Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P470T19 Lonicera japonica HOM05D003200 ORTHO05D003574 2.1e-32 141.7 72 100.0
Lj1P478T20 Lonicera japonica HOM05D003200 ORTHO05D003574 3.5e-27 124.4 64 100.0
Lsat_1_v5_gn_6_49141 Lactuca sativa HOM05D003200 ORTHO05D003574 2.2e-21 105.1 64 79.7
AL6G31430 Arabidopsis lyrata HOM05D003200 ORTHO05D003574 1.4e-20 102.4 69 76.8
Carub.0006s1827 Capsella rubella HOM05D003200 ORTHO05D003574 1.4e-20 102.4 69 76.8
Sp6g24480 Schrenkiella parvula HOM05D003200 ORTHO05D003574 1.9e-20 102.1 69 84.1
Thhalv10013350m.g Eutrema salsugineum HOM05D003200 ORTHO05D003574 2.5e-20 101.7 69 81.2
AT5G19900 Arabidopsis thaliana HOM05D003200 ORTHO05D003574 4.2e-20 100.9 69 75.4
Lj2P674T26 Lonicera japonica HOM05D003200 ORTHO05D003574 4.2e-20 100.9 69 79.7
CARHR192960 Cardamine hirsuta HOM05D003200 ORTHO05D003574 7.1e-20 100.1 69 75.4
BolC3t13598H Brassica oleracea HOM05D003200 ORTHO05D003574 9.3e-20 99.8 65 86.2
HanXRQChr11g0345461 Helianthus annuus HOM05D003200 ORTHO05D003574 9.3e-20 99.8 69 71.0
QL01p009941 Quercus lobata HOM05D003200 ORTHO05D003574 9.3e-20 99.8 69 75.4
Glyma.10G294900 Glycine max HOM05D003200 ORTHO05D003574 1.2e-19 99.4 69 79.7
THA.LOC104811052 Tarenaya hassleriana HOM05D003200 ORTHO05D003574 1.2e-19 99.4 69 75.4
Actinidia06303 Actinidia chinensis HOM05D003200 ORTHO05D003574 1.6e-19 99.0 69 78.3
A10p19820 Brassica napus HOM05D003200 ORTHO05D003574 1.6e-19 99.0 69 73.9
BraA10t44058Z Brassica rapa HOM05D003200 ORTHO05D003574 1.6e-19 99.0 69 73.9
CSS0033476 Camellia sinensis var. sinensis HOM05D003200 ORTHO05D003574 2.1e-19 98.6 69 78.3
THA.LOC104799746 Tarenaya hassleriana HOM05D003200 ORTHO05D003574 2.7e-19 98.2 70 74.3
BcaB08g36558 Brassica carinata HOM05D003200 ORTHO05D003574 3.5e-19 97.8 69 72.5
BcaC04g19396 Brassica carinata HOM05D003200 ORTHO05D003574 3.5e-19 97.8 69 72.5
C09p56140 Brassica napus HOM05D003200 ORTHO05D003574 3.5e-19 97.8 69 72.5
BolC9t58481H Brassica oleracea HOM05D003200 ORTHO05D003574 3.5e-19 97.8 69 72.5
Psat6g241840 Pisum sativum HOM05D003200 ORTHO05D003574 4.6e-19 97.4 64 75.0
FvH4_3g44330 Fragaria vesca HOM05D003200 ORTHO05D003574 7.9e-19 96.7 64 82.8
FAN11G2071 Fragaria x ananassa HOM05D003200 ORTHO05D003574 7.9e-19 96.7 64 82.8
FAN16G1057 Fragaria x ananassa HOM05D003200 ORTHO05D003574 7.9e-19 96.7 64 82.8
FAN21G1034 Fragaria x ananassa HOM05D003200 ORTHO05D003574 7.9e-19 96.7 64 82.8
FAN25G2592 Fragaria x ananassa HOM05D003200 ORTHO05D003574 7.9e-19 96.7 64 82.8
Potri.003G214300 Populus trichocarpa HOM05D003200 ORTHO05D003574 7.9e-19 96.7 69 82.6
RcHm_v2.0_Chr5g0080701 Rosa chinensis HOM05D003200 ORTHO05D003574 7.9e-19 96.7 64 82.8
