Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P490T32 Lonicera japonica HOM05D000071 ORTHO05D029986 2.6e-53 212.2 144 100.0
Lj1C490T0 Lonicera japonica HOM05D000071 ORTHO05D000029 8.6e-49 197.2 122 100.0
Lj1P507T7 Lonicera japonica HOM05D000071 ORTHO05D000029 6.2e-31 137.9 123 65.9
Lj1A496T19 Lonicera japonica HOM05D000071 ORTHO05D000029 4.0e-30 135.2 121 66.1
Lj1A509T30 Lonicera japonica HOM05D000071 ORTHO05D000029 2.0e-29 132.9 121 65.3
Lju4617C0T0 Lonicera japonica HOM05D000071 ORTHO05D000029 8.4e-28 127.5 139 51.8
Lj1P489T12 Lonicera japonica HOM05D000071 ORTHO05D029986 3.3e-24 115.5 111 74.8
Lj1C509G3 Lonicera japonica HOM05D000071 ORTHO05D000029 1.4e-22 110.2 97 59.8
Lj1A509T32 Lonicera japonica HOM05D000071 ORTHO05D000029 7.8e-18 94.4 73 64.4
CSS0021909 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 5.1e-17 91.7 111 45.0
QL03p053878 Quercus lobata HOM05D000071 ORTHO05D000029 4.3e-16 88.6 115 41.7
QL03p053807 Quercus lobata HOM05D000071 ORTHO05D000029 1.3e-15 87.0 115 40.9
Dinv05738 Davidia involucrata HOM05D000071 ORTHO05D000029 1.8e-14 83.2 90 50.0
Lj1A504T19 Lonicera japonica HOM05D000071 ORTHO05D000029 2.4e-14 82.8 47 83.0
Lj1A487G35 Lonicera japonica HOM05D000071 ORTHO05D000029 9.0e-14 80.9 70 62.9
Lj7A274G16 Lonicera japonica HOM05D000071 ORTHO05D000029 9.0e-14 80.9 93 47.3
Prupe.4G116800 Prunus persica HOM05D000071 ORTHO05D000029 3.4e-13 79.0 122 36.1
PGSC0003DMG400018994 Solanum tuberosum HOM05D000071 ORTHO05D000029 5.8e-13 78.2 130 36.9
CAN.G1034.17 Capsicum annuum HOM05D000071 ORTHO05D000029 7.6e-13 77.8 129 42.6
Lj1P484T3 Lonicera japonica HOM05D000071 ORTHO05D029986 2.2e-12 76.3 84 59.5
CANSAT64G2047 Cannabis sativa HOM05D000071 ORTHO05D000029 4.9e-12 75.1 108 39.8
Prupe.1G100100 Prunus persica HOM05D000071 ORTHO05D000029 6.4e-12 74.7 122 34.4
Prupe.7G032900 Prunus persica HOM05D000071 ORTHO05D000029 8.4e-12 74.3 105 44.8
RcHm_v2.0_Chr2g0175321 Rosa chinensis HOM05D000071 ORTHO05D000029 1.4e-11 73.6 109 44.0
Dinv02377 Davidia involucrata HOM05D000071 ORTHO05D000029 1.9e-11 73.2 114 39.5
RcHm_v2.0_Chr2g0143061 Rosa chinensis HOM05D000071 ORTHO05D000029 2.4e-11 72.8 109 43.1
FvH4_6g53230 Fragaria vesca HOM05D000071 ORTHO05D000029 3.2e-11 72.4 109 39.4
Manes.09G007400 Manihot esculenta HOM05D000071 ORTHO05D000029 9.3e-11 70.9 118 39.8
Ah.15g095130 Amaranthus hybridus HOM05D000071 ORTHO05D000029 1.2e-10 70.5 117 35.0
Cc04_g07960 Coffea canephora HOM05D000071 ORTHO05D000029 1.2e-10 70.5 113 47.8
COL.COLO4_20366 Corchorus olitorius HOM05D000071 ORTHO05D000029 1.2e-10 70.5 119 35.3
Manes.03G071700 Manihot esculenta HOM05D000071 ORTHO05D000029 1.6e-10 70.1 113 40.7
Hma1.2p1_0609F.1_g188370 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 2.7e-10 69.3 114 36.0
Prupe.7G032500 Prunus persica HOM05D000071 ORTHO05D000029 2.7e-10 69.3 110 35.5
Migut.K01457 Erythranthe guttata HOM05D000071 ORTHO05D000029 3.5e-10 68.9 116 32.8
FvH4_3g13435 Fragaria vesca HOM05D000071 ORTHO05D000029 6.0e-10 68.2 102 40.2
MD05G1246400 Malus domestica HOM05D000071 ORTHO05D000029 6.0e-10 68.2 114 49.1
MD05G1246500 Malus domestica HOM05D000071 ORTHO05D000029 6.0e-10 68.2 114 49.1
