Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P206T25 Lonicera japonica HOM05D007212 ORTHO05D009094 4.7e-100 367.9 183 100.0
Hma1.2p1_0094F.1_g047150 Hydrangea macrophylla HOM05D007212 ORTHO05D009094 6.9e-43 177.9 137 65.0
CSS0026864 Camellia sinensis var. sinensis HOM05D007212 ORTHO05D009094 1.4e-40 170.2 143 64.3
arahy.Tifrunner.gnm1.ann1.0V2A2H Arachis hypogaea HOM05D007212 ORTHO05D009094 3.9e-38 162.2 121 62.0
arahy.Tifrunner.gnm1.ann1.C93D89 Arachis hypogaea HOM05D007212 ORTHO05D009094 3.9e-38 162.2 121 62.0
Sed0018920 Sechium edule HOM05D007212 ORTHO05D009094 1.5e-37 160.2 108 67.6
DCAR_015608 Daucus carota HOM05D007212 ORTHO05D009094 1.9e-37 159.8 151 58.3
CAN.G764.6 Capsicum annuum HOM05D007212 ORTHO05D009094 2.5e-37 159.5 115 66.1
Rhsim13G0085700 Rhododendron simsii HOM05D007212 ORTHO05D009094 2.5e-37 159.5 145 58.6
Psat7g177640 Pisum sativum HOM05D007212 ORTHO05D009094 3.3e-37 159.1 132 58.3
Potri.001G236800 Populus trichocarpa HOM05D007212 ORTHO05D009094 4.3e-37 158.7 142 58.5
Sabra16G0142600 Salix brachista HOM05D007212 ORTHO05D009094 4.3e-37 158.7 142 59.2
GSVIVG01025017001 Vitis vinifera HOM05D007212 ORTHO05D009094 4.3e-37 158.7 107 69.2
Lalb_Chr01g0001381 Lupinus albus HOM05D007212 ORTHO05D009094 5.6e-37 158.3 123 61.8
PGR142G1175 Punica granatum HOM05D007212 ORTHO05D009094 9.6e-37 157.5 106 67.9
Atru.chr3.3834 Acer truncatum HOM05D007212 ORTHO05D009094 1.6e-36 156.8 111 66.7
MELO3C035453.2 Cucumis melo HOM05D007212 ORTHO05D009094 1.6e-36 156.8 110 65.5
PGR119G1050 Punica granatum HOM05D007212 ORTHO05D009094 1.6e-36 156.8 106 67.9
Solyc11g073270.1 Solanum lycopersicum HOM05D007212 ORTHO05D009094 1.6e-36 156.8 116 66.4
Sopen11g030900 Solanum pennellii HOM05D007212 ORTHO05D009094 1.6e-36 156.8 116 66.4
HanXRQChr08g0227881 Helianthus annuus HOM05D007212 ORTHO05D009094 2.8e-36 156.0 138 55.8
vmacro03100 Vaccinium macrocarpon HOM05D007212 ORTHO05D009094 2.8e-36 156.0 138 59.4
Ciclev10027786m.g Citrus clementina HOM05D007212 ORTHO05D009094 3.6e-36 155.6 112 65.2
Lsat_1_v5_gn_9_22380 Lactuca sativa HOM05D007212 ORTHO05D009094 4.8e-36 155.2 133 60.9
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 1.8e-35 153.3 144 56.9
Glyma.12G024900 Glycine max HOM05D007212 ORTHO05D009094 2.4e-35 152.9 126 57.1
TPR.G17150 Trifolium pratense HOM05D007212 ORTHO05D009094 2.4e-35 152.9 136 53.7
TAR633G0773 Trochodendron aralioides HOM05D007212 ORTHO05D009094 3.1e-35 152.5 139 59.0
Glyma.11G098900 Glycine max HOM05D007212 ORTHO05D009094 5.3e-35 151.8 116 59.5
QL01p032998 Quercus lobata HOM05D007212 ORTHO05D009094 6.9e-35 151.4 143 53.8
CiPaw.14G071200 Carya illinoinensis HOM05D007212 ORTHO05D009094 9.0e-35 151.0 142 54.2
Prupe.6G082100 Prunus persica HOM05D007212 ORTHO05D009094 9.0e-35 151.0 140 56.4