Glyma.20G244700 Glycine max HOM05D003200 ORTHO05D003574 1.0e-18 96.3 69 78.3
Phvul.007G005200 Phaseolus vulgaris HOM05D003200 ORTHO05D003574 2.3e-18 95.1 69 76.8
VMungo0720G1305 Vigna mungo HOM05D003200 ORTHO05D003574 2.3e-18 95.1 69 76.8
A03p09700 Brassica napus HOM05D003200 ORTHO05D003574 3.0e-18 94.7 65 83.1
BraA03t10286Z Brassica rapa HOM05D003200 ORTHO05D003574 3.0e-18 94.7 65 83.1
Nitab4.5_0001512g0020 Nicotiana tabacum HOM05D003200 ORTHO05D003574 3.9e-18 94.4 69 78.3
Nitab4.5_0003671g0060 Nicotiana tabacum HOM05D003200 ORTHO05D003574 3.9e-18 94.4 69 78.3
PGSC0003DMG400024057 Solanum tuberosum HOM05D003200 ORTHO05D003574 3.9e-18 94.4 69 78.3
Cfa009640 Carpinus fangiana HOM05D003200 ORTHO05D003574 6.7e-18 93.6 66 80.3
MD03G1014800 Malus domestica HOM05D003200 ORTHO05D003574 1.5e-17 92.4 64 81.2
MD11G1016000 Malus domestica HOM05D003200 ORTHO05D003574 1.5e-17 92.4 64 81.2
Sopen01g010160 Solanum pennellii HOM05D003200 ORTHO05D003574 1.5e-17 92.4 69 76.8
MSTRG.18395 Avicennia marina HOM05D003200 ORTHO05D003574 1.9e-17 92.0 71 73.2
Dinv36326 Davidia involucrata HOM05D003200 ORTHO05D003574 1.9e-17 92.0 69 72.5
Prupe.6G014100 Prunus persica HOM05D003200 ORTHO05D003574 1.9e-17 92.0 65 81.5
BcaB01g04823 Brassica carinata HOM05D003200 ORTHO05D003574 2.5e-17 91.7 66 80.3
CAN.G511.12 Capsicum annuum HOM05D003200 ORTHO05D003574 2.5e-17 91.7 69 76.8
CiPaw.13G170600 Carya illinoinensis HOM05D003200 ORTHO05D003574 2.5e-17 91.7 67 77.6
DCAR_001996 Daucus carota HOM05D003200 ORTHO05D003574 4.3e-17 90.9 67 82.1
Nitab4.5_0003436g0110 Nicotiana tabacum HOM05D003200 ORTHO05D003574 4.3e-17 90.9 70 77.1
Aa31LG1G13220 Aethionema arabicum HOM05D003200 ORTHO05D003574 5.7e-17 90.5 71 74.6
A02p05900 Brassica napus HOM05D003200 ORTHO05D003574 5.7e-17 90.5 64 73.4
BraA02t05542Z Brassica rapa HOM05D003200 ORTHO05D003574 5.7e-17 90.5 64 73.4
Lsat_1_v5_gn_1_68481 Lactuca sativa HOM05D003200 ORTHO05D003574 7.4e-17 90.1 69 68.1
Ah.06g193140 Amaranthus hybridus HOM05D003200 ORTHO05D003574 9.7e-17 89.7 69 71.0
C03p11280 Brassica napus HOM05D003200 ORTHO05D003574 9.7e-17 89.7 66 78.8
TAR369G0274 Trochodendron aralioides HOM05D003200 ORTHO05D003574 9.7e-17 89.7 67 68.7
Sc09g0000340 Simmondsia chinensis HOM05D003200 ORTHO05D003574 1.3e-16 89.4 69 73.9
TWI32G0311 Tripterygium wilfordii HOM05D003200 ORTHO05D003574 1.3e-16 89.4 66 80.3
EL10Ac4g10333 Beta vulgaris HOM05D003200 ORTHO05D003574 1.6e-16 89.0 69 71.0
Migut.D00540 Erythranthe guttata HOM05D003200 ORTHO05D003574 1.6e-16 89.0 73 74.0
Gohir.D08G088300 Gossypium hirsutum HOM05D003200 ORTHO05D003574 1.6e-16 89.0 70 71.4
Gorai.004G092700 Gossypium raimondii HOM05D003200 ORTHO05D003574 1.6e-16 89.0 70 71.4
Oeu058542.1 Olea europaea HOM05D003200 ORTHO05D003574 2.2e-16 88.6 73 72.6
