Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C965T6 Lonicera japonica HOM05D006829 ORTHO05D008742 2.4e-105 385.6 205 100.0
Haze_17346 Corylus avellana HOM05D006829 ORTHO05D008742 5.6e-70 268.1 210 66.2
Cfa001216 Carpinus fangiana HOM05D006829 ORTHO05D008742 1.3e-69 266.9 210 66.2
Cfa001217 Carpinus fangiana HOM05D006829 ORTHO05D008742 1.3e-69 266.9 210 66.2
CSS0026526 Camellia sinensis var. sinensis HOM05D006829 ORTHO05D008742 2.8e-69 265.8 202 65.8
CsaV3_5G010870 Cucumis sativus L. HOM05D006829 ORTHO05D008742 1.4e-68 263.5 211 64.0
TAR636G3228 Trochodendron aralioides HOM05D006829 ORTHO05D008742 3.1e-68 262.3 164 75.0
ClCG07G005040 Citrullus lanatus HOM05D006829 ORTHO05D008742 5.3e-68 261.5 211 63.0
Duzib114G0477 Durio zibethinus HOM05D006829 ORTHO05D008742 1.5e-67 260.0 204 61.8
MELO3C020140.2 Cucumis melo HOM05D006829 ORTHO05D008742 4.5e-67 258.5 211 61.6
Prupe.2G262600 Prunus persica HOM05D006829 ORTHO05D008742 1.0e-66 257.3 213 61.5
Nn5g26868 Nelumbo nucifera HOM05D006829 ORTHO05D008742 2.2e-66 256.1 162 72.8
Gohir.D05G279500 Gossypium hirsutum HOM05D006829 ORTHO05D008742 2.9e-66 255.8 204 62.7
Gorai.009G293000 Gossypium raimondii HOM05D006829 ORTHO05D008742 2.9e-66 255.8 204 62.7
QL08p064642 Quercus lobata HOM05D006829 ORTHO05D008742 2.9e-66 255.8 205 65.4
Manes.07G140300 Manihot esculenta HOM05D006829 ORTHO05D008742 3.8e-66 255.4 202 60.4
Gohir.A05G277900 Gossypium hirsutum HOM05D006829 ORTHO05D008742 4.9e-66 255.0 204 62.3
TWI53G0389 Tripterygium wilfordii HOM05D006829 ORTHO05D008742 8.4e-66 254.2 206 62.1
Cc02_g05470 Coffea canephora HOM05D006829 ORTHO05D008742 1.9e-65 253.1 165 70.9
Thecc.10G183200 Theobroma cacao HOM05D006829 ORTHO05D008742 1.9e-65 253.1 204 61.3
Sc14g0005620 Simmondsia chinensis HOM05D006829 ORTHO05D008742 3.2e-65 252.3 202 64.9
Ah.10g026720 Amaranthus hybridus HOM05D006829 ORTHO05D008742 4.2e-65 251.9 162 72.8
MD01G1164900 Malus domestica HOM05D006829 ORTHO05D008742 5.5e-65 251.5 209 60.8
CiPaw.01G305500 Carya illinoinensis HOM05D006829 ORTHO05D008742 1.2e-64 250.4 167 73.1
Hund15829 Selenicereus undatus HOM05D006829 ORTHO05D008742 1.2e-64 250.4 207 61.4
THA.LOC104824240 Tarenaya hassleriana HOM05D006829 ORTHO05D008742 1.2e-64 250.4 206 64.6
AT3G56330 Arabidopsis thaliana HOM05D006829 ORTHO05D008742 2.7e-64 249.2 209 60.8
Cpa.g.sc19.69 Carica papaya HOM05D006829 ORTHO05D008742 2.7e-64 249.2 200 59.5
FvH4_7g25740 Fragaria vesca HOM05D006829 ORTHO05D008742 2.7e-64 249.2 202 63.9
FAN06G1082 Fragaria x ananassa HOM05D006829 ORTHO05D008742 2.7e-64 249.2 202 63.9
Actinidia33875 Actinidia chinensis HOM05D006829 ORTHO05D008742 4.6e-64 248.4 208 62.0
DCAR_014590 Daucus carota HOM05D006829 ORTHO05D008742 4.6e-64 248.4 173 69.9
HanXRQChr07g0203671 Helianthus annuus HOM05D006829 ORTHO05D008742 6.0e-64 248.1 202 63.4
FAN01G1374 Fragaria x ananassa HOM05D006829 ORTHO05D008742 7.9e-64 247.7 200 63.5
Potri.013G093500 Populus trichocarpa HOM05D006829 ORTHO05D008742 2.3e-63 246.1 203 61.1
MD01G1165000 Malus domestica HOM05D006829 ORTHO05D008742 3.0e-63 245.7 166 71.1
