL10Ac3g05478 Beta vulgaris HOM05D009434 ORTHO05D011504 3.5e-09 65.5 80 46.2
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 4.5e-09 65.1 133 36.8
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.7e-09 64.3 129 30.2
ECA233G5781 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.9e-08 62.4 70 42.9
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.5e-08 61.2 96 36.5
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 3.2e-07 58.9 132 34.8
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 5.5e-07 58.2 97 34.0
Sc24g0002640 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.5e-07 58.2 81 42.0
HanXRQChr03g0085641 Helianthus annuus HOM05D004865 ORTHO05D005949 1.6e-06 56.6 71 43.7
AUR62001167 Chenopodium quinoa HOM05D009434 ORTHO05D011504 3.6e-06 55.5 73 39.7


User provided reference genes

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