Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 1.5e-178 629.4 329 100.0
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 4.4e-48 196.1 301 44.2
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 1.4e-46 191.0 321 43.3
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 1.2e-45 188.0 344 42.7
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 6.5e-44 182.2 343 39.9
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 9.4e-43 178.3 305 41.6
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 4.0e-41 172.9 324 39.5
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 1.5e-40 171.0 339 39.2
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 2.6e-40 170.2 299 41.1
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.7e-39 167.5 317 41.6
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.0e-36 158.3 317 40.4
Lj9C374G8 Lonicera japonica HOM05D003726 ORTHO05D003520 1.7e-36 157.5 106 80.2
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 3.8e-36 156.4 308 39.6
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 5.0e-36 156.0 319 40.4
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.5e-35 154.5 278 39.6
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.5e-35 154.5 324 38.0
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 2.5e-35 153.7 302 39.1
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.1e-34 150.6 328 39.3
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 3.6e-34 149.8 337 35.9
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 6.1e-34 149.1 321 36.4
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 8.0e-34 148.7 330 39.1
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 1.8e-33 147.5 339 38.1
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 8.9e-33 145.2 330 38.5
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 8.9e-33 145.2 329 39.2
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.3e-31 141.4 334 35.3
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 4.9e-31 139.4 341 37.0
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 8.3e-31 138.7 332 36.7
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 1.0e-28 131.7 303 36.3
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 3.8e-28 129.8 323 36.5
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 5.0e-28 129.4 207 45.4
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 2.5e-27 127.1 287 36.6
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 4.3e-27 126.3 298 34.9
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 4.7e-26 122.9 223 38.1
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 4.7e-26 122.9 299 36.5
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 1.0e-25 121.7 310 35.5
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 2.3e-25 120.6 315 34.3
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 4.0e-25 119.8 314 36.9
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 1.2e-24 118.2 290 35.2
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 2.0e-24 117.5 316 33.2
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 2.0e-24 117.5 338 32.0
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 7.5e-24 115.5 290 34.1
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 9.8e-24 115.2 323 34.7
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 1.3e-23 114.8 305 34.8
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.7e-23 114.4 297 33.3
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 2.2e-23 114.0 306 35.6
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 3.7e-23 113.2 346 34.1
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 4.9e-23 112.8 316 32.0
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 6.4e-23 112.5 314 34.7
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 8.3e-23 112.1 321 32.1
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.9e-22 110.9 328 34.1
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 5.4e-22 109.4 327 34.9
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 9.2e-22 108.6 331 33.2
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 9.2e-22 108.6 320 34.4
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 3.5e-21 106.7 321 31.8
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 7.8e-21 105.5 282 35.1
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.3e-20 104.8 333 33.6
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 8.6e-20 102.1 321 34.3
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 1.5e-19 101.3 304 30.6
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 3.3e-19 100.1 333 31.5
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 5.6e-19 99.4 319 34.2
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 1.6e-18 97.8 308 33.1
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.7e-18 96.3 297 29.6
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 6.2e-18 95.9 283 31.1
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 6.2e-18 95.9 297 29.6
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 3.1e-17 93.6 313 32.3
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 4.0e-17 93.2 325 31.1
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 5.2e-17 92.8 300 33.7
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 6.8e-17 92.4 307 29.3
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 6.8e-17 92.4 323 33.7
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 6.8e-17 92.4 319 32.6
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 6.8e-17 92.4 292 30.8
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 8.9e-17 92.0 331 33.5
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 1.2e-16 91.7 293 31.4
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 1.2e-16 91.7 329 32.8
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.0e-16 90.9 318 32.7
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 2.6e-16 90.5 320 30.9
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 3.4e-16 90.1 284 31.3
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 3.4e-16 90.1 281 31.7
