Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P1226T19 Lonicera japonica HOM05D007956 ORTHO05D010152 3.7e-244 848.2 577 100.0
vmacro03705 Vaccinium macrocarpon HOM05D007956 ORTHO05D010152 1.7e-127 460.7 570 59.3
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 6.6e-124 448.7 557 47.8
Oeu002723.1 Olea europaea HOM05D007956 ORTHO05D010152 5.6e-123 445.7 565 43.4
Potri.004G020900 Populus trichocarpa HOM05D007956 ORTHO05D010152 2.6e-120 436.8 554 55.4
Cc02_g11640 Coffea canephora HOM05D007956 ORTHO05D010152 6.0e-117 425.6 577 40.7
TWI38G0189 Tripterygium wilfordii HOM05D007956 ORTHO05D010152 1.7e-116 424.1 577 42.1
Sabra04G0011500 Salix brachista HOM05D007956 ORTHO05D010152 2.3e-116 423.7 563 42.6
Nitab4.5_0005793g0030 Nicotiana tabacum HOM05D007956 ORTHO05D010152 6.6e-116 422.2 575 53.4
Manes.16G011600 Manihot esculenta HOM05D007956 ORTHO05D010152 3.1e-113 413.3 560 57.3
Cfa000267 Carpinus fangiana HOM05D007956 ORTHO05D010152 2.0e-112 410.6 575 43.8
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 2.6e-112 410.2 576 51.9
Ciclev10018367m.g Citrus clementina HOM05D007956 ORTHO05D010152 2.9e-111 406.8 568 53.2
QL05p074803 Quercus lobata HOM05D007956 ORTHO05D010152 4.6e-109 399.4 577 55.8
MD00G1180200 Malus domestica HOM05D007956 ORTHO05D010152 1.7e-108 397.5 559 51.7
CiPaw.09G087900 Carya illinoinensis HOM05D007956 ORTHO05D010152 3.9e-108 396.4 573 51.3
Actinidia05532 Actinidia chinensis HOM05D007956 ORTHO05D010152 8.6e-108 395.2 518 59.8
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 1.1e-107 394.8 387 53.2
Nitab4.5_0002347g0140 Nicotiana tabacum HOM05D007956 ORTHO05D010152 4.3e-107 392.9 573 45.2
Gorai.009G176500 Gossypium raimondii HOM05D007956 ORTHO05D010152 9.5e-107 391.7 577 38.5
Thecc.06G215000 Theobroma cacao HOM05D007956 ORTHO05D010152 1.2e-106 391.3 573 49.6
Duzib235G1205 Durio zibethinus HOM05D007956 ORTHO05D010152 1.6e-106 391.0 559 39.4
COL.COLO4_06641 Corchorus olitorius HOM05D007956 ORTHO05D010152 1.5e-104 384.4 572 38.1
Migut.M01290 Erythranthe guttata HOM05D007956 ORTHO05D010152 7.5e-104 382.1 555 43.4
PGR042G2623 Punica granatum HOM05D007956 ORTHO05D010152 2.4e-102 377.1 576 37.5
PGSC0003DMG400002071 Solanum tuberosum HOM05D007956 ORTHO05D010152 9.2e-102 375.2 574 39.7
CANSAT56G1376 Cannabis sativa HOM05D007956 ORTHO05D010152 1.2e-101 374.8 577 49.2
SalBow8G0305 Salvia bowleyana HOM05D007956 ORTHO05D010152 4.6e-101 372.9 565 38.4
Solyc02g080170.1 Solanum lycopersicum HOM05D007956 ORTHO05D010152 7.8e-101 372.1 574 39.0
Sopen02g024890 Solanum pennellii HOM05D007956 ORTHO05D010152 1.7e-100 370.9 574 40.8
Lsat_1_v5_gn_4_59081 Lactuca sativa HOM05D007956 ORTHO05D010152 2.3e-100 370.5 584 37.7
HanXRQChr16g0515891 Helianthus annuus HOM05D007956 ORTHO05D010152 3.0e-100 370.2 577 37.8
MSTRG.15969 Avicennia marina HOM05D007956 ORTHO05D010152 1.6e-98 364.4 562 44.1
Sc17g0007100 Simmondsia chinensis HOM05D007956 ORTHO05D010152 2.4e-97 360.5 565 37.0
CAN.G569.38 Capsicum annuum HOM05D007956 ORTHO05D010152 7.6e-96 355.5 568 38.9
EL10Ac8g19997 Beta vulgaris HOM05D007956 ORTHO05D010152 1.9e-94 350.9 562 35.6
Eucgr.E04114 Eucalyptus grandis HOM05D007956 ORTHO05D010152 2.4e-94 350.5 578 49.3
FAN25G3383 Fragaria x ananassa HOM05D007956 ORTHO05D010152 6.0e-93 345.9 559 53.0
Peaxi162Scf00427g00116 Petunia axillaris HOM05D007956 ORTHO05D010152 6.0e-93 345.9 566 48.4
RcHm_v2.0_Chr5g0003911 Rosa chinensis HOM05D007956 ORTHO05D010152 1.9e-91 340.9 369 47.4
