Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P1174T21 Lonicera japonica HOM05D000079 ORTHO05D048420 4.8e-41 170.6 80 100.0
Lj8P536T17 Lonicera japonica HOM05D000079 ORTHO05D048420 1.3e-35 152.5 80 90.0
Lj2A295G67 Lonicera japonica HOM05D000079 ORTHO05D009260 2.0e-31 138.7 71 91.5
TAR626G0966 Trochodendron aralioides HOM05D000079 ORTHO05D009260 2.4e-24 115.2 71 73.2
Rhsim13G0185200 Rhododendron simsii HOM05D000079 ORTHO05D009260 2.6e-23 111.7 71 69.0
Hma1.2p1_0994F.1_g245560 Hydrangea macrophylla HOM05D000079 ORTHO05D009260 3.4e-23 111.3 71 71.8
vmacro03881 Vaccinium macrocarpon HOM05D000079 ORTHO05D009260 4.5e-23 110.9 71 69.0
Lalb_Chr20g0121341 Lupinus albus HOM05D000079 ORTHO05D009260 5.9e-23 110.5 71 69.0
GSVIVG01021170001 Vitis vinifera HOM05D000079 ORTHO05D009260 5.9e-23 110.5 71 70.4
PSO782G1411 Papaver somniferum HOM05D000079 ORTHO05D009260 1.0e-22 109.8 71 69.0
Nn1g09027 Nelumbo nucifera HOM05D000079 ORTHO05D009260 1.7e-22 109.0 71 67.6
Ca_00417_v3 Cicer arietinum L. HOM05D000079 ORTHO05D009260 2.2e-22 108.6 71 67.6
Gohir.D06G134550 Gossypium hirsutum HOM05D000079 ORTHO05D009260 2.2e-22 108.6 71 67.6
Gohir.D07G236300 Gossypium hirsutum HOM05D000079 ORTHO05D009260 2.2e-22 108.6 71 67.6
Gorai.001G272400 Gossypium raimondii HOM05D000079 ORTHO05D009260 2.2e-22 108.6 71 67.6
Gorai.010G156300 Gossypium raimondii HOM05D000079 ORTHO05D009260 2.2e-22 108.6 71 67.6
TPR.G11680 Trifolium pratense HOM05D000079 ORTHO05D009260 2.9e-22 108.2 71 69.0
Gohir.A06G130100 Gossypium hirsutum HOM05D000079 ORTHO05D009260 3.8e-22 107.8 71 67.6
QL01p001225 Quercus lobata HOM05D000079 ORTHO05D009260 3.8e-22 107.8 71 70.4
Lj6g0010385 Lotus japonicus HOM05D000079 ORTHO05D009260 5.0e-22 107.5 71 66.2
QL05p044191 Quercus lobata HOM05D000079 ORTHO05D009260 5.0e-22 107.5 71 70.4
CSS0023583 Camellia sinensis var. sinensis HOM05D000079 ORTHO05D009260 6.5e-22 107.1 71 66.2
Medtr2g015430 Medicago truncatula HOM05D000079 ORTHO05D009260 6.5e-22 107.1 71 67.6
Thecc.06G175700 Theobroma cacao HOM05D000079 ORTHO05D009260 6.5e-22 107.1 71 67.6
Duzib235G0533 Durio zibethinus HOM05D000079 ORTHO05D009260 8.5e-22 106.7 71 66.2
TWI38G1289 Tripterygium wilfordii HOM05D000079 ORTHO05D009260 8.5e-22 106.7 71 67.6
Actinidia05676 Actinidia chinensis HOM05D000079 ORTHO05D009260 1.1e-21 106.3 71 67.6
Manes.16G035600 Manihot esculenta HOM05D000079 ORTHO05D009260 1.1e-21 106.3 71 69.0
Aqoxy4G00487 Aquilegia oxysepala HOM05D000079 ORTHO05D009260 1.4e-21 105.9 71 66.2
arahy.Tifrunner.gnm1.ann1.84G6ZA Arachis hypogaea HOM05D000079 ORTHO05D009260 1.4e-21 105.9 71 64.8
CiPaw.09G067300 Carya illinoinensis HOM05D000079 ORTHO05D009260 1.9e-21 105.5 71 67.6
AUR62036554 Chenopodium quinoa HOM05D000079 ORTHO05D009260 1.9e-21 105.5 71 69.0
DCAR_028025 Daucus carota HOM05D000079 ORTHO05D009260 1.9e-21 105.5 71 67.6
Potri.004G053500 Populus trichocarpa HOM05D000079 ORTHO05D009260 1.9e-21 105.5 71 67.6
