Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 2.0e-33 145.2 74 100.0
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 9.9e-33 142.9 73 98.6
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 6.6e-29 130.2 73 90.4
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 6.6e-29 130.2 73 90.4
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 8.7e-29 129.8 73 90.4
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 2.5e-28 128.3 73 89.0
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 3.3e-28 127.9 73 89.0
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 3.3e-28 127.9 73 89.0
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 7.3e-28 126.7 73 87.7
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 7.3e-28 126.7 73 87.7
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 7.3e-28 126.7 73 86.3
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 6.2e-27 123.6 73 84.9
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 6.2e-27 123.6 72 87.5
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 6.2e-27 123.6 72 87.5
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 1.1e-26 122.9 72 84.7
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 1.8e-26 122.1 73 86.3
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 1.8e-26 122.1 73 84.9
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 3.1e-26 121.3 72 86.1
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 3.1e-26 121.3 72 86.1
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 3.1e-26 121.3 72 86.1
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 3.1e-26 121.3 72 86.1
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 4.0e-26 120.9 73 84.9
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 4.0e-26 120.9 73 83.6
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 5.3e-26 120.6 73 84.9
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.9e-26 120.2 73 84.9
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 6.9e-26 120.2 73 83.6
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.2e-25 119.4 72 84.7
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 1.5e-25 119.0 72 84.7
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 1.5e-25 119.0 73 84.9
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 1.5e-25 119.0 72 84.7
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 2.0e-25 118.6 73 83.6
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 2.0e-25 118.6 72 84.7
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 2.0e-25 118.6 73 80.8
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 2.0e-25 118.6 73 83.6
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 2.0e-25 118.6 73 83.6
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 2.0e-25 118.6 73 83.6
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 2.6e-25 118.2 72 84.7
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 4.4e-25 117.5 72 81.9
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 5.8e-25 117.1 72 81.9
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 5.8e-25 117.1 73 79.5
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 5.8e-25 117.1 73 79.5
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 5.8e-25 117.1 73 79.5
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 9.9e-25 116.3 72 81.9
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 1.3e-24 115.9 72 81.9
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 1.7e-24 115.5 72 81.9
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 2.2e-24 115.2 72 81.9
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 2.2e-24 115.2 73 82.2
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 2.2e-24 115.2 73 78.1
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 2.9e-24 114.8 73 79.5
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 2.9e-24 114.8 73 79.5
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 2.9e-24 114.8 73 79.5
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 2.9e-24 114.8 73 79.5
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 2.9e-24 114.8 73 79.5
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 2.9e-24 114.8 73 79.5
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 2.9e-24 114.8 73 79.5
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 2.9e-24 114.8 73 79.5
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 2.9e-24 114.8 73 79.5
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 2.9e-24 114.8 73 79.5
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.4e-24 113.6 66 89.4
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.4e-24 113.6 73 80.8
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 1.9e-23 112.1 71 81.7
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 2.4e-23 111.7 72 79.2
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 4.2e-23 110.9 68 83.8
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 4.2e-23 110.9 68 83.8
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 4.2e-23 110.9 68 83.8
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 4.2e-23 110.9 68 83.8
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 4.2e-23 110.9 68 83.8
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 5.4e-23 110.5 72 77.8
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 5.4e-23 110.5 73 74.0
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 2.1e-22 108.6 74 77.0
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 2.7e-22 108.2 73 78.1
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 3.0e-21 104.8 72 75.0
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 1.1e-20 102.8 64 84.4
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 1.1e-20 102.8 64 84.4
Gohir.A10G065880 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.1e-18 96.3 60 85.0
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 1.4e-18 95.9 61 78.7
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.1e-18 94.7 61 80.3
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 6.9e-18 93.6 61 80.3
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 9.0e-18 93.2 60 80.0
arahy.Tifrunner.gnm1.ann1.MI951N Arachis hypogaea HOM05D005015 ORTHO05D005696 7.6e-17 90.1 73 65.8
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 1.7e-16 89.0 56 80.4
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 1.1e-15 86.3 53 84.9
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 3.2e-15 84.7 54 79.6
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 5.4e-15 84.0 54 79.6
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.6e-14 82.4 51 82.4
SEGI_04828 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 7.9e-14 80.1 73 57.5
SEGI_35208 Sequoiadendron giganteum HOM05D005015 ORTHO05D005696 7.9e-14 80.1 73 57.5
Gorai.002G106400 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.9e-13 77.8 52 78.8
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 6.7e-13 77.0 58 70.7
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 2.5e-12 75.1 51 74.5
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 1.3e-11 72.8 47 76.6
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.3e-11 72.8 51 72.5
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.3e-11 72.8 51 72.5
Solyc07g021380.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 4.8e-11 70.9 54 74.1
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 1.5e-09 65.9 48 68.8
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 4.5e-09 64.3 45 73.3
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 1.3e-08 62.8 44 72.7
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 3.8e-08 61.2 34 88.2
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 3.8e-08 61.2 38 78.9
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 3.8e-08 61.2 38 78.9
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.2e-07 58.2 34 82.4
SMO086G0010 Selaginella moellendorffii HOM05D005015 ORTHO05D005696 7.1e-07 57.0 70 47.1
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 9.3e-07 56.6 33 81.8
A03p46590 Brassica napus HOM05D005015 ORTHO05D005696 1.2e-06 56.2 31 83.9
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 1.2e-06 56.2 34 79.4
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 1.2e-06 56.2 34 79.4
Gorai.004G111300 Gossypium raimondii HOM05D000743 ORTHO05D000580 1.2e-06 56.2 40 72.5
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 6.0e-06 53.9 47 63.8
Solyc10g044535.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 6.0e-06 53.9 45 62.2
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 7.9e-06 53.5 32 81.2


User provided reference genes

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