AUR62012653 Chenopodium quinoa HOM05D007956 ORTHO05D010152 3.6e-90 336.7 557 38.1
SGA_v2.0_scaffold114G32030 Striga asiatica HOM05D007956 ORTHO05D010152 8.1e-90 335.5 558 35.3
Thhalv10024760m.g Eutrema salsugineum HOM05D007956 ORTHO05D010152 8.1e-82 308.9 587 32.7
MBI18_g39550_MAGBIO Magnolia biondii HOM05D007956 ORTHO05D010152 2.4e-81 307.4 555 33.5
Carub.0007s2026 Capsella rubella HOM05D007956 ORTHO05D010152 4.5e-80 303.1 577 31.7
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 6.4e-79 299.3 377 69.5
AL7G32950 Arabidopsis lyrata HOM05D007956 ORTHO05D010152 4.6e-77 293.1 577 30.8
BcaNung03837 Brassica carinata HOM05D007956 ORTHO05D010152 2.3e-76 290.8 589 33.1
AT4G21170 Arabidopsis thaliana HOM05D007956 ORTHO05D010152 6.7e-76 289.3 577 31.4
THA.LOC104812478 Tarenaya hassleriana HOM05D007956 ORTHO05D010152 4.3e-75 286.6 582 35.1
BraA01t01197Z Brassica rapa HOM05D007956 ORTHO05D010152 1.3e-74 285.0 587 31.3
CARHR227750 Cardamine hirsuta HOM05D007956 ORTHO05D010152 1.8e-73 281.2 586 31.6
Eucgr.E04115 Eucalyptus grandis HOM05D007956 ORTHO05D010152 1.8e-73 281.2 517 47.2
Sp7g19250 Schrenkiella parvula HOM05D007956 ORTHO05D010152 4.0e-73 280.0 577 30.2
DCAR_008134 Daucus carota HOM05D007956 ORTHO05D010152 6.9e-73 279.3 368 54.6
A01p12520 Brassica napus HOM05D007956 ORTHO05D010152 2.0e-72 277.7 587 30.3
BcaC09g51250 Brassica carinata HOM05D007956 ORTHO05D010152 1.3e-71 275.0 586 30.9
C01p15110 Brassica napus HOM05D007956 ORTHO05D010152 1.3e-71 275.0 586 30.9
BolC1t01460H Brassica oleracea HOM05D007956 ORTHO05D010152 1.3e-71 275.0 586 30.9
Aa31LG6G3180 Aethionema arabicum HOM05D007956 ORTHO05D010152 3.2e-70 270.4 573 46.2
Ah.09g235260 Amaranthus hybridus HOM05D007956 ORTHO05D010152 3.3e-67 260.4 413 35.6
FvH4_3g02620 Fragaria vesca HOM05D007956 ORTHO05D010152 7.4e-67 259.2 406 59.4
Haze_06747 Corylus avellana HOM05D007956 ORTHO05D010152 3.7e-66 256.9 815 36.9
Nn1g07048 Nelumbo nucifera HOM05D007956 ORTHO05D010152 4.8e-66 256.5 378 44.4
FAN21G4014 Fragaria x ananassa HOM05D007956 ORTHO05D010152 2.4e-65 254.2 406 58.4
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 1.9e-62 244.6 180 66.1
Gohir.D05G171300 Gossypium hirsutum HOM05D007956 ORTHO05D010152 3.5e-61 240.4 360 36.9
AUR62022001 Chenopodium quinoa HOM05D007956 ORTHO05D010152 4.1e-57 226.9 413 36.1
Gohir.A05G168200 Gossypium hirsutum HOM05D007956 ORTHO05D010152 1.0e-55 222.2 340 37.1
Atru.chr10.2152 Acer truncatum HOM05D007956 ORTHO05D010152 1.8e-52 211.5 328 50.0
Eucgr.L03252 Eucalyptus grandis HOM05D007956 ORTHO05D010152 1.2e-45 188.7 303 38.0
Aqoxy1G03672 Aquilegia oxysepala HOM05D007956 ORTHO05D010152 6.5e-39 166.4 396 50.0
HPP92_010087 Vanilla planifolia HOM05D007956 ORTHO05D010152 8.0e-29 132.9 342 26.6
ATR0697G148 Amborella trichopoda HOM05D007956 ORTHO05D010152 1.2e-24 119.0 252 40.9
CDE05G3624 Ceratophyllum demersum HOM05D007956 ORTHO05D010152 3.8e-23 114.0 147 40.1
ATR0751G204 Amborella trichopoda HOM05D007956 ORTHO05D010152 9.4e-22 109.4 253 40.7
QL05p074780 Quercus lobata HOM05D000013 ORTHO05D000011 7.5e-19 99.8 200 31.0
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 9.8e-11 72.8 347 20.7
CARHR058230 Cardamine hirsuta HOM05D007291 ORTHO05D009038 8.3e-10 69.7 291 22.7
SEGI_00853 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.1e-09 69.3 235 25.1
Haze_06748 Corylus avellana HOM05D007956 ORTHO05D010152 1.4e-09 68.9 51 64.7
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.2e-08 65.9 279 22.6
TAR624G0359 Trochodendron aralioides HOM05D007956 ORTHO05D010152 1.6e-08 65.5 71 46.5
