Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1P1010T36 Lonicera japonica HOM05D003548 ORTHO05D004066 8.2e-123 444.5 381 100.0
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 3.2e-34 150.2 521 49.7
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 3.3e-31 140.2 417 55.4
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 6.2e-30 136.0 511 49.5
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 1.4e-29 134.8 147 50.3
CSS0041240 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 2.0e-20 104.4 133 51.1
CSS0049608 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 2.0e-20 104.4 133 51.1
vmacro06591 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 2.9e-19 100.5 122 52.5
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 2.5e-18 97.4 142 44.4
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 5.5e-18 96.3 129 46.5
HanXRQChr09g0253141 Helianthus annuus HOM05D003548 ORTHO05D004066 7.1e-18 95.9 113 53.1
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 7.1e-18 95.9 125 45.6
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 9.3e-18 95.5 122 47.5
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 2.1e-17 94.4 125 46.4
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 2.3e-16 90.9 135 40.7
Migut.F01061 Erythranthe guttata HOM05D003548 ORTHO05D004066 3.9e-16 90.1 147 38.8
GSVIVG01028755001 Vitis vinifera HOM05D003548 ORTHO05D004066 6.7e-16 89.4 128 47.7
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 1.9e-15 87.8 141 38.3
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 2.5e-15 87.4 141 35.5
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 4.3e-15 86.7 142 36.6
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 4.3e-15 86.7 144 38.9
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 7.4e-15 85.9 386 55.4
arahy.Tifrunner.gnm1.ann1.36D870 Arachis hypogaea HOM05D003548 ORTHO05D004066 4.8e-14 83.2 148 33.8
arahy.Tifrunner.gnm1.ann1.59PT6M Arachis hypogaea HOM05D003548 ORTHO05D004066 4.8e-14 83.2 147 33.3
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 6.2e-14 82.8 121 41.3
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 1.4e-13 81.6 134 35.8
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 1.4e-13 81.6 145 34.5
Lsat_1_v5_gn_9_57161 Lactuca sativa HOM05D003548 ORTHO05D004066 1.8e-13 81.3 115 46.1
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 2.4e-13 80.9 142 36.6
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 3.1e-13 80.5 140 37.1
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 3.1e-13 80.5 127 43.3
DCAR_020295 Daucus carota HOM05D003548 ORTHO05D004066 5.3e-13 79.7 119 42.9
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 6.9e-13 79.3 134 35.1
ECA232G3387 Erigeron canadensis HOM05D003548 ORTHO05D004066 6.9e-13 79.3 92 53.3
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 6.9e-13 79.3 145 33.8
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 6.9e-13 79.3 138 37.0
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 9.0e-13 79.0 144 38.2
Gohir.D03G080200 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.2e-12 78.6 136 36.8
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 1.5e-12 78.2 138 37.0
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 1.5e-12 78.2 127 42.5
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 2.6e-12 77.4 139 36.7
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 2.6e-12 77.4 135 37.0
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 4.5e-12 76.6 149 35.6
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 4.5e-12 76.6 149 35.6
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 4.5e-12 76.6 140 36.4
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 5.8e-12 76.3 153 36.6
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 7.6e-12 75.9 93 47.3
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 7.6e-12 75.9 131 42.7
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 1.0e-11 75.5 145 37.9
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 1.0e-11 75.5 144 38.9
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 1.3e-11 75.1 134 34.3
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 2.9e-11 73.9 140 34.3
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.9e-11 73.9 138 37.0
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 2.9e-11 73.9 149 34.9
AUR62021071 Chenopodium quinoa HOM05D003548 ORTHO05D004066 3.8e-11 73.6 113 41.6
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 3.8e-11 73.6 104 41.3
Nitab4.5_0001748g0030 Nicotiana tabacum HOM05D003548 ORTHO05D004066 3.8e-11 73.6 115 43.5
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 5.0e-11 73.2 141 34.0
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 5.0e-11 73.2 138 36.2
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 6.5e-11 72.8 102 41.2
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 6.5e-11 72.8 92 47.8
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 6.5e-11 72.8 112 44.6
Ah.13g069690 Amaranthus hybridus HOM05D003548 ORTHO05D004066 1.1e-10 72.0 111 42.3
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.1e-10 72.0 99 47.5
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 1.4e-10 71.6 113 42.5
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.4e-10 71.6 137 35.8
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.4e-10 71.6 138 36.2
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 1.4e-10 71.6 142 35.9
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 1.4e-10 71.6 121 38.8
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 1.4e-10 71.6 128 37.5
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.9e-10 71.2 113 42.5
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 1.9e-10 71.2 121 40.5
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 2.5e-10 70.9 140 37.9
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 2.5e-10 70.9 154 33.8
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 3.2e-10 70.5 138 36.2
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 4.2e-10 70.1 151 33.8
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 4.2e-10 70.1 100 44.0
