Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P1152T38 Lonicera japonica HOM05D006345 ORTHO05D007428 1.5e-22 108.6 53 100.0
arahy.Tifrunner.gnm1.ann1.G9BQRV Arachis hypogaea HOM05D006345 ORTHO05D007428 4.8e-13 77.0 46 71.7
CSS0000171 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 4.8e-13 77.0 46 71.7
CSS0008102 Camellia sinensis var. sinensis HOM05D006345 ORTHO05D007428 4.8e-13 77.0 46 71.7
Ciclev10016345m.g Citrus clementina HOM05D006345 ORTHO05D007428 4.8e-13 77.0 46 73.9
Cc09_g04580 Coffea canephora HOM05D006345 ORTHO05D007428 4.8e-13 77.0 44 77.3
Lsat_1_v5_gn_2_63801 Lactuca sativa HOM05D006345 ORTHO05D007428 4.8e-13 77.0 46 69.6
CiPaw.01G263700 Carya illinoinensis HOM05D006345 ORTHO05D007428 6.2e-13 76.6 46 71.7
Lalb_Chr07g0189941 Lupinus albus HOM05D006345 ORTHO05D007428 8.1e-13 76.3 46 67.4
arahy.Tifrunner.gnm1.ann1.P3RVZQ Arachis hypogaea HOM05D006345 ORTHO05D007428 1.1e-12 75.9 46 69.6
CiPaw.14G048700 Carya illinoinensis HOM05D006345 ORTHO05D007428 1.1e-12 75.9 52 65.4
Duzib212G0272 Durio zibethinus HOM05D006345 ORTHO05D007428 1.1e-12 75.9 46 71.7
Lsat_1_v5_gn_3_103240 Lactuca sativa HOM05D006345 ORTHO05D007428 1.1e-12 75.9 49 65.3
Ca_19950_v3 Cicer arietinum L. HOM05D006345 ORTHO05D007428 1.4e-12 75.5 52 67.3
Nitab4.5_0001925g0110 Nicotiana tabacum HOM05D006345 ORTHO05D007428 1.4e-12 75.5 52 67.3
Oeu017184.1 Olea europaea HOM05D006345 ORTHO05D007428 1.4e-12 75.5 46 69.6
Sed0017834 Sechium edule HOM05D006345 ORTHO05D007428 1.4e-12 75.5 44 72.7
Nitab4.5_0008647g0020 Nicotiana tabacum HOM05D006345 ORTHO05D007428 1.8e-12 75.1 52 65.4
PSO782G3410 Papaver somniferum HOM05D006345 ORTHO05D007428 2.4e-12 74.7 44 75.0
COL.COLO4_13882 Corchorus olitorius HOM05D006345 ORTHO05D007428 3.1e-12 74.3 46 71.7
Lalb_Chr13g0291791 Lupinus albus HOM05D006345 ORTHO05D007428 3.1e-12 74.3 52 63.5
PSO541G0968 Papaver somniferum HOM05D006345 ORTHO05D007428 3.1e-12 74.3 44 75.0
PSO675G7514 Papaver somniferum HOM05D006345 ORTHO05D007428 3.1e-12 74.3 44 75.0
Phvul.003G037201 Phaseolus vulgaris HOM05D006345 ORTHO05D007428 3.1e-12 74.3 46 71.7
arahy.Tifrunner.gnm1.ann1.S1VR06 Arachis hypogaea HOM05D006345 ORTHO05D007428 4.0e-12 73.9 44 72.7
arahy.Tifrunner.gnm1.ann1.W97VC3 Arachis hypogaea HOM05D006345 ORTHO05D007428 4.0e-12 73.9 44 72.7
Nn3g17198 Nelumbo nucifera HOM05D006345 ORTHO05D007428 4.0e-12 73.9 44 70.5
Rhsim13G0136400 Rhododendron simsii HOM05D006345 ORTHO05D007428 4.0e-12 73.9 47 68.1
Solyc12g100070.3 Solanum lycopersicum HOM05D006345 ORTHO05D007428 4.0e-12 73.9 52 65.4
