Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P334T10 Lonicera japonica HOM05D015521 ORTHO05D000368 1.9e-178 629.0 313 100.0
Lj1P336T14 Lonicera japonica HOM05D015521 ORTHO05D000368 3.0e-99 365.9 277 67.5
Aqoxy6G01742 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 5.3e-43 179.1 303 40.3
Aqoxy6G01747 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 6.9e-43 178.7 303 40.3
Dinv11451 Davidia involucrata HOM05D000576 ORTHO05D000368 2.9e-41 173.3 290 40.0
Rhsim13G0226200 Rhododendron simsii HOM05D000576 ORTHO05D000368 4.6e-31 139.4 296 36.8
QL11p001174 Quercus lobata HOM05D000576 ORTHO05D000368 1.1e-29 134.8 293 36.5
Manes.17G000300 Manihot esculenta HOM05D000576 ORTHO05D000368 1.1e-27 128.3 302 34.4
Manes.10G002300 Manihot esculenta HOM05D000576 ORTHO05D000368 2.0e-26 124.0 281 34.9
vmacro02127 Vaccinium macrocarpon HOM05D000003 ORTHO05D000004 2.7e-23 113.6 273 33.3
TAR636G0024 Trochodendron aralioides HOM05D000576 ORTHO05D000368 4.3e-21 106.3 270 30.4
Lj1E334T0 Lonicera japonica HOM05D015521 ORTHO05D000368 1.3e-20 104.8 72 69.4
Lj4P236T14 Lonicera japonica HOM05D015521 ORTHO05D000368 5.3e-19 99.4 161 39.1
TAR365G0708 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.2e-18 98.2 263 29.3
TAR633G2603 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.2e-18 98.2 281 28.1
TAR371G0526 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.5e-18 97.8 277 28.5
Dinv22828 Davidia involucrata HOM05D000576 ORTHO05D000368 5.9e-18 95.9 291 28.9
TAR633G1517 Trochodendron aralioides HOM05D000576 ORTHO05D000368 5.9e-18 95.9 278 28.4
Aqoxy5G04063 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 2.9e-17 93.6 205 31.7
COL.COLO4_15005 Corchorus olitorius HOM05D015521 ORTHO05D000368 2.9e-17 93.6 299 25.8
Migut.C01300 Erythranthe guttata HOM05D000576 ORTHO05D000368 5.0e-17 92.8 229 31.0
Rhsim02G0214100 Rhododendron simsii HOM05D000576 ORTHO05D000368 8.5e-17 92.0 296 28.7
Potri.016G106600 Populus trichocarpa HOM05D016710 ORTHO05D015329 1.1e-16 91.7 184 37.0
TAR633G1895 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.4e-16 91.3 246 28.5
CAN.G337.7 Capsicum annuum HOM05D009846 ORTHO05D000368 2.5e-16 90.5 258 30.2
CAN.G337.8 Capsicum annuum HOM05D009846 ORTHO05D000368 2.5e-16 90.5 258 30.2
TAR365G0551 Trochodendron aralioides HOM05D000576 ORTHO05D000368 2.5e-16 90.5 211 31.8
Aqoxy5G02891 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 3.2e-16 90.1 278 28.1
FAN14G2415 Fragaria x ananassa HOM05D000576 ORTHO05D000368 4.2e-16 89.7 250 29.6
TAR629G2683 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.6e-15 87.8 257 30.0
Ciclev10013373m.g Citrus clementina HOM05D000576 ORTHO05D000368 2.1e-15 87.4 286 25.5
Cc08_g15490 Coffea canephora HOM05D000576 ORTHO05D000368 2.7e-15 87.0 284 28.9
TAR371G1249 Trochodendron aralioides HOM05D000576 ORTHO05D000368 2.7e-15 87.0 202 33.7
TAR496G0003 Trochodendron aralioides HOM05D000576 ORTHO05D000368 2.7e-15 87.0 257 30.0
COL.COLO4_23029 Corchorus olitorius HOM05D000576 ORTHO05D000368 7.9e-15 85.5 248 29.0
TAR633G2125 Trochodendron aralioides HOM05D000576 ORTHO05D000368 7.9e-15 85.5 245 26.9
TAR636G3326 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.0e-14 85.1 301 26.6
Dinv21743 Davidia involucrata HOM05D000576 ORTHO05D000368 1.4e-14 84.7 298 25.5