Thhalv10005995m.g Eutrema salsugineum HOM05D006829 ORTHO05D008742 3.9e-63 245.4 202 60.9
Sp5g06170 Schrenkiella parvula HOM05D006829 ORTHO05D008742 3.9e-63 245.4 207 60.4
Aa31LG10G11220 Aethionema arabicum HOM05D006829 ORTHO05D008742 5.1e-63 245.0 206 60.7
FAN03G2028 Fragaria x ananassa HOM05D006829 ORTHO05D008742 5.1e-63 245.0 200 63.0
Sabra13G0080500 Salix brachista HOM05D006829 ORTHO05D008742 5.1e-63 245.0 204 60.8
AL5G37660 Arabidopsis lyrata HOM05D006829 ORTHO05D008742 6.7e-63 244.6 204 60.3
C08p31650 Brassica napus HOM05D006829 ORTHO05D008742 1.1e-62 243.8 205 61.5
BolC8t50786H Brassica oleracea HOM05D006829 ORTHO05D008742 1.1e-62 243.8 205 61.5
Carub.0005s2311 Capsella rubella HOM05D006829 ORTHO05D008742 1.1e-62 243.8 210 59.5
EL10Ac2g02623 Beta vulgaris HOM05D006829 ORTHO05D008742 2.5e-62 242.7 162 69.8
PGR142G2558 Punica granatum HOM05D006829 ORTHO05D008742 2.5e-62 242.7 164 73.8
Aqoxy4G02381_Aqoxy4G02382 Aquilegia oxysepala HOM05D006829 ORTHO05D008742 3.3e-62 242.3 166 68.1
Sed0019807 Sechium edule HOM05D006829 ORTHO05D008742 5.7e-62 241.5 166 68.7
FAN10G0089 Fragaria x ananassa HOM05D006829 ORTHO05D008742 7.4e-62 241.1 165 70.9
FAN10G3521 Fragaria x ananassa HOM05D006829 ORTHO05D008742 7.4e-62 241.1 165 70.9
RcHm_v2.0_Chr1g0371991 Rosa chinensis HOM05D006829 ORTHO05D008742 7.4e-62 241.1 212 60.4
vmacro06881 Vaccinium macrocarpon HOM05D006829 ORTHO05D008742 7.4e-62 241.1 243 58.0
A09p49290 Brassica napus HOM05D006829 ORTHO05D008742 1.3e-61 240.4 205 61.0
BraA09t40382Z Brassica rapa HOM05D006829 ORTHO05D008742 1.3e-61 240.4 205 61.0
CARHR166480 Cardamine hirsuta HOM05D006829 ORTHO05D008742 2.1e-61 239.6 211 57.8
Ciclev10031828m.g Citrus clementina HOM05D006829 ORTHO05D008742 3.7e-61 238.8 206 56.3
PSO017G4996 Papaver somniferum HOM05D006829 ORTHO05D008742 3.7e-61 238.8 167 69.5
Lsat_1_v5_gn_2_125021 Lactuca sativa HOM05D006829 ORTHO05D008742 4.8e-61 238.4 206 60.2
arahy.Tifrunner.gnm1.ann1.1M00W9 Arachis hypogaea HOM05D006829 ORTHO05D008742 6.3e-61 238.0 166 68.7
arahy.Tifrunner.gnm1.ann1.ST33QA Arachis hypogaea HOM05D006829 ORTHO05D008742 6.3e-61 238.0 166 68.7
AUR62030629 Chenopodium quinoa HOM05D006829 ORTHO05D008742 1.8e-60 236.5 162 66.7
Migut.F00600 Erythranthe guttata HOM05D006829 ORTHO05D008742 1.8e-60 236.5 166 67.5
AUR62024915 Chenopodium quinoa HOM05D006829 ORTHO05D008742 5.3e-60 235.0 162 66.0
Atru.chr12.167 Acer truncatum HOM05D006829 ORTHO05D008742 6.9e-60 234.6 160 68.8
ECA238G4606 Erigeron canadensis HOM05D000486 ORTHO05D008742 9.0e-60 234.2 167 67.1
Oeu004091.1 Olea europaea HOM05D006829 ORTHO05D008742 9.0e-60 234.2 158 68.4
Oeu004092.1 Olea europaea HOM05D006829 ORTHO05D008742 9.0e-60 234.2 158 68.4
PGSC0003DMG401016632 Solanum tuberosum HOM05D006829 ORTHO05D008742 1.5e-59 233.4 166 66.3
Rhsim03G0151300 Rhododendron simsii HOM05D006829 ORTHO05D008742 2.0e-59 233.0 255 52.2
Sopen06g015460 Solanum pennellii HOM05D006829 ORTHO05D008742 5.9e-59 231.5 166 66.3
Phvul.009G142000 Phaseolus vulgaris HOM05D006829 ORTHO05D008742 1.7e-58 229.9 163 67.5