Dinv19690 Davidia involucrata HOM05D006345 ORTHO05D007428 5.3e-12 73.6 55 63.6
Lj3g0013440 Lotus japonicus HOM05D006345 ORTHO05D007428 5.3e-12 73.6 51 68.6
Manes.16G061100 Manihot esculenta HOM05D006345 ORTHO05D007428 5.3e-12 73.6 44 75.0
CAN.G575.62 Capsicum annuum HOM05D006345 ORTHO05D007428 6.9e-12 73.2 51 64.7
Glyma.03G027700 Glycine max HOM05D006345 ORTHO05D007428 6.9e-12 73.2 46 69.6
ClCG02G007550 Citrullus lanatus HOM05D006345 ORTHO05D007428 9.0e-12 72.8 44 70.5
Cpa.g.sc12.137 Carica papaya HOM05D006345 ORTHO05D007428 1.2e-11 72.4 46 67.4
Cc06_g02140 Coffea canephora HOM05D006345 ORTHO05D007428 1.2e-11 72.4 44 72.7
Sc05g0003040 Simmondsia chinensis HOM05D006345 ORTHO05D007428 1.2e-11 72.4 52 63.5
PGSC0003DMG400023836 Solanum tuberosum HOM05D006345 ORTHO05D007428 1.2e-11 72.4 51 64.7
CsaV3_7G007230 Cucumis sativus L. HOM05D006345 ORTHO05D007428 2.0e-11 71.6 44 68.2
Potri.001G073700 Populus trichocarpa HOM05D006345 ORTHO05D007428 2.0e-11 71.6 44 72.7
Prupe.4G121300 Prunus persica HOM05D006345 ORTHO05D007428 2.0e-11 71.6 52 63.5
Sabra01G0052000 Salix brachista HOM05D006345 ORTHO05D007428 2.0e-11 71.6 44 72.7
Thecc.04G283900 Theobroma cacao HOM05D006345 ORTHO05D007428 2.0e-11 71.6 46 67.4
DCAR_001254 Daucus carota HOM05D006345 ORTHO05D007428 2.6e-11 71.2 44 65.9
FAN25G2350 Fragaria x ananassa HOM05D006345 ORTHO05D007428 2.6e-11 71.2 52 61.5
Glyma.01G139633 Glycine max HOM05D006345 ORTHO05D007428 2.6e-11 71.2 46 67.4
Peaxi162Scf00062g10131 Petunia axillaris HOM05D006345 ORTHO05D007428 2.6e-11 71.2 44 70.5
TAR624G0710 Trochodendron aralioides HOM05D006345 ORTHO05D007428 2.6e-11 71.2 44 70.5
Medtr4g024860 Medicago truncatula HOM05D000001 ORTHO05D000003 3.4e-11 70.9 46 65.2
RcHm_v2.0_Chr5g0022101 Rosa chinensis HOM05D006345 ORTHO05D007428 3.4e-11 70.9 52 63.5
Sed0021159 Sechium edule HOM05D006345 ORTHO05D007428 3.4e-11 70.9 44 65.9
Sopen12g034690 Solanum pennellii HOM05D006345 ORTHO05D007428 3.4e-11 70.9 51 62.7
MELO3C018575.2 Cucumis melo HOM05D006345 ORTHO05D007428 4.5e-11 70.5 44 68.2
FvH4_3g13390 Fragaria vesca HOM05D006345 ORTHO05D007428 4.5e-11 70.5 52 61.5
FAN11G3812 Fragaria x ananassa HOM05D006345 ORTHO05D007428 4.5e-11 70.5 52 61.5
FAN21G0075 Fragaria x ananassa HOM05D006345 ORTHO05D007428 4.5e-11 70.5 52 61.5
HanXRQChr14g0447431 Helianthus annuus HOM05D006345 ORTHO05D007428 4.5e-11 70.5 44 65.9
QL08p052794 Quercus lobata HOM05D006345 ORTHO05D007428 5.8e-11 70.1 52 57.7
PGR042G3945 Punica granatum HOM05D006345 ORTHO05D007428 7.6e-11 69.7 52 61.5
