Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P1031T30 Lonicera japonica HOM05D004660 ORTHO05D005474 9.2e-86 320.1 150 100.0
Hma1.2p1_0115F.1_g055760 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 1.7e-71 272.7 150 88.0
Hma1.2p1_0415F.1_g148340 Hydrangea macrophylla HOM05D004660 ORTHO05D005474 3.7e-71 271.6 150 85.3
Rhsim09G0211000 Rhododendron simsii HOM05D004660 ORTHO05D005474 2.4e-70 268.9 150 85.3
vmacro10172 Vaccinium macrocarpon HOM05D004660 ORTHO05D005474 9.2e-70 266.9 150 85.3
arahy.Tifrunner.gnm1.ann1.6FR5WN Arachis hypogaea HOM05D004660 ORTHO05D005474 1.6e-69 266.2 150 82.7
Nitab4.5_0007121g0060 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.0e-69 265.8 150 84.7
Cpa.g.sc3.184 Carica papaya HOM05D004660 ORTHO05D005474 2.7e-69 265.4 150 84.7
Nitab4.5_0000021g0160 Nicotiana tabacum HOM05D004660 ORTHO05D005474 2.7e-69 265.4 150 84.7
CSS0035101 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 3.5e-69 265.0 150 85.3
CSS0012455 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 6.0e-69 264.2 150 84.0
Migut.F00125 Erythranthe guttata HOM05D004660 ORTHO05D005474 1.0e-68 263.5 150 83.3
Solyc03g079970.1 Solanum lycopersicum HOM05D004660 ORTHO05D005474 1.0e-68 263.5 150 83.3
PGSC0003DMG400000574 Solanum tuberosum HOM05D004660 ORTHO05D005474 1.0e-68 263.5 150 83.3
MSTRG.26954 Avicennia marina HOM05D004660 ORTHO05D005474 1.7e-68 262.7 150 82.0
GSVIVG01038677001 Vitis vinifera HOM05D004660 ORTHO05D005474 1.7e-68 262.7 150 84.0
Sopen03g021700 Solanum pennellii HOM05D004660 ORTHO05D005474 3.0e-68 261.9 150 82.7
Oeu055424.1 Olea europaea HOM05D004660 ORTHO05D005474 3.9e-68 261.5 150 83.3
CAN.G303.55 Capsicum annuum HOM05D004660 ORTHO05D005474 5.0e-68 261.2 150 84.0
Glyma.04G225900 Glycine max HOM05D004660 ORTHO05D005474 1.1e-67 260.0 150 81.3
DCAR_014568 Daucus carota HOM05D004660 ORTHO05D005474 1.9e-67 259.2 150 83.3
VMungo0647G0407 Vigna mungo HOM05D004660 ORTHO05D005474 3.3e-67 258.5 150 81.3
Glyma.06G138900 Glycine max HOM05D004660 ORTHO05D005474 5.6e-67 257.7 150 80.7
Potri.015G000900 Populus trichocarpa HOM05D004660 ORTHO05D005474 5.6e-67 257.7 150 80.0
Haze_00331 Corylus avellana HOM05D004660 ORTHO05D005474 1.2e-66 256.5 150 81.3
Phvul.008G188100 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.2e-66 256.5 150 81.3
Duzib205G1429 Durio zibethinus HOM05D004660 ORTHO05D005474 1.6e-66 256.1 150 80.7
DCAR_020388 Daucus carota HOM05D004660 ORTHO05D005474 2.8e-66 255.4 150 80.7
Thecc.03G211800 Theobroma cacao HOM05D004660 ORTHO05D005474 8.1e-66 253.8 150 78.0
TPR.G27918 Trifolium pratense HOM05D004660 ORTHO05D005474 8.1e-66 253.8 150 79.3
Atru.chr12.2504 Acer truncatum HOM05D004660 ORTHO05D005474 1.8e-65 252.7 150 82.0