vmacro03182 Vaccinium macrocarpon HOM05D000576 ORTHO05D000368 8.8e-14 82.0 305 28.9
COL.COLO4_15007 Corchorus olitorius HOM05D015521 ORTHO05D000368 1.1e-13 81.6 307 27.0
COL.COLO4_23025 Corchorus olitorius HOM05D000576 ORTHO05D000368 1.5e-13 81.3 246 27.6
CAN.G411.94 Capsicum annuum HOM05D009846 ORTHO05D000368 4.3e-13 79.7 223 30.0
SGA_v2.0_scaffold44G16702 Striga asiatica HOM05D000576 ORTHO05D000368 9.7e-13 78.6 291 25.8
vmacro06519 Vaccinium macrocarpon HOM05D010825 ORTHO05D012667 1.3e-12 78.2 231 29.9
TAR629G0101 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.7e-12 77.8 282 29.4
Aqoxy1G01400 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 2.2e-12 77.4 284 26.8
ECA233G4739 Erigeron canadensis HOM05D000576 ORTHO05D000368 2.2e-12 77.4 248 23.8
Gorai.007G326800 Gossypium raimondii HOM05D000576 ORTHO05D000368 2.8e-12 77.0 289 25.6
vmacro11253 Vaccinium macrocarpon HOM05D000576 ORTHO05D000368 2.8e-12 77.0 211 31.3
Gohir.D11G305509 Gossypium hirsutum HOM05D000576 ORTHO05D000368 4.8e-12 76.3 289 26.0
CAN.G473.66 Capsicum annuum HOM05D009846 ORTHO05D000002 1.8e-11 74.3 247 26.7
AUR62033150 Chenopodium quinoa HOM05D000576 ORTHO05D000368 1.8e-11 74.3 234 29.5
Cc05_g09460 Coffea canephora HOM05D009846 ORTHO05D000368 1.8e-11 74.3 224 28.6
COL.COLO4_35088 Corchorus olitorius HOM05D015521 ORTHO05D000368 1.8e-11 74.3 227 28.2
FAN14G3739 Fragaria x ananassa HOM05D000576 ORTHO05D000368 1.8e-11 74.3 191 29.3
Migut.C01195 Erythranthe guttata HOM05D000576 ORTHO05D000368 2.4e-11 73.9 234 26.9
FvH4_6g47821 Fragaria vesca HOM05D000576 ORTHO05D000368 3.1e-11 73.6 191 29.3
CSS0031751 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 4.1e-11 73.2 266 26.7
Gorai.007G326700 Gossypium raimondii HOM05D000576 ORTHO05D000368 4.1e-11 73.2 200 28.5
TAR374G0860 Trochodendron aralioides HOM05D000312 ORTHO05D000368 4.1e-11 73.2 137 37.2
TWI63G0496 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 5.3e-11 72.8 243 24.7
Dinv18996 Davidia involucrata HOM05D001396 ORTHO05D000493 2.0e-10 70.9 181 29.3
Gohir.D11G305503 Gossypium hirsutum HOM05D000576 ORTHO05D000368 2.0e-10 70.9 199 29.6
CAN.G1156.42 Capsicum annuum HOM05D013549 ORTHO05D000368 2.6e-10 70.5 229 27.5
TWI63G0418 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 3.4e-10 70.1 243 24.3
Lalb_Chr03g0040371 Lupinus albus HOM05D000576 ORTHO05D000368 4.5e-10 69.7 269 26.8
Os12g0127400 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 4.5e-10 69.7 183 31.1
FvH4_6g01331 Fragaria vesca HOM05D000576 ORTHO05D012667 1.0e-09 68.6 155 33.5
Cfa001772 Carpinus fangiana HOM05D000576 ORTHO05D000368 1.3e-09 68.2 242 24.4
Eucgr.A02273 Eucalyptus grandis HOM05D000576 ORTHO05D000368 1.7e-09 67.8 245 26.9
SGA_v2.0_scaffold181G39803 Striga asiatica HOM05D000576 ORTHO05D000368 1.7e-09 67.8 248 28.2
COL.COLO4_15002 Corchorus olitorius HOM05D015521 ORTHO05D000368 2.2e-09 67.4 146 28.8
CAN.G1156.32 Capsicum annuum HOM05D013549 ORTHO05D000368 2.9e-09 67.0 218 26.1
Migut.D00793 Erythranthe guttata HOM05D009846 ORTHO05D000368 3.8e-09 66.6 170 31.2
COL.COLO4_13869 Corchorus olitorius HOM05D010825 ORTHO05D012667 5.0e-09 66.2 261 27.2
Dinv39826 Davidia involucrata HOM05D001396 ORTHO05D000493 5.0e-09 66.2 181 28.7