Prupe.7G033000 Prunus persica HOM05D000071 ORTHO05D000029 7.9e-10 67.8 109 44.0
Prupe.3G304400 Prunus persica HOM05D000071 ORTHO05D000029 1.0e-09 67.4 109 36.7
Glyma.15G088400 Glycine max HOM05D000071 ORTHO05D000029 1.3e-09 67.0 99 35.4
QL05p008200 Quercus lobata HOM05D000071 ORTHO05D000029 1.3e-09 67.0 99 40.4
BcaC02g11577 Brassica carinata HOM05D000071 ORTHO05D000029 1.8e-09 66.6 116 34.5
C04p13830 Brassica napus HOM05D000071 ORTHO05D000029 1.8e-09 66.6 116 34.5
Dinv00308 Davidia involucrata HOM05D000071 ORTHO05D000029 1.8e-09 66.6 114 37.7
FAN25G2411 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.8e-09 66.6 101 39.6
Thecc.02G277200 Theobroma cacao HOM05D000071 ORTHO05D000029 1.8e-09 66.6 115 35.7
AL4G30950 Arabidopsis lyrata HOM05D000071 ORTHO05D000029 2.3e-09 66.2 114 35.1
BolC4t22973H Brassica oleracea HOM05D000071 ORTHO05D000029 3.0e-09 65.9 116 34.5
BraA05t20018Z Brassica rapa HOM05D000071 ORTHO05D000029 3.0e-09 65.9 116 40.5
COL.COLO4_27607 Corchorus olitorius HOM05D000071 ORTHO05D000029 3.0e-09 65.9 111 36.9
Hma1.2p1_0088F.1_g045200 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 3.0e-09 65.9 116 35.3
Hma1.2p1_1278F.1_g272380 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 3.0e-09 65.9 112 33.0
Lj7P384T2 Lonicera japonica HOM05D000071 ORTHO05D029986 3.0e-09 65.9 73 49.3
MD12G1020100 Malus domestica HOM05D000071 ORTHO05D000029 3.9e-09 65.5 114 38.6
Thecc.02G002400 Theobroma cacao HOM05D000071 ORTHO05D000029 3.9e-09 65.5 112 37.5
MD05G1248100 Malus domestica HOM05D000071 ORTHO05D000029 5.1e-09 65.1 117 34.2
Atru.chr10.262 Acer truncatum HOM05D000071 ORTHO05D000029 6.7e-09 64.7 116 36.2
A05p10740 Brassica napus HOM05D000071 ORTHO05D000029 6.7e-09 64.7 116 45.7
Actinidia33174 Actinidia chinensis HOM05D000071 ORTHO05D000029 8.7e-09 64.3 113 35.4
Gohir.A12G050300 Gossypium hirsutum HOM05D000071 ORTHO05D000029 8.7e-09 64.3 116 34.5
Sp4g17230 Schrenkiella parvula HOM05D000071 ORTHO05D000029 8.7e-09 64.3 112 42.0
BcaB02g09495 Brassica carinata HOM05D000071 ORTHO05D000029 1.1e-08 63.9 116 38.8
Nitab4.5_0003156g0060 Nicotiana tabacum HOM05D000071 ORTHO05D000029 1.1e-08 63.9 112 41.1
RcHm_v2.0_Chr2g0143091 Rosa chinensis HOM05D000071 ORTHO05D000029 1.1e-08 63.9 110 51.8
CARHR129100 Cardamine hirsuta HOM05D000071 ORTHO05D000029 1.5e-08 63.5 114 40.4
Gohir.D12G048600 Gossypium hirsutum HOM05D000071 ORTHO05D000029 1.5e-08 63.5 116 34.5
Gorai.008G051600 Gossypium raimondii HOM05D000071 ORTHO05D000029 1.5e-08 63.5 116 34.5
RcHm_v2.0_Chr5g0015191 Rosa chinensis HOM05D000071 ORTHO05D000029 1.5e-08 63.5 91 40.7
Solyc01g099250.3 Solanum lycopersicum HOM05D000071 ORTHO05D000029 1.5e-08 63.5 100 45.0
Prupe.4G116900 Prunus persica HOM05D000071 ORTHO05D000029 1.9e-08 63.2 106 35.8
QL03p053955 Quercus lobata HOM05D000071 ORTHO05D000029 2.5e-08 62.8 102 37.3
QL03p054080 Quercus lobata HOM05D000071 ORTHO05D000029 2.5e-08 62.8 87 43.7
Hma1.2p1_0747F.1_g212480 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 3.3e-08 62.4 114 42.1
MD05G1245800 Malus domestica HOM05D000071 ORTHO05D000029 3.3e-08 62.4 115 36.5
arahy.Tifrunner.gnm1.ann1.61Q21E Arachis hypogaea HOM05D000071 ORTHO05D000029 4.3e-08 62.0 117 38.5