Ciclev10015309m.g Citrus clementina HOM05D000079 ORTHO05D009260 3.2e-21 104.8 71 66.2
Aa31LG6G11130 Aethionema arabicum HOM05D000079 ORTHO05D009260 4.2e-21 104.4 71 62.0
AL1G42300 Arabidopsis lyrata HOM05D000079 ORTHO05D009260 4.2e-21 104.4 71 63.4
CARHR028130 Cardamine hirsuta HOM05D000079 ORTHO05D009260 4.2e-21 104.4 71 63.4
COL.COLO4_31348 Corchorus olitorius HOM05D000079 ORTHO05D009260 4.2e-21 104.4 71 64.8
Haze_06276 Corylus avellana HOM05D000079 ORTHO05D009260 5.5e-21 104.0 71 66.2
Sp1g24880 Schrenkiella parvula HOM05D000079 ORTHO05D009260 5.5e-21 104.0 71 64.8
arahy.Tifrunner.gnm1.ann1.AMV68J Arachis hypogaea HOM05D000079 ORTHO05D009260 7.2e-21 103.6 71 64.8
Lsat_1_v5_gn_4_50380 Lactuca sativa HOM05D000079 ORTHO05D009260 7.2e-21 103.6 71 66.2
Psat1g200120 Pisum sativum HOM05D000079 ORTHO05D009260 7.2e-21 103.6 71 64.8
EL10Ac8g20494 Beta vulgaris HOM05D000079 ORTHO05D009260 9.4e-21 103.2 71 69.0
BraA09t39257Z Brassica rapa HOM05D000079 ORTHO05D009260 9.4e-21 103.2 71 63.4
Atru.chr10.1728 Acer truncatum HOM05D000079 ORTHO05D009260 1.2e-20 102.8 71 63.4
Ah.14g087320 Amaranthus hybridus HOM05D000079 ORTHO05D009260 1.2e-20 102.8 71 67.6
BcaC05g26909 Brassica carinata HOM05D000079 ORTHO05D009260 1.2e-20 102.8 71 63.4
A09p37470 Brassica napus HOM05D000079 ORTHO05D009260 1.2e-20 102.8 71 64.8
BNapus_Darmor_BZH_scaffold_165p00040 Brassica napus HOM05D000079 ORTHO05D009260 1.2e-20 102.8 71 63.4
C05p27650 Brassica napus HOM05D000079 ORTHO05D009260 1.2e-20 102.8 71 63.4
BolC5t31484H Brassica oleracea HOM05D000079 ORTHO05D009260 1.2e-20 102.8 71 63.4
Carub.0001s2711 Capsella rubella HOM05D000079 ORTHO05D009260 1.2e-20 102.8 71 62.0
ECA234G2362 Erigeron canadensis HOM05D000079 ORTHO05D009260 1.2e-20 102.8 71 62.0
Sabra04G0034900 Salix brachista HOM05D000079 ORTHO05D009260 1.2e-20 102.8 71 66.2
AT1G28680 Arabidopsis thaliana HOM05D000079 ORTHO05D009260 1.6e-20 102.4 71 62.0
BcaB07g32478 Brassica carinata HOM05D000079 ORTHO05D009260 1.6e-20 102.4 71 63.4
Thhalv10007612m.g Eutrema salsugineum HOM05D000079 ORTHO05D009260 2.1e-20 102.1 71 63.4
Prupe.4G057600 Prunus persica HOM05D000079 ORTHO05D009260 2.1e-20 102.1 71 66.2
Cfa000574 Carpinus fangiana HOM05D000079 ORTHO05D009260 2.7e-20 101.7 71 64.8
VMungo0540G0695 Vigna mungo HOM05D000079 ORTHO05D009260 3.6e-20 101.3 71 62.0
MBI06_g31400_MAGBIO Magnolia biondii HOM05D000079 ORTHO05D009260 4.7e-20 100.9 71 60.6
Oeu043317.1 Olea europaea HOM05D000079 ORTHO05D009260 4.7e-20 100.9 71 64.8
Glyma.13G232400 Glycine max HOM05D000079 ORTHO05D009260 6.1e-20 100.5 71 62.0
Eucgr.D00550 Eucalyptus grandis HOM05D000079 ORTHO05D009260 7.9e-20 100.1 71 60.6
CANSAT01G1894 Cannabis sativa HOM05D000079 ORTHO05D009260 1.0e-19 99.8 71 63.4
Eucgr.D00546 Eucalyptus grandis HOM05D000079 ORTHO05D009260 1.0e-19 99.8 71 60.6
RcHm_v2.0_Chr5g0010101 Rosa chinensis HOM05D000079 ORTHO05D009260 1.0e-19 99.8 71 63.4
HanXRQChr11g0327131 Helianthus annuus HOM05D000079 ORTHO05D009260 1.4e-19 99.4 71 59.2