Thhalv10027265m.g Eutrema salsugineum HOM05D002909 ORTHO05D000493 6.5e-09 65.9 185 29.7
Os04g0675800 Oryza sativa ssp. japonica HOM05D001982 ORTHO05D008035 6.5e-09 65.9 335 24.2
Dinv18998 Davidia involucrata HOM05D001396 ORTHO05D000493 1.1e-08 65.1 181 28.7
RcHm_v2.0_Chr2g0087591 Rosa chinensis HOM05D000576 ORTHO05D000368 1.1e-08 65.1 267 27.0
Dinv39825 Davidia involucrata HOM05D001396 ORTHO05D000493 1.9e-08 64.3 181 28.2
Os06g0161300 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 1.9e-08 64.3 315 24.1
FAN02G2714 Fragaria x ananassa HOM05D006084 ORTHO05D007449 2.5e-08 63.9 198 30.3
TPR.G24323 Trifolium pratense HOM05D008175 ORTHO05D010403 3.2e-08 63.5 215 26.0
Dinv18995 Davidia involucrata HOM05D001396 ORTHO05D000493 4.2e-08 63.2 180 27.2
Migut.C01193 Erythranthe guttata HOM05D031909 ORTHO05D000368 5.5e-08 62.8 122 32.0
Migut.C01202 Erythranthe guttata HOM05D031909 ORTHO05D000368 5.5e-08 62.8 122 32.0
Medtr1g011400 Medicago truncatula HOM05D000312 ORTHO05D000221 5.5e-08 62.8 245 28.6
Peaxi162Scf00066g01521 Petunia axillaris HOM05D005268 ORTHO05D000493 5.5e-08 62.8 182 26.4
Aqoxy4G02514 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 7.2e-08 62.4 279 26.5
FAN14G0812 Fragaria x ananassa HOM05D000576 ORTHO05D000368 7.2e-08 62.4 197 27.4
EL10Ac5g12445 Beta vulgaris HOM05D000576 ORTHO05D000368 9.4e-08 62.0 241 25.3
CAN.G1986.3 Capsicum annuum HOM05D013549 ORTHO05D000368 9.4e-08 62.0 222 26.6
CAN.G206.200 Capsicum annuum HOM05D009846 ORTHO05D000368 9.4e-08 62.0 159 31.4
COL.COLO4_14986 Corchorus olitorius HOM05D000576 ORTHO05D000368 9.4e-08 62.0 262 24.0
Eucgr.F03892 Eucalyptus grandis HOM05D020427 ORTHO05D000493 9.4e-08 62.0 186 25.8
Eucgr.F03902 Eucalyptus grandis HOM05D001396 ORTHO05D000493 9.4e-08 62.0 186 25.8
FvH4_6g50840 Fragaria vesca HOM05D000576 ORTHO05D000368 9.4e-08 62.0 200 27.5
FAN05G3797 Fragaria x ananassa HOM05D000576 ORTHO05D000368 9.4e-08 62.0 202 28.2
Migut.E00546 Erythranthe guttata HOM05D005930 ORTHO05D003423 1.6e-07 61.2 179 29.1
ATR0099G020 Amborella trichopoda HOM05D000312 ORTHO05D000221 2.1e-07 60.8 216 29.6
COL.COLO4_21901 Corchorus olitorius HOM05D010825 ORTHO05D012667 2.1e-07 60.8 242 26.9
Migut.E00914 Erythranthe guttata HOM05D005930 ORTHO05D003423 2.1e-07 60.8 181 28.7
Migut.E00513 Erythranthe guttata HOM05D005930 ORTHO05D003423 2.7e-07 60.5 179 27.9
MBI02_g05996_MAGBIO Magnolia biondii HOM05D000312 ORTHO05D008290 2.7e-07 60.5 242 24.8
Medtr7g116580 Medicago truncatula HOM05D009500 ORTHO05D000368 2.7e-07 60.5 215 27.0
Ciclev10020079m.g Citrus clementina HOM05D000576 ORTHO05D000368 3.6e-07 60.1 270 22.6
MD09G1063900 Malus domestica HOM05D000576 ORTHO05D000368 3.6e-07 60.1 187 29.4
Dinv18997 Davidia involucrata HOM05D001396 ORTHO05D000493 4.7e-07 59.7 182 28.0
Migut.E00509 Erythranthe guttata HOM05D005930 ORTHO05D003423 4.7e-07 59.7 179 27.9
Migut.E00523 Erythranthe guttata HOM05D005930 ORTHO05D003423 4.7e-07 59.7 178 29.8
Migut.G00964 Erythranthe guttata HOM05D000576 ORTHO05D000368 4.7e-07 59.7 220 25.9
FvH4_6g48151 Fragaria vesca HOM05D000576 ORTHO05D000368 4.7e-07 59.7 193 26.9
Manes.11G029400 Manihot esculenta HOM05D001477 ORTHO05D001182 4.7e-07 59.7 232 24.6
COL.COLO4_04588 Corchorus olitorius HOM05D010825 ORTHO05D012667 6.1e-07 59.3 82 41.5
