Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 8.4e-196 686.8 337 100.0
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 4.5e-165 584.7 335 83.0
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 6.5e-164 580.9 328 83.5
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 3.2e-163 578.6 328 82.9
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 2.2e-159 565.8 335 79.4
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 2.8e-159 565.5 337 78.9
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 2.8e-159 565.5 328 81.1
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 4.8e-159 564.7 335 79.1
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.4e-158 563.1 333 80.5
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 9.0e-158 560.5 335 77.3
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 6.5e-156 554.3 337 78.3
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 3.2e-155 552.0 337 76.9
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 7.2e-155 550.8 337 78.0
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 2.7e-154 548.9 337 76.6
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 3.6e-154 548.5 337 77.2
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 4.6e-154 548.1 337 77.7
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 6.1e-154 547.7 335 77.9
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 1.0e-153 547.0 337 76.6
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 2.3e-153 545.8 337 77.4
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 3.0e-153 545.4 329 77.5
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 3.9e-153 545.0 337 76.0
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 3.9e-153 545.0 337 76.3
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 8.8e-153 543.9 337 78.0
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 1.5e-152 543.1 337 77.7
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 2.5e-152 542.3 337 73.9
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 5.7e-152 541.2 337 77.4
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 7.4e-152 540.8 337 75.1
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 1.7e-151 539.7 337 77.2
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 3.7e-151 538.5 337 76.6
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.1e-150 537.0 337 75.7
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.8e-150 536.2 335 76.7
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 4.1e-150 535.0 336 75.0
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 5.3e-150 534.6 339 74.6
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 1.2e-149 533.5 337 75.7
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 1.5e-149 533.1 338 74.3
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 2.6e-149 532.3 335 75.5
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 5.9e-149 531.2 337 73.9
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.0e-148 530.4 337 74.5
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 1.3e-148 530.0 337 74.8
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.7e-148 529.6 337 74.5
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 2.9e-148 528.9 337 73.3
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.9e-148 528.9 337 75.7
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 6.5e-148 527.7 337 74.5
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 8.5e-148 527.3 339 73.7
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 1.9e-147 526.2 337 73.9
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.9e-147 526.2 337 74.2
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 2.5e-147 525.8 337 72.1
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 2.5e-147 525.8 337 73.9
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.2e-147 525.4 328 75.6
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 3.2e-147 525.4 339 73.2
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 4.2e-147 525.0 337 73.9
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 4.2e-147 525.0 337 73.9
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 4.2e-147 525.0 336 73.2
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 1.2e-146 523.5 337 71.2
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 2.1e-146 522.7 335 74.0
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 2.1e-146 522.7 337 74.2
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 2.7e-146 522.3 337 73.9
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 3.6e-146 521.9 337 72.7
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 3.6e-146 521.9 337 73.0
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 4.7e-146 521.5 337 75.1
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 1.4e-145 520.0 334 73.4
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 1.4e-145 520.0 337 73.6
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 2.3e-145 519.2 325 75.7
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 6.7e-145 517.7 337 72.7
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 8.8e-145 517.3 334 74.3
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 1.3e-143 513.5 337 72.4
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 1.7e-143 513.1 338 72.5
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.7e-143 513.1 333 75.1
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.4e-142 509.2 338 71.6
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 5.3e-142 508.1 328 72.6
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 1.2e-141 506.9 331 71.9
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 2.6e-141 505.8 336 71.1
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 4.5e-141 505.0 338 71.6
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 7.7e-141 504.2 328 72.9
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 1.0e-140 503.8 334 71.6
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 1.0e-140 503.8 312 75.3
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 1.7e-140 503.1 335 73.1
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 2.2e-140 502.7 338 71.9
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 8.5e-140 500.7 341 69.5