Atru.chr12.2527 Acer truncatum HOM05D004660 ORTHO05D005474 1.8e-65 252.7 150 82.0
CiPaw.06G038500 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.8e-65 252.7 150 79.3
Glyma.02G221000 Glycine max HOM05D004660 ORTHO05D005474 2.3e-65 252.3 150 80.0
Lj1g0017846 Lotus japonicus HOM05D004660 ORTHO05D005474 3.1e-65 251.9 150 79.3
VMungo1309G2317 Vigna mungo HOM05D004660 ORTHO05D005474 4.0e-65 251.5 150 78.0
Migut.F00969 Erythranthe guttata HOM05D004660 ORTHO05D005474 5.2e-65 251.1 151 81.5
Peaxi162Scf01026g00258 Petunia axillaris HOM05D004660 ORTHO05D005474 5.2e-65 251.1 141 85.8
SalBow4G0874 Salvia bowleyana HOM05D004660 ORTHO05D005474 6.8e-65 250.8 150 77.3
Medtr5g068660 Medicago truncatula HOM05D004660 ORTHO05D005474 1.2e-64 250.0 151 77.5
Psat2g060520 Pisum sativum HOM05D004660 ORTHO05D005474 1.2e-64 250.0 150 76.7
Psat7g096840 Pisum sativum HOM05D004660 ORTHO05D005474 1.2e-64 250.0 150 76.7
Glyma.14G188500 Glycine max HOM05D004660 ORTHO05D005474 2.0e-64 249.2 150 78.7
SGA_v2.0_scaffold18G08494 Striga asiatica HOM05D004660 ORTHO05D005474 2.6e-64 248.8 147 78.9
CANSAT21G0927 Cannabis sativa HOM05D004660 ORTHO05D005474 4.4e-64 248.1 151 76.8
Ciclev10022731m.g Citrus clementina HOM05D004660 ORTHO05D005474 4.4e-64 248.1 150 79.3
Ca_05550_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 5.8e-64 247.7 150 76.0
Oeu061046.1 Olea europaea HOM05D004660 ORTHO05D005474 5.8e-64 247.7 150 80.0
SGA_v2.0_scaffold44G16872 Striga asiatica HOM05D004660 ORTHO05D005474 7.5e-64 247.3 151 78.8
Gohir.A08G106300 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.3e-63 246.5 150 78.0
Gohir.D08G117700 Gossypium hirsutum HOM05D004660 ORTHO05D005474 1.3e-63 246.5 150 77.3
Gorai.004G126200 Gossypium raimondii HOM05D004660 ORTHO05D005474 1.3e-63 246.5 150 77.3
COL.COLO4_14397 Corchorus olitorius HOM05D004660 ORTHO05D005474 2.2e-63 245.7 143 81.1
Lj3P891T43 Lonicera japonica HOM05D004660 ORTHO05D005474 3.7e-63 245.0 150 77.3
LjContig00312_ERROPOS870357g0003416 Lotus japonicus HOM05D004660 ORTHO05D005474 4.9e-63 244.6 150 78.0
HanXRQChr01g0002691 Helianthus annuus HOM05D004660 ORTHO05D005474 8.3e-63 243.8 155 76.1
LjContig00155g0012911 Lotus japonicus HOM05D004660 ORTHO05D005474 8.3e-63 243.8 150 74.0
AL5G29390 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.1e-62 243.4 150 76.0
BraA06t25770Z Brassica rapa HOM05D004660 ORTHO05D005474 1.4e-62 243.0 150 74.7
Lalb_Chr10g0102981 Lupinus albus HOM05D004660 ORTHO05D005474 1.4e-62 243.0 150 76.7
Phvul.009G040000 Phaseolus vulgaris HOM05D004660 ORTHO05D005474 1.4e-62 243.0 150 76.7
Psat5g071200 Pisum sativum HOM05D004660 ORTHO05D005474 1.4e-62 243.0 150 78.7
CiPaw.05G208600 Carya illinoinensis HOM05D004660 ORTHO05D005474 1.9e-62 242.7 150 76.7