SalBow2G1492 Salvia bowleyana HOM05D003200 ORTHO05D003574 2.2e-16 88.6 67 70.1
SalBow2G2949 Salvia bowleyana HOM05D003200 ORTHO05D003574 2.2e-16 88.6 67 70.1
CiPaw.14G129600 Carya illinoinensis HOM05D003200 ORTHO05D003574 2.8e-16 88.2 68 75.0
Cc01_g03340 Coffea canephora HOM05D003200 ORTHO05D003574 2.8e-16 88.2 72 75.0
Hund21653 Selenicereus undatus HOM05D003200 ORTHO05D003574 2.8e-16 88.2 69 69.6
Lalb_Chr06g0164391 Lupinus albus HOM05D003200 ORTHO05D003574 3.7e-16 87.8 67 79.1
MBI06_g07796_MAGBIO Magnolia biondii HOM05D003200 ORTHO05D003574 3.7e-16 87.8 67 67.2
BolC2t06994H Brassica oleracea HOM05D003200 ORTHO05D003574 4.8e-16 87.4 64 79.7
Rhsim13G0227400 Rhododendron simsii HOM05D003200 ORTHO05D003574 4.8e-16 87.4 66 72.7
Peaxi162Scf00780g00043 Petunia axillaris HOM05D003200 ORTHO05D003574 6.3e-16 87.0 65 76.9
Sc16g0011990 Simmondsia chinensis HOM05D003200 ORTHO05D003574 6.3e-16 87.0 69 71.0
Lj5g0003842 Lotus japonicus HOM05D003200 ORTHO05D003574 8.2e-16 86.7 69 68.1
ECA233G5951 Erigeron canadensis HOM05D003200 ORTHO05D003574 1.1e-15 86.3 60 81.7
Oeu043308.3 Olea europaea HOM05D003200 ORTHO05D003574 1.1e-15 86.3 73 65.8
PSO339G4963 Papaver somniferum HOM05D003200 ORTHO05D003574 1.1e-15 86.3 72 65.3
Duzib170G0875 Durio zibethinus HOM05D003200 ORTHO05D003574 1.4e-15 85.9 70 70.0
TWI60G0814 Tripterygium wilfordii HOM05D003200 ORTHO05D003574 1.4e-15 85.9 66 78.8
Manes.03G089900 Manihot esculenta HOM05D003200 ORTHO05D003574 1.8e-15 85.5 71 69.0
Manes.15G103800 Manihot esculenta HOM05D003200 ORTHO05D003574 1.8e-15 85.5 71 70.4
BNapus_Darmor_BZH_scaffold_38p01970 Brassica napus HOM05D003200 ORTHO05D003574 2.4e-15 85.1 65 76.9
Ca_11388_v3 Cicer arietinum L. HOM05D003200 ORTHO05D003574 2.4e-15 85.1 65 76.9
Gohir.A08G078400 Gossypium hirsutum HOM05D003200 ORTHO05D003574 2.4e-15 85.1 70 67.1
MSTRG.17558 Avicennia marina HOM05D003200 ORTHO05D003574 3.1e-15 84.7 71 67.6
Nitab4.5_0005041g0060 Nicotiana tabacum HOM05D003200 ORTHO05D003574 3.1e-15 84.7 70 72.9
Medtr1g116330 Medicago truncatula HOM05D003200 ORTHO05D003574 5.3e-15 84.0 65 75.4
SalBow2G0964 Salvia bowleyana HOM05D003200 ORTHO05D003574 5.3e-15 84.0 65 72.3
TAR623G0555 Trochodendron aralioides HOM05D003200 ORTHO05D003574 6.9e-15 83.6 64 70.3
Actinidia06863 Actinidia chinensis HOM05D003200 ORTHO05D003574 1.2e-14 82.8 69 72.5
Ciclev10015088m.g Citrus clementina HOM05D003200 ORTHO05D003574 1.2e-14 82.8 70 75.7
Potri.001G011800 Populus trichocarpa HOM05D003200 ORTHO05D003574 1.2e-14 82.8 74 67.6
Thecc.09G216900 Theobroma cacao HOM05D003200 ORTHO05D003574 1.2e-14 82.8 70 71.4
unitig_0.g182 Utricularia gibba HOM05D003200 ORTHO05D003574 1.2e-14 82.8 68 66.2