Ca_16876_v3 Cicer arietinum L. HOM05D006829 ORTHO05D008742 2.2e-58 229.6 159 67.3
CDE06G0932 Ceratophyllum demersum HOM05D006829 ORTHO05D008742 3.8e-58 228.8 158 67.7
Psat5g068000 Pisum sativum HOM05D006829 ORTHO05D008742 1.4e-57 226.9 159 67.9
Glyma.06G144200 Glycine max HOM05D006829 ORTHO05D008742 5.5e-57 224.9 163 66.3
VMungo1309G2158 Vigna mungo HOM05D006829 ORTHO05D008742 7.2e-57 224.6 157 68.2
Nitab4.5_0004599g0030 Nicotiana tabacum HOM05D006829 ORTHO05D008742 2.1e-56 223.0 167 63.5
MBI03_g27103_MAGBIO Magnolia biondii HOM05D006829 ORTHO05D008742 4.6e-56 221.9 160 68.8
Nitab4.5_0001743g0020 Nicotiana tabacum HOM05D006829 ORTHO05D008742 4.6e-56 221.9 166 64.5
Eucgr.G03129 Eucalyptus grandis HOM05D006829 ORTHO05D008742 7.9e-56 221.1 168 66.7
Lalb_Chr11g0067871 Lupinus albus HOM05D006829 ORTHO05D008742 1.0e-55 220.7 161 65.8
TPR.G16111 Trifolium pratense HOM05D006829 ORTHO05D008742 5.1e-55 218.4 159 64.8
Lj1g0006364 Lotus japonicus HOM05D006829 ORTHO05D008742 1.1e-54 217.2 158 63.9
Medtr3g094190 Medicago truncatula HOM05D006829 ORTHO05D008742 1.5e-54 216.9 157 65.0
HPP92_013832 Vanilla planifolia HOM05D006829 ORTHO05D008742 3.3e-54 215.7 161 66.5
Dinv21837 Davidia involucrata HOM05D006829 ORTHO05D008742 2.2e-50 203.0 115 81.7
COL.COLO4_19445 Corchorus olitorius HOM05D006829 ORTHO05D008742 3.9e-47 192.2 148 62.8
GSVIVG01032697001 Vitis vinifera HOM05D006829 ORTHO05D008742 2.0e-46 189.9 114 77.2
ATR1127G148 Amborella trichopoda HOM05D006829 ORTHO05D008742 1.4e-44 183.7 279 38.0
Pp3c22_6520 Physcomitrium patens HOM05D006829 ORTHO05D008742 6.5e-42 174.9 182 48.9
unitig_37.g12471 Utricularia gibba HOM05D006829 ORTHO05D002567 1.4e-39 167.2 149 55.7
Os05g0324200 Oryza sativa ssp. japonica HOM05D006829 ORTHO05D008742 3.0e-39 166.0 159 51.6
Zm00001eb285100 Zea mays HOM05D006829 ORTHO05D008742 5.2e-39 165.2 166 49.4
SMO246G0016 Selaginella moellendorffii HOM05D006829 ORTHO05D008742 2.2e-37 159.8 156 52.6
Mapoly0122s0019 Marchantia polymorpha HOM05D006829 ORTHO05D008742 3.7e-37 159.1 165 44.8
SEGI_12327 Sequoiadendron giganteum HOM05D006829 ORTHO05D008742 1.8e-31 140.2 162 44.4
CBR_g8316 Chara braunii HOM05D000601 ORTHO05D000407 6.7e-31 138.3 206 37.4
TAR381G0177 Trochodendron aralioides HOM05D006829 ORTHO05D008742 9.7e-30 134.4 86 73.3
CAN.G24.7 Capsicum annuum HOM05D006829 ORTHO05D008742 6.5e-26 121.7 116 54.3
MCO02G392 Micromonas commoda HOM05D006829 ORTHO05D008742 3.4e-22 109.4 172 37.8
PRCOL_00004084 Prasinoderma coloniale HOM05D006829 ORTHO05D008742 1.4e-20 104.0 193 36.8
MD07G1232400 Malus domestica HOM05D006829 ORTHO05D008742 3.2e-17 92.8 56 75.0
Lj4g0017249 Lotus japonicus HOM05D006829 ORTHO05D008742 1.2e-16 90.9 56 71.4
Cre10.g428100 Chlamydomonas reinhardtii HOM05D006829 ORTHO05D008742 2.3e-15 86.7 69 52.2
PRCOL_00005295 Prasinoderma coloniale HOM05D003582 ORTHO05D004789 1.5e-06 57.4 124 29.8
Pp3c16_12880 Physcomitrium patens HOM05D003582 ORTHO05D004789 9.8e-06 54.7 114 35.1


User provided reference genes

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