VMungo1383G2204 Vigna mungo HOM05D006345 ORTHO05D007428 7.6e-11 69.7 46 65.2
Migut.D00572 Erythranthe guttata HOM05D006345 ORTHO05D007428 9.9e-11 69.3 44 65.9
SGA_v2.0_scaffold8G04616 Striga asiatica HOM05D006345 ORTHO05D007428 9.9e-11 69.3 46 63.0
CANSAT11G1250 Cannabis sativa HOM05D006345 ORTHO05D007428 1.7e-10 68.6 47 63.8
Psat7g230920 Pisum sativum HOM05D006345 ORTHO05D007428 1.7e-10 68.6 54 61.1
Aqoxy7G02153 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 2.9e-10 67.8 44 65.9
MSTRG.21400 Avicennia marina HOM05D006345 ORTHO05D007428 2.9e-10 67.8 44 63.6
TWI53G2073 Tripterygium wilfordii HOM05D006345 ORTHO05D007428 2.9e-10 67.8 44 63.6
SalBow2G1193 Salvia bowleyana HOM05D006345 ORTHO05D007428 3.8e-10 67.4 44 65.9
AUR62002307 Chenopodium quinoa HOM05D006345 ORTHO05D007428 6.4e-10 66.6 52 55.8
AUR62015383 Chenopodium quinoa HOM05D006345 ORTHO05D007428 6.4e-10 66.6 52 55.8
SalBow7G0027 Salvia bowleyana HOM05D006345 ORTHO05D007428 6.4e-10 66.6 44 65.9
Eucgr.F03783 Eucalyptus grandis HOM05D006345 ORTHO05D007428 8.4e-10 66.2 44 68.2
ATR0561G247 Amborella trichopoda HOM05D006345 ORTHO05D007428 1.1e-09 65.9 43 62.8
Oeu012935.1 Olea europaea HOM05D006345 ORTHO05D007428 1.1e-09 65.9 51 58.8
Ah.15g099610 Amaranthus hybridus HOM05D006345 ORTHO05D007428 1.4e-09 65.5 52 53.8
Gohir.A10G163600 Gossypium hirsutum HOM05D006345 ORTHO05D007428 1.4e-09 65.5 44 65.9
Gohir.D10G170000 Gossypium hirsutum HOM05D006345 ORTHO05D007428 1.4e-09 65.5 44 65.9
Gorai.011G189500 Gossypium raimondii HOM05D006345 ORTHO05D007428 1.4e-09 65.5 44 65.9
MBI16_g30839_MAGBIO Magnolia biondii HOM05D006345 ORTHO05D007428 1.4e-09 65.5 44 63.6
TPR.G7580 Trifolium pratense HOM05D006345 ORTHO05D007428 1.9e-09 65.1 46 63.0
ECA238G2485 Erigeron canadensis HOM05D006345 ORTHO05D007428 2.4e-09 64.7 44 59.1
Aqoxy3G02382 Aquilegia oxysepala HOM05D006345 ORTHO05D007428 3.2e-09 64.3 52 55.8
AL3G25340 Arabidopsis lyrata HOM05D006345 ORTHO05D007428 3.2e-09 64.3 52 55.8
EL10Ac3g05939 Beta vulgaris HOM05D006345 ORTHO05D007428 3.2e-09 64.3 52 55.8
Pp3c9_17440 Physcomitrium patens HOM05D006345 ORTHO05D007428 3.2e-09 64.3 44 61.4
Ah.07g202050 Amaranthus hybridus HOM05D006345 ORTHO05D007428 4.2e-09 63.9 46 58.7
FAN16G3736 Fragaria x ananassa HOM05D006345 ORTHO05D007428 4.2e-09 63.9 52 57.7
Mapoly0069s0066 Marchantia polymorpha HOM05D006345 ORTHO05D007428 4.2e-09 63.9 44 59.1
unitig_52.g17581 Utricularia gibba HOM05D006345 ORTHO05D007428 4.2e-09 63.9 46 54.3