Dinv43936 Davidia involucrata HOM05D003200 ORTHO05D003574 1.5e-14 82.4 66 72.7
SalBow7G0874 Salvia bowleyana HOM05D003200 ORTHO05D003574 2.0e-14 82.0 68 70.6
SalBow7G4053 Salvia bowleyana HOM05D003200 ORTHO05D003574 2.0e-14 82.0 68 70.6
Aqoxy1G00122 Aquilegia oxysepala HOM05D003200 ORTHO05D003574 2.6e-14 81.6 69 69.6
Duzib150G1584 Durio zibethinus HOM05D003200 ORTHO05D003574 2.6e-14 81.6 70 72.9
TPR.G10419 Trifolium pratense HOM05D003200 ORTHO05D003574 2.6e-14 81.6 67 74.6
TWI34G0579 Tripterygium wilfordii HOM05D003200 ORTHO05D003574 4.5e-14 80.9 66 74.2
HanXRQChr02g0056651 Helianthus annuus HOM05D003200 ORTHO05D003574 5.9e-14 80.5 72 62.5
Lalb_Chr02g0144231 Lupinus albus HOM05D003200 ORTHO05D003574 7.7e-14 80.1 71 70.4
unitig_60.g25721 Utricularia gibba HOM05D003200 ORTHO05D003574 1.3e-13 79.3 68 64.7
SGA_v2.0_scaffold1G00760 Striga asiatica HOM05D003200 ORTHO05D003574 1.7e-13 79.0 73 69.9
CDE04G0125 Ceratophyllum demersum HOM05D003200 ORTHO05D003574 2.2e-13 78.6 66 65.2
Hma1.2p1_0505F.1_g168170 Hydrangea macrophylla HOM05D003200 ORTHO05D003574 2.2e-13 78.6 67 68.7
Sed0003084 Sechium edule HOM05D003200 ORTHO05D003574 2.2e-13 78.6 70 64.3
Gohir.A05G066600 Gossypium hirsutum HOM05D003200 ORTHO05D003574 3.8e-13 77.8 70 70.0
Gohir.D05G069100 Gossypium hirsutum HOM05D003200 ORTHO05D003574 3.8e-13 77.8 70 70.0
Gorai.009G070100 Gossypium raimondii HOM05D003200 ORTHO05D003574 3.8e-13 77.8 70 70.0
GSVIVG01025369001 Vitis vinifera HOM05D003200 ORTHO05D003574 1.1e-12 76.3 66 68.2
CDE02G1896 Ceratophyllum demersum HOM05D003200 ORTHO05D003574 1.4e-12 75.9 66 63.6
ATR0807G127 Amborella trichopoda HOM05D003200 ORTHO05D003574 1.9e-12 75.5 66 60.6
COL.COLO4_10428 Corchorus olitorius HOM05D003200 ORTHO05D003574 1.9e-12 75.5 70 67.1
Atru.chr3.2127 Acer truncatum HOM05D003200 ORTHO05D003574 2.5e-12 75.1 71 70.4
Atru.chr3.2140 Acer truncatum HOM05D003200 ORTHO05D003574 2.5e-12 75.1 71 70.4
ECA248G1666 Erigeron canadensis HOM05D003200 ORTHO05D003574 2.5e-12 75.1 74 62.2
Dinv43495 Davidia involucrata HOM05D003200 ORTHO05D003574 3.2e-12 74.7 65 69.2
TAR633G1334 Trochodendron aralioides HOM05D003200 ORTHO05D003574 3.2e-12 74.7 67 67.2
ClCG02G023720 Citrullus lanatus HOM05D003200 ORTHO05D003574 7.2e-12 73.6 70 70.0
MELO3C014649.2 Cucumis melo HOM05D003200 ORTHO05D003574 9.4e-12 73.2 70 70.0
CsaV3_4G023690 Cucumis sativus L. HOM05D003200 ORTHO05D003574 9.4e-12 73.2 70 70.0
Lj9P622T4 Lonicera japonica HOM05D003200 ORTHO05D003574 1.2e-11 72.8 66 65.2
Sed0009987 Sechium edule HOM05D003200 ORTHO05D003574 3.6e-11 71.2 64 62.5
TAR636G3550 Trochodendron aralioides HOM05D003200 ORTHO05D003574 7.9e-11 70.1 69 63.8
Rhsim01G0186500 Rhododendron simsii HOM05D003200 ORTHO05D003574 1.0e-10 69.7 74 63.5