ClCG06G012850 Citrullus lanatus HOM05D006740 ORTHO05D008571 2.7e-08 64.7 140 30.7
TPR.G37863 Trifolium pratense HOM05D006740 ORTHO05D008571 2.7e-08 64.7 146 28.8
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 3.5e-08 64.3 300 19.7
Cpa.g.sc12.262 Carica papaya HOM05D006740 ORTHO05D008571 4.5e-08 63.9 144 28.5
ATR0048G002 Amborella trichopoda HOM05D006740 ORTHO05D008571 5.9e-08 63.5 143 28.0
Psat5g195760 Pisum sativum HOM05D006888 ORTHO05D008371 5.9e-08 63.5 286 23.8
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 1.7e-07 62.0 235 23.8
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 2.3e-07 61.6 239 26.4
Lj4g0004954 Lotus japonicus HOM05D006740 ORTHO05D008571 2.9e-07 61.2 143 26.6
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 3.9e-07 60.8 253 21.7
CARHR194060 Cardamine hirsuta HOM05D007340 ORTHO05D008979 5.0e-07 60.5 306 19.9
Nn1g03517 Nelumbo nucifera HOM05D002890 ORTHO05D009847 5.0e-07 60.5 273 22.0
CiPaw.09G174800 Carya illinoinensis HOM05D006740 ORTHO05D008571 6.6e-07 60.1 147 27.9
CsaV3_1G029410 Cucumis sativus L. HOM05D006740 ORTHO05D008571 6.6e-07 60.1 140 28.6
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 8.6e-07 59.7 366 21.3
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 8.6e-07 59.7 261 23.4
Lalb_Chr07g0187591 Lupinus albus HOM05D006740 ORTHO05D008571 1.1e-06 59.3 142 26.8
PSO675G3058 Papaver somniferum HOM05D006740 ORTHO05D008571 1.1e-06 59.3 140 29.3
Ca_02412_v3 Cicer arietinum L. HOM05D006740 ORTHO05D008571 1.5e-06 58.9 146 26.0
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 1.9e-06 58.5 191 25.1
Ciclev10033858m.g Citrus clementina HOM05D005764 ORTHO05D006600 1.9e-06 58.5 189 26.5
Oeu005567.3 Olea europaea HOM05D005764 ORTHO05D006600 1.9e-06 58.5 258 21.7
PSO384G5041 Papaver somniferum HOM05D000424 ORTHO05D000355 1.9e-06 58.5 79 39.2
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 2.5e-06 58.2 217 25.3
PSO541G6013 Papaver somniferum HOM05D006740 ORTHO05D008571 2.5e-06 58.2 140 29.3
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 3.3e-06 57.8 259 21.2
Aqoxy3G01152 Aquilegia oxysepala HOM05D007358 ORTHO05D009117 4.3e-06 57.4 198 23.2
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 4.3e-06 57.4 177 23.2
Aqoxy3G00841 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 5.6e-06 57.0 78 38.5
A08p01630 Brassica napus HOM05D002453 ORTHO05D008746 5.6e-06 57.0 156 26.3
BraA08t32216Z Brassica rapa HOM05D002453 ORTHO05D008746 5.6e-06 57.0 156 26.3
ClCG09G017910 Citrullus lanatus HOM05D007675 ORTHO05D009699 5.6e-06 57.0 85 35.3
Medtr2g437460 Medicago truncatula HOM05D006740 ORTHO05D008571 5.6e-06 57.0 146 26.7
Sed0019079 Sechium edule HOM05D006740 ORTHO05D008571 5.6e-06 57.0 140 28.6
Sed0023429 Sechium edule HOM05D000424 ORTHO05D000355 5.6e-06 57.0 78 37.2
CARHR132360 Cardamine hirsuta HOM05D006740 ORTHO05D008571 7.3e-06 56.6 147 27.9
MELO3C010658.2 Cucumis melo HOM05D000424 ORTHO05D000355 7.3e-06 56.6 78 34.6
Sed0004940 Sechium edule HOM05D006740 ORTHO05D008571 7.3e-06 56.6 140 27.9
Gorai.009G366400 Gossypium raimondii HOM05D007291 ORTHO05D009038 9.5e-06 56.2 255 23.5
Nn8g41093 Nelumbo nucifera HOM05D008483 ORTHO05D010726 9.5e-06 56.2 245 21.2
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 9.5e-06 56.2 217 24.4
THA.LOC104810436 Tarenaya hassleriana HOM05D002453 ORTHO05D008746 9.5e-06 56.2 80 40.0


User provided reference genes

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