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 3.2e-139 498.8 334 70.7
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 9.4e-139 497.3 337 69.1
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 2.7e-138 495.7 328 71.0
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 6.1e-138 494.6 339 69.0
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 8.0e-138 494.2 328 71.0
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.4e-137 493.4 338 69.5
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 6.7e-137 491.1 344 69.8
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.5e-136 490.0 337 69.4
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 2.0e-136 489.6 329 70.5
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 5.7e-136 488.0 333 70.3
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 1.3e-135 486.9 336 70.2
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 5.3e-134 481.5 337 67.7
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 1.2e-133 480.3 334 70.4
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 7.7e-133 477.6 329 68.7
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 2.7e-130 469.2 328 70.4
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 4.7e-130 468.4 337 68.5
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 1.0e-129 467.2 340 64.7
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 1.8e-129 466.5 337 66.8
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 4.0e-129 465.3 337 67.4
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 4.4e-128 461.8 329 64.1
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 1.2e-125 453.8 328 65.5
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 5.9e-125 451.4 340 62.6
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 8.5e-124 447.6 329 64.4
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 1.1e-123 447.2 329 64.1
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 1.5e-123 446.8 334 63.2
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 9.4e-123 444.1 322 68.0
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 2.3e-121 439.5 289 69.6
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 4.0e-121 438.7 328 64.6
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 2.6e-120 436.0 337 61.1
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 2.2e-119 433.0 337 60.5
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 3.7e-119 432.2 261 79.3
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 1.4e-118 430.3 377 57.8
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 2.4e-118 429.5 289 71.3
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 4.1e-118 428.7 330 61.5
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 1.7e-116 423.3 330 61.8
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 5.0e-116 421.8 333 61.6
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.6e-114 416.8 330 61.5
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.6e-114 416.8 334 62.9
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 2.1e-114 416.4 316 63.0
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 4.1e-110 402.1 263 71.1
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 1.2e-93 347.4 385 49.9
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 3.9e-92 342.4 340 52.1
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 1.5e-91 340.5 349 54.2
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 6.4e-87 325.1 217 73.7
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 1.4e-86 323.9 334 52.1
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 6.0e-85 318.5 274 56.9
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 6.0e-85 318.5 209 72.7
Medtr2g048690 Medicago truncatula HOM05D004754 ORTHO05D005566 1.0e-84 317.8 315 54.0
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 3.3e-83 312.8 351 47.6
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 1.2e-80 304.3 278 57.6
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 5.8e-80 302.0 405 42.2
Haze_09496 Corylus avellana HOM05D004754 ORTHO05D005566 2.5e-75 286.6 250 58.0
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.3e-74 284.3 191 67.5
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 1.1e-59 234.6 333 39.6
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 7.4e-59 231.9 184 60.9
TPR.G5080 Trifolium pratense HOM05D004754 ORTHO05D005566 5.8e-56 222.2 155 67.7
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 8.7e-52 208.4 373 34.9
Migut.N02733 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.4e-49 201.1 144 65.3
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 6.9e-49 198.7 337 38.9
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 5.0e-47 192.6 156 62.2
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 5.5e-46 189.1 134 68.7
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 7.2e-46 188.7 249 43.4
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 3.9e-44 183.0 138 65.2
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 3.9e-44 183.0 138 65.2
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 3.4e-32 143.3 109 65.1
Glyma.02G261300 Glycine max HOM05D004754 ORTHO05D005566 5.5e-30 136.0 89 69.7
Glyma.02G261200 Glycine max HOM05D004754 ORTHO05D005566 1.0e-28 131.7 91 68.1
Medtr8g072370 Medicago truncatula HOM05D004754 ORTHO05D005566 1.5e-27 127.9 152 46.7
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 3.8e-23 113.2 66 83.3
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 8.0e-21 105.5 66 80.3
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 4.0e-20 103.2 414 25.1
HPP92_027351 Vanilla planifolia HOM05D004754 ORTHO05D005566 1.0e-15 88.6 76 51.3
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 4.7e-13 79.7 58 72.4
Potri.017G049500 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.2e-11 75.1 39 84.6
HPP92_027352 Vanilla planifolia HOM05D004754 ORTHO05D005566 7.0e-09 65.9 66 48.5
Potri.006G050600 Populus trichocarpa HOM05D004754 ORTHO05D005566 5.9e-08 62.8 51 64.7
DCAR_004803 Daucus carota HOM05D019807 ORTHO05D005566 8.5e-07 58.9 34 73.5


User provided reference genes

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