Sabra01G0008800 Salix brachista HOM05D003200 ORTHO05D003574 1.0e-10 69.7 78 57.7
Os02g0832600 Oryza sativa ssp. japonica HOM05D003200 ORTHO05D003574 1.8e-10 68.9 55 65.5
ClCG09G003790 Citrullus lanatus HOM05D003200 ORTHO05D003574 3.9e-10 67.8 69 62.3
AUR62000043 Chenopodium quinoa HOM05D003200 ORTHO05D003574 6.7e-10 67.0 44 77.3
HPP92_005025 Vanilla planifolia HOM05D003200 ORTHO05D003574 6.7e-10 67.0 61 59.0
AUR62019213 Chenopodium quinoa HOM05D003200 ORTHO05D003574 8.8e-10 66.6 45 75.6
Zm00001eb190550 Zea mays HOM05D003200 ORTHO05D003574 8.8e-10 66.6 59 71.2
MELO3C014647.2 Cucumis melo HOM05D003200 ORTHO05D003574 1.1e-09 66.2 64 68.8
MELO3C023513.2 Cucumis melo HOM05D003200 ORTHO05D003574 3.3e-09 64.7 70 61.4
CsaV3_7G031440 Cucumis sativus L. HOM05D003200 ORTHO05D003574 3.3e-09 64.7 70 61.4
CsaV3_4G023710 Cucumis sativus L. HOM05D003200 ORTHO05D003574 4.3e-09 64.3 64 67.2
A03p28210 Brassica napus HOM05D003200 ORTHO05D003574 5.7e-09 63.9 71 53.5
BcaC01g04758 Brassica carinata HOM05D003200 ORTHO05D003574 7.4e-09 63.5 71 52.1
C03p34110 Brassica napus HOM05D003200 ORTHO05D003574 7.4e-09 63.5 71 52.1
Os09g0553700 Oryza sativa ssp. japonica HOM05D003200 ORTHO05D003574 1.3e-08 62.8 55 65.5
BolC3t15720H Brassica oleracea HOM05D003200 ORTHO05D003574 1.7e-08 62.4 71 50.7
Zm00001eb104430 Zea mays HOM05D003200 ORTHO05D003574 1.7e-08 62.4 48 66.7
HanXRQChr08g0216741 Helianthus annuus HOM05D003200 ORTHO05D003574 2.2e-08 62.0 48 70.8
BcaB01g02851 Brassica carinata HOM05D003200 ORTHO05D003574 2.8e-08 61.6 71 49.3
PGR102G1285 Punica granatum HOM05D003200 ORTHO05D003574 2.8e-08 61.6 75 60.0
SGA_v2.0_scaffold8G04634 Striga asiatica HOM05D003200 ORTHO05D003574 2.8e-08 61.6 73 58.9
Zm00001eb320760 Zea mays HOM05D003200 ORTHO05D003574 3.7e-08 61.2 48 66.7
DCAR_024992 Daucus carota HOM05D003200 ORTHO05D003574 6.3e-08 60.5 59 61.0
BraA03t12029Z Brassica rapa HOM05D003200 ORTHO05D003574 1.1e-07 59.7 70 51.4
Lsat_1_v5_gn_1_55981 Lactuca sativa HOM05D003200 ORTHO05D003574 3.1e-07 58.2 42 73.8
Ca_02880_v3 Cicer arietinum L. HOM05D003200 ORTHO05D003574 4.1e-07 57.8 66 53.0
Lalb_Chr21g0307561 Lupinus albus HOM05D003200 ORTHO05D003574 4.1e-07 57.8 64 54.7
Sp6g09070 Schrenkiella parvula HOM05D003200 ORTHO05D003574 4.1e-07 57.8 68 44.1
unitig_26.g10121 Utricularia gibba HOM05D003200 ORTHO05D003574 9.1e-07 56.6 73 50.7
SEGI_19228 Sequoiadendron giganteum HOM05D003200 ORTHO05D003574 2.6e-06 55.1 55 54.5
PGSC0003DMG400028980 Solanum tuberosum HOM05D003200 ORTHO05D003574 5.9e-06 53.9 59 59.3
Cpa.g.c36927 Carica papaya HOM05D003200 ORTHO05D003574 7.7e-06 53.5 45 75.6


User provided reference genes

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