TPR.G33251 Trifolium pratense HOM05D000576 ORTHO05D000368 6.1e-07 59.3 214 27.1
CAN.G1921.1 Capsicum annuum HOM05D009846 ORTHO05D000368 7.9e-07 58.9 230 24.8
MD00G1039500 Malus domestica HOM05D000312 ORTHO05D000221 1.0e-06 58.5 237 27.8
Medtr2g047872 Medicago truncatula HOM05D000312 ORTHO05D000221 1.0e-06 58.5 190 27.4
Medtr7g116250 Medicago truncatula HOM05D008175 ORTHO05D000368 1.0e-06 58.5 219 24.7
Nitab4.5_0000551g0110 Nicotiana tabacum HOM05D001396 ORTHO05D000493 1.0e-06 58.5 200 28.0
Hund26595 Selenicereus undatus HOM05D000312 ORTHO05D000221 1.0e-06 58.5 241 24.9
SGA_v2.0_scaffold24G10274 Striga asiatica HOM05D000312 ORTHO05D000221 1.0e-06 58.5 193 29.0
Zm00001eb066990 Zea mays HOM05D015059 ORTHO05D000368 1.0e-06 58.5 222 26.1
CAN.G371.120 Capsicum annuum HOM05D000312 ORTHO05D000221 1.4e-06 58.2 274 25.5
PGSC0003DMG400006095 Solanum tuberosum HOM05D006683 ORTHO05D008629 1.4e-06 58.2 290 23.1
TPR.G9274 Trifolium pratense HOM05D009500 ORTHO05D000368 1.4e-06 58.2 144 27.8
TAR371G0223 Trochodendron aralioides HOM05D000312 ORTHO05D000221 1.4e-06 58.2 197 27.9
AUR62033154 Chenopodium quinoa HOM05D000576 ORTHO05D015329 1.8e-06 57.8 184 27.7
AUR62033859 Chenopodium quinoa HOM05D000312 ORTHO05D000221 1.8e-06 57.8 231 28.1
Nitab4.5_0012474g0030 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.8e-06 57.8 192 26.0
Thecc.06G198800 Theobroma cacao HOM05D001396 ORTHO05D000493 1.8e-06 57.8 191 27.7
AUR62033151 Chenopodium quinoa HOM05D000576 ORTHO05D000368 2.3e-06 57.4 232 26.7
Migut.E00956 Erythranthe guttata HOM05D005930 ORTHO05D003423 2.3e-06 57.4 181 27.6
Os11g0130500 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 2.3e-06 57.4 106 34.0
RcHm_v2.0_Chr5g0069791 Rosa chinensis HOM05D000051 ORTHO05D000015 2.3e-06 57.4 227 29.1
COL.COLO4_23656 Corchorus olitorius HOM05D010825 ORTHO05D012667 3.0e-06 57.0 133 31.6
COL.COLO4_31648 Corchorus olitorius HOM05D010825 ORTHO05D012667 3.0e-06 57.0 162 29.0
Medtr8g468470 Medicago truncatula HOM05D000576 ORTHO05D000368 3.0e-06 57.0 203 26.1
Nitab4.5_0000110g0120 Nicotiana tabacum HOM05D000312 ORTHO05D000221 3.0e-06 57.0 192 26.0
Peaxi162Scf00168g00921 Petunia axillaris HOM05D005268 ORTHO05D000493 3.0e-06 57.0 183 29.5
SGA_v2.0_scaffold287G47213 Striga asiatica HOM05D000576 ORTHO05D000368 3.0e-06 57.0 132 33.3
Zm00001eb067000 Zea mays HOM05D015059 ORTHO05D000368 3.0e-06 57.0 222 25.7
COL.COLO4_20879 Corchorus olitorius HOM05D000186 ORTHO05D001124 3.9e-06 56.6 234 24.4
AUR62041668 Chenopodium quinoa HOM05D000312 ORTHO05D000221 5.1e-06 56.2 231 28.1
PGSC0003DMG400018867 Solanum tuberosum HOM05D006683 ORTHO05D008629 6.7e-06 55.8 233 26.6
Zm00001eb067010 Zea mays HOM05D015059 ORTHO05D000368 6.7e-06 55.8 222 25.7
FAN05G2407 Fragaria x ananassa HOM05D000576 ORTHO05D000368 8.8e-06 55.5 193 27.5
FAN14G2737 Fragaria x ananassa HOM05D000385 ORTHO05D000269 8.8e-06 55.5 193 26.9
Medtr7g114090 Medicago truncatula HOM05D009500 ORTHO05D000368 8.8e-06 55.5 150 27.3
Os11g0539700 Oryza sativa ssp. japonica HOM05D015059 ORTHO05D000368 8.8e-06 55.5 241 23.2
Zm00001eb066980 Zea mays HOM05D015059 ORTHO05D000368 8.8e-06 55.5 177 25.4


User provided reference genes

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