BcaB02g09594 Brassica carinata HOM05D004660 ORTHO05D005474 2.4e-62 242.3 150 74.7
MBI12_g37476_MAGBIO Magnolia biondii HOM05D004660 ORTHO05D005474 3.2e-62 241.9 148 76.4
THA.LOC104814957 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 5.4e-62 241.1 150 75.3
THA.LOC104803315 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 9.2e-62 240.4 150 75.3
Potri.012G004900 Populus trichocarpa HOM05D004660 ORTHO05D005474 2.1e-61 239.2 150 72.7
A06p28270 Brassica napus HOM05D004660 ORTHO05D005474 2.7e-61 238.8 150 74.0
Thhalv10010801m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 2.7e-61 238.8 151 74.2
TWI39G0024 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 2.7e-61 238.8 150 75.3
QL09p006015 Quercus lobata HOM05D004660 ORTHO05D005474 3.5e-61 238.4 150 74.0
Sp2g22770 Schrenkiella parvula HOM05D004660 ORTHO05D005474 4.6e-61 238.0 152 74.3
Sc19g0000390 Simmondsia chinensis HOM05D004660 ORTHO05D005474 6.0e-61 237.7 150 74.7
Aqoxy5G04391 Aquilegia oxysepala HOM05D004660 ORTHO05D005474 7.8e-61 237.3 152 76.3
Carub.0006s2247 Capsella rubella HOM05D004660 ORTHO05D005474 1.0e-60 236.9 152 75.0
ClCG07G009740 Citrullus lanatus HOM05D004660 ORTHO05D005474 1.3e-60 236.5 150 74.0
FvH4_7g33300 Fragaria vesca HOM05D004660 ORTHO05D005474 1.7e-60 236.1 150 74.0
Sed0002848 Sechium edule HOM05D004660 ORTHO05D005474 1.7e-60 236.1 150 74.0
Sed0024142 Sechium edule HOM05D004660 ORTHO05D005474 2.3e-60 235.7 150 74.0
TAR629G0239 Trochodendron aralioides HOM05D004660 ORTHO05D005474 2.3e-60 235.7 150 76.0
Ca_16837_v3 Cicer arietinum L. HOM05D004660 ORTHO05D005474 3.9e-60 235.0 148 74.3
Sp5g12560 Schrenkiella parvula HOM05D004660 ORTHO05D005474 3.9e-60 235.0 150 74.0
Manes.05G195800 Manihot esculenta HOM05D004660 ORTHO05D005474 6.6e-60 234.2 150 72.0
EL10Ac3g05134 Beta vulgaris HOM05D004660 ORTHO05D005474 8.6e-60 233.8 150 72.0
Thhalv10005081m.g Eutrema salsugineum HOM05D004660 ORTHO05D005474 8.6e-60 233.8 152 73.7
RcHm_v2.0_Chr1g0383281 Rosa chinensis HOM05D004660 ORTHO05D005474 8.6e-60 233.8 150 72.7
TWI23G0412 Tripterygium wilfordii HOM05D004660 ORTHO05D005474 8.6e-60 233.8 150 74.7
AUR62005951 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.1e-59 233.4 150 72.7
AUR62028114 Chenopodium quinoa HOM05D004660 ORTHO05D005474 1.5e-59 233.0 150 72.7
Prupe.2G321900 Prunus persica HOM05D004660 ORTHO05D005474 1.5e-59 233.0 150 73.3
AL6G36220 Arabidopsis lyrata HOM05D004660 ORTHO05D005474 1.9e-59 232.6 150 73.3
FAN10G1296 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.9e-59 232.6 150 72.7
FAN10G4080 Fragaria x ananassa HOM05D004660 ORTHO05D005474 1.9e-59 232.6 150 72.7
FAN01G2536 Fragaria x ananassa HOM05D004660 ORTHO05D005474 2.5e-59 232.3 150 73.3