MD10G1222200 Malus domestica HOM05D000071 ORTHO05D000029 4.3e-08 62.0 116 40.5
FAN11G2845 Fragaria x ananassa HOM05D000071 ORTHO05D000029 5.6e-08 61.6 96 40.6
Thecc.06G139000 Theobroma cacao HOM05D000071 ORTHO05D000029 5.6e-08 61.6 93 47.3
COL.COLO4_30958 Corchorus olitorius HOM05D000071 ORTHO05D000029 7.4e-08 61.2 90 40.0
Thhalv10016209m.g Eutrema salsugineum HOM05D000071 ORTHO05D000029 7.4e-08 61.2 114 32.5
MD17G1013200 Malus domestica HOM05D000071 ORTHO05D000029 7.4e-08 61.2 108 34.3
CAN.G1034.27 Capsicum annuum HOM05D000071 ORTHO05D000029 9.6e-08 60.8 114 39.5
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 9.6e-08 60.8 109 43.1
Manes.04G014301 Manihot esculenta HOM05D000071 ORTHO05D000029 9.6e-08 60.8 72 44.4
Thecc.02G277500 Theobroma cacao HOM05D000071 ORTHO05D000029 9.6e-08 60.8 101 41.6
GSVIVG01001802001 Vitis vinifera HOM05D000071 ORTHO05D000029 9.6e-08 60.8 105 41.0
CAN.G803.1 Capsicum annuum HOM05D000071 ORTHO05D000029 1.3e-07 60.5 109 33.0
RcHm_v2.0_Chr1g0354411 Rosa chinensis HOM05D000071 ORTHO05D000029 1.3e-07 60.5 77 45.5
RcHm_v2.0_Chr2g0143001 Rosa chinensis HOM05D000071 ORTHO05D000029 1.3e-07 60.5 91 39.6
TAR266G0003 Trochodendron aralioides HOM05D000071 ORTHO05D000029 1.3e-07 60.5 100 37.0
VMungo0720G1611 Vigna mungo HOM05D000071 ORTHO05D000029 1.3e-07 60.5 75 42.7
Hma1.2p1_1011F.1_g247590 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 1.6e-07 60.1 121 35.5
TAR636G0907 Trochodendron aralioides HOM05D000071 ORTHO05D000029 1.6e-07 60.1 100 36.0
Prupe.4G122800 Prunus persica HOM05D000071 ORTHO05D000029 2.1e-07 59.7 108 33.3
Prupe.7G040200 Prunus persica HOM05D000071 ORTHO05D000029 2.1e-07 59.7 94 36.2
PGSC0003DMG400017337 Solanum tuberosum HOM05D000071 ORTHO05D000029 2.1e-07 59.7 109 33.0
Atru.chr6.2540 Acer truncatum HOM05D000071 ORTHO05D000029 2.8e-07 59.3 102 32.4
Dinv05862 Davidia involucrata HOM05D000071 ORTHO05D000029 2.8e-07 59.3 101 38.6
Dinv25664 Davidia involucrata HOM05D000071 ORTHO05D000029 2.8e-07 59.3 91 35.2
MD17G1013300 Malus domestica HOM05D000071 ORTHO05D000029 2.8e-07 59.3 109 31.2
QL93p0310_0029 Quercus lobata HOM05D000071 ORTHO05D000029 2.8e-07 59.3 88 39.8
CSS0025857 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 3.7e-07 58.9 95 38.9
FAN11G2146 Fragaria x ananassa HOM05D000710 ORTHO05D000336 3.7e-07 58.9 76 57.9
MD05G1225100 Malus domestica HOM05D000071 ORTHO05D000029 3.7e-07 58.9 115 37.4
MD05G1225400 Malus domestica HOM05D000071 ORTHO05D000029 3.7e-07 58.9 115 37.4
Peaxi162Scf00475g00011 Petunia axillaris HOM05D000071 ORTHO05D000029 3.7e-07 58.9 92 38.0
TPR.G4462 Trifolium pratense HOM05D000071 ORTHO05D000029 6.2e-07 58.2 99 33.3
Atru.chr6.2544 Acer truncatum HOM05D000071 ORTHO05D000029 8.1e-07 57.8 105 34.3
Cfa015747 Carpinus fangiana HOM05D000071 ORTHO05D003330 8.1e-07 57.8 115 34.8
Cpa.g.sc42.60 Carica papaya HOM05D000071 ORTHO05D000029 1.1e-06 57.4 71 63.4
Cc07_g16440 Coffea canephora HOM05D000071 ORTHO05D000029 1.1e-06 57.4 112 33.9
Eucgr.J02326 Eucalyptus grandis HOM05D000071 ORTHO05D000029 1.1e-06 57.4 92 38.0
Prupe.4G123200 Prunus persica HOM05D000071 ORTHO05D000029 1.1e-06 57.4 101 36.6