Phvul.006G178300 Phaseolus vulgaris HOM05D000079 ORTHO05D009260 1.8e-19 99.0 71 59.2
THA.LOC104814241 Tarenaya hassleriana HOM05D000079 ORTHO05D009260 3.0e-19 98.2 71 60.6
Nitab4.5_0007486g0010 Nicotiana tabacum HOM05D000079 ORTHO05D009260 3.9e-19 97.8 71 64.8
Cc01_g02660 Coffea canephora HOM05D000079 ORTHO05D009260 5.1e-19 97.4 71 64.8
FvH4_1g16270 Fragaria vesca HOM05D000079 ORTHO05D009260 6.7e-19 97.1 71 60.6
FAN19G1829 Fragaria x ananassa HOM05D000079 ORTHO05D009260 6.7e-19 97.1 71 60.6
FAN21G2629 Fragaria x ananassa HOM05D000079 ORTHO05D009260 6.7e-19 97.1 71 60.6
FvH4_3g08120 Fragaria vesca HOM05D000079 ORTHO05D009260 1.1e-18 96.3 71 60.6
FAN11G3968 Fragaria x ananassa HOM05D000079 ORTHO05D009260 1.1e-18 96.3 71 60.6
FAN16G2634 Fragaria x ananassa HOM05D000079 ORTHO05D009260 1.1e-18 96.3 71 60.6
Peaxi162Scf00062g02314 Petunia axillaris HOM05D000079 ORTHO05D009260 1.1e-18 96.3 71 62.0
Peaxi162Scf00100g00017 Petunia axillaris HOM05D000079 ORTHO05D009260 2.6e-18 95.1 71 64.8
Sopen04g033300 Solanum pennellii HOM05D000079 ORTHO05D009260 5.7e-18 94.0 71 60.6
Nitab4.5_0000827g0030 Nicotiana tabacum HOM05D000079 ORTHO05D009260 7.4e-18 93.6 71 60.6
MD10G1283900 Malus domestica HOM05D000079 ORTHO05D009260 9.7e-18 93.2 71 60.6
Solyc04g079720.4 Solanum lycopersicum HOM05D000079 ORTHO05D009260 9.7e-18 93.2 71 59.2
MELO3C007232.2 Cucumis melo HOM05D000079 ORTHO05D009260 1.7e-17 92.4 71 59.2
Migut.D02544 Erythranthe guttata HOM05D000079 ORTHO05D009260 2.2e-17 92.0 71 56.3
PGSC0003DMG400004283 Solanum tuberosum HOM05D000079 ORTHO05D009260 2.2e-17 92.0 71 59.2
CDE09G0633 Ceratophyllum demersum HOM05D000079 ORTHO05D009260 2.8e-17 91.7 71 56.3
Nitab4.5_0001059g0120 Nicotiana tabacum HOM05D000079 ORTHO05D009260 3.7e-17 91.3 71 63.4
Solyc01g005900.2 Solanum lycopersicum HOM05D000907 ORTHO05D009260 8.2e-17 90.1 71 59.2
Sopen01g001900 Solanum pennellii HOM05D000079 ORTHO05D009260 8.2e-17 90.1 71 59.2
HPP92_020026 Vanilla planifolia HOM05D000079 ORTHO05D009260 8.2e-17 90.1 71 59.2
MSTRG.18869 Avicennia marina HOM05D000079 ORTHO05D009260 1.1e-16 89.7 71 54.9
ClCG01G023540 Citrullus lanatus HOM05D000079 ORTHO05D009260 2.4e-16 88.6 71 56.3
CsaV3_6G050670 Cucumis sativus L. HOM05D000079 ORTHO05D009260 3.1e-16 88.2 71 56.3
Sed0019343 Sechium edule HOM05D000079 ORTHO05D009260 1.2e-15 86.3 71 54.9
Cpa.g.sc7.15 Carica papaya HOM05D000079 ORTHO05D009260 5.9e-15 84.0 55 69.1
SalBow6G0223 Salvia bowleyana HOM05D000079 ORTHO05D009260 1.0e-14 83.2 71 53.5
unitig_746.g26631 Utricularia gibba HOM05D000079 ORTHO05D009260 2.2e-14 82.0 71 52.1
Os06g0155500 Oryza sativa ssp. japonica HOM05D000079 ORTHO05D009260 2.5e-13 78.6 71 47.9
Zm00001eb376590 Zea mays HOM05D000079 ORTHO05D009260 3.0e-11 71.6 71 47.9
PGR004G0540 Punica granatum HOM05D000079 ORTHO05D009260 1.5e-10 69.3 76 46.1
FAN23G0250 Fragaria x ananassa HOM05D000079 ORTHO05D009260 2.8e-09 65.1 59 54.2


User provided reference genes

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