Medtr4g075270 Medicago truncatula HOM05D007212 ORTHO05D009094 1.2e-34 150.6 116 58.6
FAN21G3687 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.5e-34 150.2 132 57.6
FAN16G0386 Fragaria x ananassa HOM05D007212 ORTHO05D009094 2.0e-34 149.8 132 56.8
Aqoxy4G02992 Aquilegia oxysepala HOM05D007212 ORTHO05D009094 3.4e-34 149.1 140 55.7
FvH4_3g35360 Fragaria vesca HOM05D007212 ORTHO05D009094 3.4e-34 149.1 132 56.8
VMungo1127G0797 Vigna mungo HOM05D007212 ORTHO05D009094 3.4e-34 149.1 126 57.1
Cfa011459 Carpinus fangiana HOM05D007212 ORTHO05D009094 4.5e-34 148.7 142 54.9
FAN11G2747 Fragaria x ananassa HOM05D007212 ORTHO05D009094 9.9e-34 147.5 132 56.1
Haze_24045 Corylus avellana HOM05D007212 ORTHO05D009094 1.3e-33 147.1 137 58.4
TWI79G1118 Tripterygium wilfordii HOM05D007212 ORTHO05D009094 2.2e-33 146.4 122 59.8
SalBow3G0436 Salvia bowleyana HOM05D007212 ORTHO05D009094 3.8e-33 145.6 109 61.5
MSTRG.21188 Avicennia marina HOM05D007212 ORTHO05D009094 1.1e-32 144.1 127 56.7
Phvul.011G027200 Phaseolus vulgaris HOM05D007212 ORTHO05D009094 5.4e-32 141.7 126 54.8
Nn2g10429 Nelumbo nucifera HOM05D007212 ORTHO05D009094 7.1e-32 141.4 106 67.0
Cpa.g.sc190.19 Carica papaya HOM05D007212 ORTHO05D009094 1.2e-31 140.6 121 54.5
Actinidia07048 Actinidia chinensis HOM05D007212 ORTHO05D009094 1.6e-31 140.2 99 63.6
Migut.G01143 Erythranthe guttata HOM05D007212 ORTHO05D009094 2.1e-31 139.8 115 57.4
COL.COLO4_18464 Corchorus olitorius HOM05D007212 ORTHO05D009094 3.5e-31 139.0 108 60.2
Migut.D02115 Erythranthe guttata HOM05D007212 ORTHO05D009094 3.5e-31 139.0 115 56.5
THA.LOC104814860 Tarenaya hassleriana HOM05D007212 ORTHO05D009094 1.3e-30 137.1 138 51.4
Eucgr.J02064 Eucalyptus grandis HOM05D007212 ORTHO05D009094 1.8e-30 136.7 106 61.3
Sc09g0001880 Simmondsia chinensis HOM05D007212 ORTHO05D009094 1.8e-30 136.7 109 62.4
Thhalv10016210m.g Eutrema salsugineum HOM05D007212 ORTHO05D009094 6.7e-30 134.8 105 59.0
Oeu041026.1 Olea europaea HOM05D007212 ORTHO05D009094 6.7e-30 134.8 98 62.2
Thecc.09G326300 Theobroma cacao HOM05D007212 ORTHO05D009094 1.5e-29 133.7 126 54.0
Aa31sc23G60 Aethionema arabicum HOM05D007212 ORTHO05D009094 1.9e-29 133.3 119 53.8
CDE09G0292 Ceratophyllum demersum HOM05D007212 ORTHO05D009094 2.5e-29 132.9 118 53.4
BcaC04g19649 Brassica carinata HOM05D007212 ORTHO05D009094 4.3e-29 132.1 106 54.7
C09p52430 Brassica napus HOM05D007212 ORTHO05D009094 4.3e-29 132.1 106 54.7
BolC9t58111H Brassica oleracea HOM05D007212 ORTHO05D009094 4.3e-29 132.1 106 54.7
CARHR273510 Cardamine hirsuta HOM05D007212 ORTHO05D009094 4.3e-29 132.1 120 53.3
BraA10t43795Z Brassica rapa HOM05D007212 ORTHO05D009094 9.6e-29 131.0 106 54.7
AL8G36470 Arabidopsis lyrata HOM05D007212 ORTHO05D009094 1.3e-28 130.6 105 56.2