TPR.G35910 Trifolium pratense HOM05D004660 ORTHO05D005474 3.3e-59 231.9 150 74.7
CsaV3_4G009710 Cucumis sativus L. HOM05D004660 ORTHO05D005474 4.3e-59 231.5 150 72.0
Ah.13g071030 Amaranthus hybridus HOM05D004660 ORTHO05D005474 5.6e-59 231.1 150 72.0
unitig_92.g28236 Utricularia gibba HOM05D004660 ORTHO05D005474 9.5e-59 230.3 150 72.7
AT3G49550 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.6e-58 229.6 152 73.7
Aa31LG11G3870 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.1e-58 229.2 149 72.5
MELO3C024844.2 Cucumis melo HOM05D004660 ORTHO05D005474 2.1e-58 229.2 150 71.3
BcaNung01246 Brassica carinata HOM05D004660 ORTHO05D005474 4.7e-58 228.0 150 70.7
Gohir.D12G245400 Gossypium hirsutum HOM05D004660 ORTHO05D005474 4.7e-58 228.0 135 80.0
Gohir.A12G244500 Gossypium hirsutum HOM05D004660 ORTHO05D005474 6.2e-58 227.6 135 77.8
Gorai.008G263000 Gossypium raimondii HOM05D004660 ORTHO05D005474 6.2e-58 227.6 135 77.8
AT5G24610 Arabidopsis thaliana HOM05D004660 ORTHO05D005474 1.1e-57 226.9 149 73.8
MD01G1231200 Malus domestica HOM05D004660 ORTHO05D005474 1.1e-57 226.9 150 71.3
arahy.Tifrunner.gnm1.ann1.N0NSHG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.4e-57 226.5 134 79.1
Carub.0005s1588 Capsella rubella HOM05D004660 ORTHO05D005474 2.4e-57 225.7 136 76.5
A06p35410 Brassica napus HOM05D004660 ORTHO05D005474 3.1e-57 225.3 150 69.3
BraA06t26464Z Brassica rapa HOM05D004660 ORTHO05D005474 3.1e-57 225.3 150 69.3
C03p65490 Brassica napus HOM05D004660 ORTHO05D005474 4.0e-57 224.9 135 75.6
CARHR188840 Cardamine hirsuta HOM05D004660 ORTHO05D005474 6.8e-57 224.2 154 72.1
BcaC09g49961 Brassica carinata HOM05D004660 ORTHO05D005474 1.5e-56 223.0 151 72.2
BolC1t03007H Brassica oleracea HOM05D004660 ORTHO05D005474 1.5e-56 223.0 151 72.2
A01p24630 Brassica napus HOM05D004660 ORTHO05D005474 2.0e-56 222.6 151 71.5
BraA01t02375Z Brassica rapa HOM05D004660 ORTHO05D005474 2.0e-56 222.6 151 71.5
Ah.13g069080 Amaranthus hybridus HOM05D004660 ORTHO05D005474 7.6e-56 220.7 150 68.7
unitig_37.g11998 Utricularia gibba HOM05D004660 ORTHO05D005474 7.6e-56 220.7 150 69.3
THA.LOC104799676 Tarenaya hassleriana HOM05D004660 ORTHO05D005474 9.9e-56 220.3 150 69.3
FAN03G0846 Fragaria x ananassa HOM05D004660 ORTHO05D005474 4.9e-55 218.0 144 71.5
CARHR158560 Cardamine hirsuta HOM05D004660 ORTHO05D005474 8.4e-55 217.2 151 68.2
ATR0579G143 Amborella trichopoda HOM05D004660 ORTHO05D005474 1.1e-54 216.9 151 69.5
BcaB07g29917 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-54 216.9 151 70.9
Lsat_1_v5_gn_6_117240 Lactuca sativa HOM05D004660 ORTHO05D005474 1.9e-54 216.1 152 74.3
BcaC03g17953 Brassica carinata HOM05D004660 ORTHO05D005474 3.2e-54 215.3 151 69.5
