Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 1.1e-198 696.4 342 100.0
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 2.2e-159 565.8 349 77.9
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 1.7e-156 556.2 341 76.0
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 1.5e-152 543.1 342 77.2
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 1.5e-152 543.1 341 74.5
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 4.4e-152 541.6 342 75.7
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 2.2e-151 539.3 342 74.9
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 2.9e-151 538.9 349 75.4
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.4e-150 535.8 342 75.4
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 4.1e-150 535.0 348 76.1
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 5.4e-150 534.6 347 76.4
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 5.4e-150 534.6 349 74.5
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 7.0e-150 534.3 349 74.5
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 9.2e-150 533.9 349 75.4
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 1.2e-149 533.5 349 75.1
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 7.8e-149 530.8 347 74.1
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 1.7e-148 529.6 341 76.5
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 3.9e-148 528.5 348 74.4
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 1.9e-147 526.2 345 73.9
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 4.3e-147 525.0 342 73.4
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 5.6e-147 524.6 348 73.3
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 7.3e-147 524.2 342 72.5
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 7.3e-147 524.2 348 73.0
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 1.6e-146 523.1 349 73.1
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 1.6e-146 523.1 349 72.5
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 2.8e-146 522.3 350 70.9
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 3.6e-146 521.9 345 73.6
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 6.2e-146 521.2 345 73.6
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 8.1e-146 520.8 342 71.1
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 1.4e-145 520.0 350 71.1
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 2.3e-145 519.2 345 73.3
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 3.1e-145 518.8 342 71.3
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 5.2e-145 518.1 351 70.9
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 6.8e-145 517.7 342 71.6
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 8.9e-145 517.3 342 71.3
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 1.5e-144 516.5 347 71.8
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.4e-144 515.4 351 70.7
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 4.4e-144 515.0 349 72.8
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 9.9e-144 513.8 349 70.5
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 9.9e-144 513.8 341 71.6
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 1.3e-143 513.5 345 70.4
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 1.3e-143 513.5 349 71.3
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 1.7e-143 513.1 342 71.1
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 2.9e-143 512.3 347 70.0
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 2.9e-143 512.3 349 71.9
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 3.7e-143 511.9 349 70.8
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 6.4e-143 511.1 351 70.9
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 6.4e-143 511.1 344 71.2
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.4e-142 510.0 350 70.0
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 1.9e-142 509.6 344 71.8
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 1.9e-142 509.6 349 69.6
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.2e-142 508.8 344 70.9
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.4e-142 508.1 344 70.6
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 7.1e-142 507.7 351 70.9
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.7e-141 505.8 342 72.5
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 6.0e-141 504.6 347 68.9
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 7.8e-141 504.2 346 69.1
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 7.8e-141 504.2 349 70.5
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.7e-140 503.1 342 69.9
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 5.1e-140 501.5 342 71.9
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 6.6e-140 501.1 349 68.5
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 1.6e-138 496.5 356 69.1
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 3.6e-138 495.4 347 68.3
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 1.1e-137 493.8 341 70.1
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 1.4e-137 493.4 344 69.8
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 1.8e-137 493.0 346 68.8
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 3.1e-137 492.3 342 69.0
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 4.0e-137 491.9 342 68.7
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 6.8e-137 491.1 345 68.7
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 1.2e-136 490.3 344 69.5
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 2.0e-136 489.6 345 69.6
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 2.0e-136 489.6 345 69.6
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 2.6e-136 489.2 344 69.2
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 2.6e-136 489.2 344 70.3
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 3.4e-136 488.8 352 66.2
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 4.4e-136 488.4 348 68.1
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 4.4e-136 488.4 345 69.6
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 9.9e-136 487.3 351 66.4
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.2e-135 486.1 351 66.7
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 8.4e-135 484.2 349 66.5
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 4.1e-134 481.9 351 65.2
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 2.7e-133 479.2 341 70.1
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 4.6e-133 478.4 346 69.1
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 6.0e-133 478.0 353 65.4
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 2.3e-132 476.1 341 67.4
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 3.0e-132 475.7 348 67.0
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.9e-132 475.3 346 67.6
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 3.9e-132 475.3 344 68.0
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 1.1e-131 473.8 349 65.9
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 1.1e-131 473.8 349 67.3
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 1.5e-131 473.4 320 72.2
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 2.5e-131 472.6 343 69.4
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 2.5e-131 472.6 348 67.0
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 2.5e-131 472.6 341 67.2
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 9.6e-131 470.7 359 63.8
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.1e-130 469.5 346 66.8
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 2.8e-130 469.2 342 66.1
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.6e-130 468.8 343 70.3
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.6e-130 468.8 343 70.3
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 4.7e-130 468.4 343 66.2
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 1.1e-129 467.2 349 66.5
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.4e-129 466.8 352 63.6
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 3.4e-128 462.2 347 66.6
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 7.6e-128 461.1 346 66.8
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 7.6e-128 461.1 345 66.7
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 1.3e-127 460.3 346 65.6
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.3e-127 460.3 344 64.5
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 1.7e-127 459.9 347 66.9
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 1.7e-127 459.9 347 66.9
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 3.8e-127 458.8 346 66.2
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 3.8e-127 458.8 333 65.8
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 4.9e-127 458.4 343 65.9
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 6.4e-127 458.0 347 66.3
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 2.4e-126 456.1 346 65.0
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 1.2e-125 453.8 348 66.1
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 7.8e-125 451.1 347 62.2
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 5.6e-123 444.9 347 61.7
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 7.3e-123 444.5 347 61.4
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 3.6e-122 442.2 342 64.6
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 1.2e-120 437.2 349 61.3
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.9e-118 429.9 340 63.5
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 9.3e-118 427.6 327 63.3
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 3.0e-116 422.5 342 64.0
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.8e-113 413.3 273 72.2
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 3.9e-108 395.6 335 61.5
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.9e-107 393.3 294 64.6
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 2.4e-97 359.8 263 68.1
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.9e-91 340.1 301 60.8
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 1.7e-90 337.0 245 66.1
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 1.7e-90 337.0 245 66.1
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 2.2e-82 310.1 347 48.7
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 3.4e-80 302.8 345 49.3
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 5.2e-68 262.3 196 66.3
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 1.4e-65 254.2 146 84.2
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.2e-58 230.3 157 69.4
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 3.3e-54 216.5 141 68.8
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 8.0e-53 211.8 257 47.1
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 6.8e-52 208.8 290 44.1
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 8.3e-50 201.8 166 61.4
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 6.6e-39 165.6 146 56.2
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.9e-38 164.1 108 71.3
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 1.2e-32 144.8 138 57.2
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 2.5e-30 137.1 110 66.4
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 2.8e-29 133.7 111 63.1
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 1.1e-28 131.7 100 59.0
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 3.3e-14 83.6 53 71.7
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 7.8e-08 62.4 54 53.7


User provided reference genes

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