Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P1217T36 Lonicera japonica HOM05D008183 ORTHO05D007254 2.9e-97 358.6 185 100.0
Lj3P1014T21 Lonicera japonica HOM05D008183 ORTHO05D007254 2.1e-68 262.7 166 83.1
Lj8P205T42 Lonicera japonica HOM05D008183 ORTHO05D007254 1.3e-54 216.9 146 80.8
Lj8P115T49 Lonicera japonica HOM05D008183 ORTHO05D007254 3.7e-36 155.6 108 79.6
Lj2C65T12 Lonicera japonica HOM05D008183 ORTHO05D007254 2.9e-25 119.4 168 39.3
Lju110C5T8 Lonicera japonica HOM05D008183 ORTHO05D007254 2.5e-24 116.3 153 42.5
Lj1P1006T30 Lonicera japonica HOM05D008183 ORTHO05D007254 4.7e-23 112.1 128 45.3
Lj2C40G9 Lonicera japonica HOM05D008183 ORTHO05D007254 8.0e-23 111.3 154 38.3
CSS0007562 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.3e-22 109.8 143 40.6
Lj7P396T52 Lonicera japonica HOM05D008183 ORTHO05D007254 4.0e-22 109.0 105 48.6
Lj1P289T15 Lonicera japonica HOM05D008183 ORTHO05D007254 2.0e-21 106.7 139 39.6
Lj3P854T34 Lonicera japonica HOM05D008183 ORTHO05D007254 1.7e-20 103.6 115 49.6
CSS0012014 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 8.2e-20 101.3 140 37.9
CSS0013917 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.8e-19 100.1 140 38.6
Lj4C77T3 Lonicera japonica HOM05D008183 ORTHO05D007254 4.1e-19 99.0 123 40.7
CSS0027326 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 5.3e-19 98.6 134 38.8
Lj1P880T38 Lonicera japonica HOM05D008183 ORTHO05D007254 2.9e-17 92.8 105 41.0
CSS0039886 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 6.5e-17 91.7 145 35.2
Rhsim01G0167200 Rhododendron simsii HOM05D000003 ORTHO05D007254 8.5e-17 91.3 176 31.8
Rhsim07G0138700 Rhododendron simsii HOM05D000003 ORTHO05D000004 8.5e-17 91.3 170 34.7
Lj9P645T45 Lonicera japonica HOM05D008183 ORTHO05D007254 4.2e-16 89.0 100 49.0
CSS0000077 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 5.5e-16 88.6 140 35.7
CSS0000654 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.1e-15 86.7 138 35.5
CSS0036610 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D007254 2.7e-15 86.3 100 44.0
Lj9P695T39 Lonicera japonica HOM05D008183 ORTHO05D007254 3.6e-15 85.9 87 47.1
Rhsim03G0134300 Rhododendron simsii HOM05D008183 ORTHO05D007254 8.0e-15 84.7 131 32.8
Lj2P257T35 Lonicera japonica HOM05D008183 ORTHO05D007254 1.4e-14 84.0 97 43.3
vmacro20413 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 1.4e-14 84.0 119 39.5
Rhsim01G0155500 Rhododendron simsii HOM05D000003 ORTHO05D007254 1.8e-14 83.6 140 33.6
Lj3P354T13 Lonicera japonica HOM05D008183 ORTHO05D007254 4.0e-14 82.4 90 44.4
Rhsim06G0103400 Rhododendron simsii HOM05D000003 ORTHO05D000004 4.0e-14 82.4 140 33.6
CSS0024246 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 5.2e-14 82.0 144 31.2
Rhsim13G0004500 Rhododendron simsii HOM05D008183 ORTHO05D007254 5.2e-14 82.0 140 33.6
Rhsim11G0009800 Rhododendron simsii HOM05D000003 ORTHO05D000004 1.2e-13 80.9 142 32.4
CSS0013490 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.6e-13 79.7 144 31.9