AL4G11600 Arabidopsis lyrata HOM05D000071 ORTHO05D000029 1.4e-06 57.0 107 41.1
arahy.Tifrunner.gnm1.ann1.UY3KLE Arachis hypogaea HOM05D000071 ORTHO05D000029 1.4e-06 57.0 77 40.3
FAN02G4221 Fragaria x ananassa HOM05D000071 ORTHO05D000029 1.4e-06 57.0 109 41.3
Hma1.2p1_1011F.1_g247580 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 1.4e-06 57.0 109 41.3
MD05G1224700 Malus domestica HOM05D000071 ORTHO05D000029 1.4e-06 57.0 78 41.0
PGR083G2557 Punica granatum HOM05D000071 ORTHO05D000029 1.4e-06 57.0 90 35.6
RcHm_v2.0_Chr1g0353911 Rosa chinensis HOM05D000071 ORTHO05D000029 1.4e-06 57.0 90 35.6
CSS0033806 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 1.8e-06 56.6 109 38.5
Eucgr.L01193 Eucalyptus grandis HOM05D000071 ORTHO05D000029 1.8e-06 56.6 92 37.0
Hma1.2p1_1220F.1_g268020 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 1.8e-06 56.6 94 38.3
Oeu049764.4 Olea europaea HOM05D000071 ORTHO05D000029 1.8e-06 56.6 80 38.8
Peaxi162Scf00037g00067 Petunia axillaris HOM05D000071 ORTHO05D000029 1.8e-06 56.6 129 36.4
Prupe.4G117000 Prunus persica HOM05D000071 ORTHO05D000029 1.8e-06 56.6 114 37.7
Prupe.7G033100 Prunus persica HOM05D000071 ORTHO05D000029 1.8e-06 56.6 97 36.1
Ciclev10029913m.g Citrus clementina HOM05D000071 ORTHO05D000029 2.4e-06 56.2 102 40.2
Dinv10971 Davidia involucrata HOM05D000071 ORTHO05D000029 2.4e-06 56.2 43 62.8
Phvul.007G135201 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 2.4e-06 56.2 73 41.1
CiPaw.10G089100 Carya illinoinensis HOM05D000071 ORTHO05D000029 3.1e-06 55.8 125 35.2
COL.COLO4_20361 Corchorus olitorius HOM05D000071 ORTHO05D000029 3.1e-06 55.8 75 42.7
MD17G1013400 Malus domestica HOM05D000071 ORTHO05D000029 3.1e-06 55.8 91 35.2
Oeu013643.1 Olea europaea HOM05D000071 ORTHO05D000029 3.1e-06 55.8 80 43.8
QL04p093590 Quercus lobata HOM05D000071 ORTHO05D000029 3.1e-06 55.8 88 38.6
RcHm_v2.0_Chr2g0142981 Rosa chinensis HOM05D000071 ORTHO05D000029 3.1e-06 55.8 110 50.0
COL.COLO4_20700 Corchorus olitorius HOM05D000071 ORTHO05D000029 4.0e-06 55.5 107 34.6
Haze_05228 Corylus avellana HOM05D000071 ORTHO05D000029 4.0e-06 55.5 97 35.1
FAN21G3558 Fragaria x ananassa HOM05D000071 ORTHO05D000029 4.0e-06 55.5 74 56.8
MD10G1221900 Malus domestica HOM05D000071 ORTHO05D000029 4.0e-06 55.5 116 37.1
RcHm_v2.0_Chr1g0354451 Rosa chinensis HOM05D000071 ORTHO05D000029 4.0e-06 55.5 70 48.6
Haze_05211 Corylus avellana HOM05D000071 ORTHO05D000029 5.3e-06 55.1 99 34.3
Eucgr.L01192 Eucalyptus grandis HOM05D000071 ORTHO05D000029 5.3e-06 55.1 92 37.0
QL04p093548 Quercus lobata HOM05D000071 ORTHO05D000029 5.3e-06 55.1 88 46.6
RcHm_v2.0_Chr5g0069391 Rosa chinensis HOM05D000071 ORTHO05D000029 5.3e-06 55.1 115 29.6
CSS0009714 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 9.0e-06 54.3 73 57.5
CSS0042351 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 9.0e-06 54.3 92 53.3
Eucgr.J02330 Eucalyptus grandis HOM05D000071 ORTHO05D000029 9.0e-06 54.3 96 34.4
Manes.16G058200 Manihot esculenta HOM05D000071 ORTHO05D000029 9.0e-06 54.3 109 33.9
PGR102G2300 Punica granatum HOM05D000071 ORTHO05D000029 9.0e-06 54.3 93 35.5


User provided reference genes

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