C02p60130 Brassica napus HOM05D004660 ORTHO05D005474 3.2e-54 215.3 151 69.5
BolC2t12069H Brassica oleracea HOM05D004660 ORTHO05D005474 3.2e-54 215.3 151 69.5
A02p40180 Brassica napus HOM05D004660 ORTHO05D005474 1.2e-53 213.4 151 69.5
BraA02t08983Z Brassica rapa HOM05D004660 ORTHO05D005474 2.7e-53 212.2 151 68.9
CSS0045456 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 6.0e-53 211.1 121 81.0
Zm00001eb220600 Zea mays HOM05D004660 ORTHO05D005474 6.0e-53 211.1 150 66.7
arahy.Tifrunner.gnm1.ann1.0Y4BRG Arachis hypogaea HOM05D004660 ORTHO05D005474 1.3e-52 209.9 134 76.1
Manes.01G050300 Manihot esculenta HOM05D004660 ORTHO05D005474 1.7e-52 209.5 129 76.0
BcaNung02008 Brassica carinata HOM05D004660 ORTHO05D005474 1.1e-51 206.8 150 67.3
C07p43100 Brassica napus HOM05D004660 ORTHO05D005474 1.1e-51 206.8 150 67.3
BolC7t44836H Brassica oleracea HOM05D004660 ORTHO05D005474 1.1e-51 206.8 150 67.3
Nn3g18745 Nelumbo nucifera HOM05D004660 ORTHO05D005474 4.0e-49 198.4 135 72.6
Zm00001eb043850 Zea mays HOM05D004660 ORTHO05D005474 6.9e-49 197.6 150 62.7
Os10g0509100 Oryza sativa ssp. japonica HOM05D004660 ORTHO05D005474 1.5e-48 196.4 150 64.0
RcHm_v2.0_Chr4g0433201 Rosa chinensis HOM05D004660 ORTHO05D005474 2.6e-48 195.7 126 73.0
Cc02_g00620 Coffea canephora HOM05D004660 ORTHO05D005474 1.0e-44 183.7 150 65.3
Medtr3g093320 Medicago truncatula HOM05D004660 ORTHO05D005474 6.2e-42 174.5 150 62.0
CSS0032658 Camellia sinensis var. sinensis HOM05D004660 ORTHO05D005474 9.0e-41 170.6 150 62.0
BcaC01g02416 Brassica carinata HOM05D004660 ORTHO05D005474 1.9e-38 162.9 105 73.3
SalBow2G1279 Salvia bowleyana HOM05D004660 ORTHO05D005474 6.0e-37 157.9 100 79.0
MD07G1303200 Malus domestica HOM05D004660 ORTHO05D005474 8.7e-36 154.1 105 70.5
SEGI_20417 Sequoiadendron giganteum HOM05D004660 ORTHO05D005474 4.0e-33 145.2 152 53.3
Mapoly0204s0014 Marchantia polymorpha HOM05D004660 ORTHO05D005474 2.4e-30 136.0 126 53.2
Aa31LG4G18040 Aethionema arabicum HOM05D004660 ORTHO05D005474 2.9e-23 112.5 130 50.8
SMO351G0342 Selaginella moellendorffii HOM05D004660 ORTHO05D005474 8.4e-23 110.9 122 46.7
Actinidia08719 Actinidia chinensis HOM05D004660 ORTHO05D005474 1.1e-22 110.5 72 80.6
DCAR_001793 Daucus carota HOM05D000001 ORTHO05D000003 5.5e-22 108.2 79 74.7
AagrBONN_evm.TU.Sc2ySwM_117.1216 Anthoceros agrestis HOM05D004660 ORTHO05D005474 2.8e-18 95.9 90 52.2
arahy.Tifrunner.gnm1.ann1.RHW5C7 Arachis hypogaea HOM05D017329 ORTHO05D005474 3.9e-12 75.5 37 83.8
Cre07.g345800 Chlamydomonas reinhardtii HOM05D004660 ORTHO05D005474 4.3e-11 72.0 85 40.0
PRCOL_00007052 Prasinoderma coloniale HOM05D004660 ORTHO05D005474 1.7e-07 60.1 72 38.9


User provided reference genes

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