Rhsim03G0084200 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.6e-13 79.7 140 32.9
Lj5P293T5 Lonicera japonica HOM05D008183 ORTHO05D007254 4.4e-13 79.0 88 43.2
Rhsim01G0165600 Rhododendron simsii HOM05D000003 ORTHO05D007254 4.4e-13 79.0 142 33.1
vmacro21152 Vaccinium macrocarpon HOM05D003664 ORTHO05D003077 5.7e-13 78.6 124 34.7
Lj5A712T32 Lonicera japonica HOM05D003297 ORTHO05D004027 7.5e-13 78.2 80 48.8
Rhsim01G0063000 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.3e-12 77.4 140 33.6
CSS0041363 Camellia sinensis var. sinensis HOM05D001340 ORTHO05D002318 1.7e-12 77.0 117 35.0
Rhsim04G0100600 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.2e-12 76.6 116 34.5
CSS0037115 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.8e-12 76.3 106 40.6
CSS0043494 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 3.7e-12 75.9 124 36.3
Rhsim02G0203700 Rhododendron simsii HOM05D000001 ORTHO05D009494 3.7e-12 75.9 116 35.3
Lj3A1052T27 Lonicera japonica HOM05D008183 ORTHO05D007254 4.8e-12 75.5 132 37.9
vmacro23070 Vaccinium macrocarpon HOM05D000626 ORTHO05D007254 6.3e-12 75.1 115 38.3
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 1.1e-11 74.3 185 26.5
CSS0022949 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.8e-11 73.6 156 33.3
Lj3P938T21 Lonicera japonica HOM05D008183 ORTHO05D007254 1.8e-11 73.6 76 50.0
RhsimUnG0047500 Rhododendron simsii HOM05D008183 ORTHO05D007254 4.1e-11 72.4 157 31.2
Rhsim08G0082000 Rhododendron simsii HOM05D000003 ORTHO05D000006 1.2e-10 70.9 147 31.3
Rhsim03G0019700 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.6e-10 70.5 157 30.6
Rhsim03G0019800 Rhododendron simsii HOM05D008183 ORTHO05D007254 1.6e-10 70.5 157 30.6
Rhsim12G0010300 Rhododendron simsii HOM05D008183 ORTHO05D007254 2.0e-10 70.1 117 33.3
CSS0027596 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.7e-10 69.7 123 34.1
Lj7C433G3 Lonicera japonica HOM05D000005 ORTHO05D007073 4.5e-10 68.9 128 35.9
Lju225C5T9 Lonicera japonica HOM05D008183 ORTHO05D007254 1.0e-09 67.8 84 48.8
CSS0035557 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000004 1.3e-09 67.4 77 41.6
CSS0023048 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.7e-09 67.0 140 32.9
Lj5g0011892 Lotus japonicus HOM05D000003 ORTHO05D007254 2.3e-09 66.6 143 30.1
COL.COLO4_15583 Corchorus olitorius HOM05D000003 ORTHO05D000004 3.8e-09 65.9 143 32.9
CSS0016507 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 8.6e-09 64.7 140 32.9
CSS0034453 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 8.6e-09 64.7 134 30.6
CSS0048899 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 1.5e-08 63.9 166 30.1
CSS0014976 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 4.2e-08 62.4 127 28.3
COL.COLO4_35386 Corchorus olitorius HOM05D008133 ORTHO05D009449 4.2e-08 62.4 164 27.4
vmacro13033 Vaccinium macrocarpon HOM05D000076 ORTHO05D007254 4.2e-08 62.4 130 33.8