MD05G1242200 Malus domestica HOM05D006345 ORTHO05D007428 7.1e-09 63.2 44 63.6
Aa31LG8G650 Aethionema arabicum HOM05D006345 ORTHO05D007428 9.3e-09 62.8 44 59.1
AT3G13440 Arabidopsis thaliana HOM05D006345 ORTHO05D007428 9.3e-09 62.8 52 53.8
SHI16738 Sapria himalayana HOM05D006345 ORTHO05D007428 9.3e-09 62.8 43 62.8
Sp3g11640 Schrenkiella parvula HOM05D006345 ORTHO05D007428 9.3e-09 62.8 47 57.4
THA.LOC104822694 Tarenaya hassleriana HOM05D006345 ORTHO05D007428 1.2e-08 62.4 44 61.4
Carub.0006s3398 Capsella rubella HOM05D006345 ORTHO05D007428 1.6e-08 62.0 47 57.4
Carub.0003s1288 Capsella rubella HOM05D006345 ORTHO05D007428 2.1e-08 61.6 47 57.4
BcaC09g48312 Brassica carinata HOM05D006345 ORTHO05D007428 2.7e-08 61.2 47 57.4
A01p40130 Brassica napus HOM05D006345 ORTHO05D007428 2.7e-08 61.2 47 57.4
C01p51620 Brassica napus HOM05D006345 ORTHO05D007428 2.7e-08 61.2 47 57.4
BolC1t05105H Brassica oleracea HOM05D006345 ORTHO05D007428 2.7e-08 61.2 47 57.4
BraA01t04054Z Brassica rapa HOM05D006345 ORTHO05D007428 2.7e-08 61.2 47 57.4
HPP92_018755 Vanilla planifolia HOM05D006345 ORTHO05D007428 2.7e-08 61.2 44 59.1
Zm00001eb211470 Zea mays HOM05D006345 ORTHO05D007428 2.7e-08 61.2 44 61.4
CARHR088090 Cardamine hirsuta HOM05D006345 ORTHO05D007428 4.6e-08 60.5 52 53.8
Thhalv10009961m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 4.6e-08 60.5 47 57.4
BcaB04g21015 Brassica carinata HOM05D006345 ORTHO05D007428 6.0e-08 60.1 47 55.3
BraA05t22416Z Brassica rapa HOM05D002140 ORTHO05D007428 6.0e-08 60.1 47 57.4
CBR_g45447 Chara braunii HOM05D006345 ORTHO05D007428 6.0e-08 60.1 49 53.1
Os03g0824200 Oryza sativa ssp. japonica HOM05D006345 ORTHO05D007428 6.0e-08 60.1 44 59.1
SMO358G0200 Selaginella moellendorffii HOM05D006345 ORTHO05D007428 7.9e-08 59.7 43 58.1
A05p36090 Brassica napus HOM05D002140 ORTHO05D007428 1.0e-07 59.3 47 55.3
Thhalv10021414m.g Eutrema salsugineum HOM05D006345 ORTHO05D007428 1.0e-07 59.3 47 55.3
BcaC05g29179 Brassica carinata HOM05D002140 ORTHO05D007428 1.3e-07 58.9 47 55.3
C05p54470 Brassica napus HOM05D002140 ORTHO05D007428 1.3e-07 58.9 47 55.3
BolC5t34114H Brassica oleracea HOM05D002140 ORTHO05D007428 1.3e-07 58.9 47 55.3
AagrBONN_evm.TU.Sc2ySwM_117.4015 Anthoceros agrestis HOM05D006345 ORTHO05D007428 1.9e-06 55.1 49 46.9
CDE04G1044 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 3.3e-06 54.3 44 50.0
CDE06G0136 Ceratophyllum demersum HOM05D006345 ORTHO05D007428 4.3e-06 53.9 44 50.0


User provided reference genes

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