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 4.4e-16 89.7 286 32.9
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 9.8e-16 88.6 300 30.7
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 1.7e-15 87.8 301 30.2
TPR.G34575 Trifolium pratense HOM05D003726 ORTHO05D003520 2.2e-15 87.4 303 32.0
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 2.2e-15 87.4 291 31.6
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 6.4e-15 85.9 289 29.8
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 8.3e-15 85.5 326 32.8
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 1.4e-14 84.7 309 30.1
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 2.4e-14 84.0 295 31.5
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 3.2e-14 83.6 299 29.4
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 7.0e-14 82.4 288 30.9
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 1.6e-13 81.3 293 30.4
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 2.1e-13 80.9 305 29.2
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 4.6e-13 79.7 324 32.4
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 1.7e-12 77.8 322 31.4
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 3.9e-12 76.6 294 31.6
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 3.9e-12 76.6 311 30.2
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 3.9e-12 76.6 266 28.9
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 5.1e-12 76.3 294 31.3
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 6.6e-12 75.9 293 30.0
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 8.6e-12 75.5 202 32.7
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 1.1e-11 75.1 294 29.3
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 1.5e-11 74.7 316 30.7
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 2.5e-11 73.9 279 29.7
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 2.5e-11 73.9 321 27.4
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 5.6e-11 72.8 298 31.2
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 5.6e-11 72.8 272 29.8
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 9.5e-11 72.0 206 31.6
Psat2g057960 Pisum sativum HOM05D003726 ORTHO05D003520 1.6e-10 71.2 302 30.8
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 3.6e-10 70.1 302 30.1
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 3.6e-10 70.1 341 29.0
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 4.7e-10 69.7 238 29.4
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 6.2e-10 69.3 230 31.7
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 6.2e-10 69.3 320 26.9
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 8.1e-10 68.9 314 29.9
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 8.1e-10 68.9 289 27.7
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 8.1e-10 68.9 281 26.7
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.4e-09 68.2 269 28.3
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 1.8e-09 67.8 294 28.6
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 4.0e-09 66.6 283 29.0
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 4.0e-09 66.6 274 30.7
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 5.2e-09 66.2 221 32.6
SalBow4G2563 Salvia bowleyana HOM05D003726 ORTHO05D003520 5.2e-09 66.2 115 36.5
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 6.8e-09 65.9 319 29.8
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 6.8e-09 65.9 319 29.8
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 6.8e-09 65.9 277 29.6
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 6.8e-09 65.9 330 27.6
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 1.5e-08 64.7 311 29.9
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 1.5e-08 64.7 320 30.0
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 2.0e-08 64.3 299 29.8
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 2.6e-08 63.9 302 28.5
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 3.4e-08 63.5 167 38.3
CSS0029870 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 4.4e-08 63.2 229 33.2
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 7.5e-08 62.4 254 28.7
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 7.5e-08 62.4 288 26.0
AUR62030799 Chenopodium quinoa HOM05D029928 ORTHO05D003520 1.7e-07 61.2 127 31.5
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 1.7e-07 61.2 312 26.6
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.7e-07 61.2 232 25.9
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.9e-07 60.5 306 26.5
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 2.9e-07 60.5 232 25.9
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 2.9e-07 60.5 316 29.4
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 4.9e-07 59.7 282 28.0
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 4.9e-07 59.7 290 27.2
CSS0025538 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 6.4e-07 59.3 229 32.3
CDE04G1884 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 6.4e-07 59.3 323 27.9
CDE08G1412 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 8.3e-07 58.9 324 26.9
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 8.3e-07 58.9 303 26.4
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 8.3e-07 58.9 312 26.3
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 1.4e-06 58.2 308 27.6
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.4e-06 58.2 303 27.1
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 1.9e-06 57.8 298 25.8
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 1.9e-06 57.8 164 29.9
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 2.4e-06 57.4 261 28.7
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 2.4e-06 57.4 310 29.0
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 3.2e-06 57.0 279 26.2
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 9.2e-06 55.5 263 24.3
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 9.2e-06 55.5 263 24.3


User provided reference genes

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