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 4.2e-10 70.1 137 35.0
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 4.2e-10 70.1 110 40.9
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 5.5e-10 69.7 130 41.5
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 5.5e-10 69.7 112 40.2
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 7.2e-10 69.3 118 40.7
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 7.2e-10 69.3 138 35.5
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 7.2e-10 69.3 71 46.5
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 9.3e-10 68.9 135 33.3
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 1.2e-09 68.6 130 42.3
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 1.2e-09 68.6 102 42.2
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.2e-09 68.6 99 42.4
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 1.2e-09 68.6 105 41.9
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 1.6e-09 68.2 102 38.2
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 2.1e-09 67.8 139 32.4
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 2.1e-09 67.8 121 38.8
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 2.7e-09 67.4 142 33.8
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 3.5e-09 67.0 105 41.9
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 3.5e-09 67.0 142 33.8
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 3.5e-09 67.0 128 35.2
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 4.6e-09 66.6 133 33.1
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 6.1e-09 66.2 104 44.2
Nitab4.5_0000966g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 6.1e-09 66.2 144 36.8
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 6.1e-09 66.2 131 31.3
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 1.0e-08 65.5 52 59.6
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 1.0e-08 65.5 104 43.3
Ciclev10019140m.g Citrus clementina HOM05D003548 ORTHO05D004066 1.3e-08 65.1 106 40.6
Nitab4.5_0007898g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 1.3e-08 65.1 144 35.4
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 1.8e-08 64.7 126 35.7
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 1.8e-08 64.7 102 38.2
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 2.3e-08 64.3 127 36.2
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 2.3e-08 64.3 109 39.4
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 3.0e-08 63.9 99 43.4
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 3.9e-08 63.5 142 34.5
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 3.9e-08 63.5 70 50.0
Rhsim02G0237300 Rhododendron simsii HOM05D003548 ORTHO05D004066 3.9e-08 63.5 136 35.3
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 3.9e-08 63.5 59 54.2
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 3.9e-08 63.5 59 54.2
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 5.1e-08 63.2 105 41.0
HanXRQChr06g0166281 Helianthus annuus HOM05D003548 ORTHO05D004066 5.1e-08 63.2 79 45.6
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 5.1e-08 63.2 54 57.4
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 5.1e-08 63.2 115 39.1
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 6.7e-08 62.8 133 31.6
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 6.7e-08 62.8 101 39.6
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 6.7e-08 62.8 110 40.9
Sc01g0009980 Simmondsia chinensis HOM05D003548 ORTHO05D004066 8.7e-08 62.4 105 39.0
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 1.1e-07 62.0 105 40.0
MBI07_g06320_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.1e-07 62.0 103 42.7
AUR62019776 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.5e-07 61.6 118 39.8
HanXRQChr15g0493381 Helianthus annuus HOM05D003548 ORTHO05D004066 1.5e-07 61.6 93 48.4
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 1.5e-07 61.6 133 33.1
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 1.5e-07 61.6 103 41.7
AUR62010777 Chenopodium quinoa HOM05D003548 ORTHO05D004066 2.5e-07 60.8 122 37.7
Os01g0621900 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 2.5e-07 60.8 121 33.9
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 2.5e-07 60.8 144 31.2
RcHm_v2.0_Chr7g0196081 Rosa chinensis HOM05D003548 ORTHO05D004066 2.5e-07 60.8 106 41.5
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 2.5e-07 60.8 139 37.4
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 3.3e-07 60.5 107 39.3
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 3.3e-07 60.5 116 32.8
Zm00001eb159560 Zea mays HOM05D003548 ORTHO05D004066 3.3e-07 60.5 114 36.0
ATR1131G034 Amborella trichopoda HOM05D003548 ORTHO05D004066 4.3e-07 60.1 127 34.6
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 4.3e-07 60.1 59 54.2
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 5.7e-07 59.7 59 50.8
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 5.7e-07 59.7 149 32.2
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 7.4e-07 59.3 101 44.6
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 1.3e-06 58.5 117 37.6
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 1.3e-06 58.5 105 39.0
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 2.2e-06 57.8 97 39.2
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 2.2e-06 57.8 105 39.0
SGA_v2.0_scaffold96G28999 Striga asiatica HOM05D003548 ORTHO05D004066 2.8e-06 57.4 56 53.6
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 3.7e-06 57.0 54 55.6
Rhsim02G0237200 Rhododendron simsii HOM05D003548 ORTHO05D004066 3.7e-06 57.0 137 32.8
Aa31LG2G1190 Aethionema arabicum HOM05D003548 ORTHO05D004066 4.8e-06 56.6 102 40.2
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 4.8e-06 56.6 118 35.6
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 6.3e-06 56.2 107 37.4
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 6.3e-06 56.2 128 35.2
Peaxi162Scf00029g00287 Petunia axillaris HOM05D000455 ORTHO05D011453 6.3e-06 56.2 52 51.9
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 8.2e-06 55.8 103 39.8


User provided reference genes

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