COL.COLO4_07023 Corchorus olitorius HOM05D000003 ORTHO05D000004 5.5e-08 62.0 143 32.2
CSS0048373 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 7.2e-08 61.6 155 31.0
Rhsim03G0017000 Rhododendron simsii HOM05D008183 ORTHO05D007254 7.2e-08 61.6 105 33.3
RcHm_v2.0_Chr4g0404581 Rosa chinensis HOM05D000003 ORTHO05D000022 7.2e-08 61.6 133 30.8
Rhsim03G0007500 Rhododendron simsii HOM05D033359 ORTHO05D340347 9.5e-08 61.2 100 36.0
Lj2g0015378 Lotus japonicus HOM05D000003 ORTHO05D000925 1.2e-07 60.8 134 30.6
Atru.chr2.49 Acer truncatum HOM05D000003 ORTHO05D000167 1.6e-07 60.5 161 29.8
COL.COLO4_17181 Corchorus olitorius HOM05D008183 ORTHO05D007254 1.6e-07 60.5 120 35.8
Sc19g0003070 Simmondsia chinensis HOM05D013236 ORTHO05D007254 1.6e-07 60.5 75 48.0
CSS0001686 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.1e-07 60.1 127 33.9
CSS0019282 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.1e-07 60.1 94 35.1
Lj2g0023475 Lotus japonicus HOM05D000003 ORTHO05D007254 2.1e-07 60.1 134 32.8
Lj3C625T2 Lonicera japonica HOM05D008183 ORTHO05D007254 2.8e-07 59.7 79 40.5
vmacro21511 Vaccinium macrocarpon HOM05D000235 ORTHO05D000147 2.8e-07 59.7 117 32.5
Lj1g0015022 Lotus japonicus HOM05D000003 ORTHO05D000167 3.6e-07 59.3 134 28.4
CSS0036848 Camellia sinensis var. sinensis HOM05D021266 ORTHO05D007254 4.7e-07 58.9 90 36.7
Lj1g0005496 Lotus japonicus HOM05D000003 ORTHO05D007254 4.7e-07 58.9 143 30.8
LjContig00408g0023232 Lotus japonicus HOM05D000003 ORTHO05D000004 4.7e-07 58.9 122 34.4
Sc05g0006150 Simmondsia chinensis HOM05D013236 ORTHO05D007254 1.0e-06 57.8 124 32.3
Atru.chr13.1628 Acer truncatum HOM05D000003 ORTHO05D000167 1.4e-06 57.4 142 28.9
Lj1g0000509 Lotus japonicus HOM05D000003 ORTHO05D000004 1.4e-06 57.4 137 26.3
RcHm_v2.0_Chr1g0356971 Rosa chinensis HOM05D000003 ORTHO05D000022 1.4e-06 57.4 104 30.8
arahy.Tifrunner.gnm1.ann1.MHV6FT Arachis hypogaea HOM05D027442 ORTHO05D007254 2.3e-06 56.6 143 26.6
CSS0035533 Camellia sinensis var. sinensis HOM05D008183 ORTHO05D007254 2.3e-06 56.6 128 30.5
COL.COLO4_28797 Corchorus olitorius HOM05D000003 ORTHO05D000004 2.3e-06 56.6 170 29.4
vmacro01918 Vaccinium macrocarpon HOM05D008183 ORTHO05D007254 2.3e-06 56.6 81 42.0
Atru.chr9.1010 Acer truncatum HOM05D000003 ORTHO05D000167 4.0e-06 55.8 105 33.3
FvH4_6g16961 Fragaria vesca HOM05D000003 ORTHO05D000022 4.0e-06 55.8 120 30.8
FvH4_3g24611 Fragaria vesca HOM05D000003 ORTHO05D000004 5.2e-06 55.5 113 32.7
Lj3g0000535 Lotus japonicus HOM05D000003 ORTHO05D007254 5.2e-06 55.5 143 28.7
Dinv06602 Davidia involucrata HOM05D008183 ORTHO05D183152 6.8e-06 55.1 65 40.0
FvH4_3g14411 Fragaria vesca HOM05D000003 ORTHO05D000022 6.8e-06 55.1 101 32.7
Gorai.004G068400 Gossypium raimondii HOM05D008183 ORTHO05D007254 6.8e-06 55.1 133 32.3
FvH4_1g29601 Fragaria vesca HOM05D000003 ORTHO05D000004 8.8e-06 54.7 142 24.6


User provided reference genes

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