SGA_v2.0_scaffold134G34680 Striga asiatica HOM05D007212 ORTHO05D009094 1.6e-28 130.2 98 60.2
Carub.0008s2053 Capsella rubella HOM05D007212 ORTHO05D009094 2.1e-28 129.8 119 52.1
SHI05964 Sapria himalayana HOM05D007212 ORTHO05D009094 2.1e-28 129.8 119 54.6
A10p17130 Brassica napus HOM05D007212 ORTHO05D009094 3.7e-28 129.0 104 55.8
Gorai.003G135500 Gossypium raimondii HOM05D007212 ORTHO05D009094 3.7e-28 129.0 112 57.1
Sp6g21610 Schrenkiella parvula HOM05D007212 ORTHO05D009094 3.7e-28 129.0 104 57.7
MBI05_g20726_MAGBIO Magnolia biondii HOM05D007212 ORTHO05D009094 8.1e-28 127.9 138 52.9
AT5G59900 Arabidopsis thaliana HOM05D007212 ORTHO05D009094 1.1e-27 127.5 105 55.2
BcaB08g36211 Brassica carinata HOM05D007212 ORTHO05D009094 4.0e-27 125.6 104 53.8
Lj3g0025740 Lotus japonicus HOM05D007212 ORTHO05D009094 9.0e-27 124.4 122 48.4
PSO339G3988 Papaver somniferum HOM05D007212 ORTHO05D009094 7.6e-26 121.3 144 47.9
EL10Ac6g14030 Beta vulgaris HOM05D007212 ORTHO05D009094 1.2e-23 114.0 97 60.8
Migut.G01106 Erythranthe guttata HOM05D007212 ORTHO05D009094 7.9e-23 111.3 84 60.7
AUR62040786 Chenopodium quinoa HOM05D001653 ORTHO05D001751 1.0e-22 110.9 110 51.8
Ah.02g128350 Amaranthus hybridus HOM05D007212 ORTHO05D009094 1.3e-22 110.5 150 44.0
ATR0580G451 Amborella trichopoda HOM05D007212 ORTHO05D009094 3.3e-21 105.9 91 54.9
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 2.1e-20 103.2 109 45.0
BcaC04g19592 Brassica carinata HOM05D006590 ORTHO05D008427 3.9e-14 82.4 88 45.5
Cc01_g12460 Coffea canephora HOM05D007212 ORTHO05D009094 2.6e-10 69.7 50 60.0
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 2.2e-09 66.6 42 69.0
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 6.5e-09 65.1 39 69.2
RcHm_v2.0_Chr5g0063471 Rosa chinensis HOM05D007212 ORTHO05D009094 1.1e-08 64.3 87 43.7
PGSC0003DMG400008266 Solanum tuberosum HOM05D007675 ORTHO05D009699 4.2e-08 62.4 137 31.4
CAN.G630.43 Capsicum annuum HOM05D007675 ORTHO05D009699 1.0e-06 57.8 132 33.3
Aqoxy5G03884 Aquilegia oxysepala HOM05D007496 ORTHO05D009479 1.8e-06 57.0 104 28.8
COL.COLO4_27514 Corchorus olitorius HOM05D007496 ORTHO05D009479 3.9e-06 55.8 154 28.6
QL08p010035 Quercus lobata HOM05D007291 ORTHO05D009038 5.1e-06 55.5 123 28.5
Sopen10g022700 Solanum pennellii HOM05D007675 ORTHO05D009699 5.1e-06 55.5 118 32.2
Actinidia28812 Actinidia chinensis HOM05D007291 ORTHO05D009038 8.8e-06 54.7 136 26.5
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 8.8e-06 54.7 42 59.5
C07p33010 Brassica napus HOM05D007496 ORTHO05D009479 8.8e-06 54.7 157 29.9
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 8.8e-06 54.7 42 59.5


User provided reference genes

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