Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 0.0e+00 1247.3 633 100.0
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.5e-251 872.8 643 69.7
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 1.9e-241 839.3 642 67.8
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 5.3e-236 821.2 623 68.7
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 2.1e-232 809.3 581 73.7
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 1.0e-223 780.4 635 65.7
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 3.0e-223 778.9 656 64.5
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 1.5e-222 776.5 649 65.5
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 1.1e-220 770.4 646 63.2
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 1.2e-219 766.9 646 61.0
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 3.5e-219 765.4 618 64.7
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 1.9e-217 759.6 644 62.4
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 7.2e-217 757.7 641 62.2
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 9.5e-217 757.3 603 64.8
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 4.4e-214 748.4 642 60.3
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 5.7e-214 748.0 652 64.1
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 7.5e-214 747.7 643 63.3
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.1e-212 743.8 637 60.6
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 7.0e-212 741.1 637 60.6
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 1.0e-210 737.3 634 62.5
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 1.3e-210 736.9 647 62.8
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 3.0e-210 735.7 637 60.8
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 3.9e-210 735.3 622 63.5
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 3.9e-210 735.3 638 59.9
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 7.3e-209 731.1 642 60.1
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 8.0e-208 727.6 620 62.9
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 1.4e-207 726.9 646 61.1
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 8.9e-207 724.2 641 62.6
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 1.5e-206 723.4 645 60.2
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 5.8e-206 721.5 628 59.6
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 3.7e-205 718.8 636 59.7
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 2.4e-204 716.1 640 58.9
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.2e-203 713.8 676 57.1
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 1.6e-203 713.4 643 61.6
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 2.0e-203 713.0 647 60.6
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 2.0e-203 713.0 621 59.4
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 3.5e-203 712.2 643 58.9
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 1.0e-202 710.7 639 58.2
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 1.7e-202 709.9 499 73.7
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 1.7e-202 709.9 636 58.5
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 2.3e-202 709.5 622 60.0
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 2.3e-202 709.5 616 61.7
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 1.1e-201 707.2 627 59.8
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 5.6e-201 704.9 640 57.7
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.6e-200 703.4 640 60.2
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 8.1e-200 701.0 643 59.6
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 8.1e-200 701.0 616 61.0
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 3.1e-199 699.1 620 61.5
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 1.2e-198 697.2 633 61.0
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 2.6e-198 696.0 624 59.9
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 3.4e-198 695.7 617 60.3
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 7.5e-198 694.5 643 58.9
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 7.5e-198 694.5 624 60.1
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 9.8e-198 694.1 640 57.5
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 8.3e-197 691.0 643 60.0
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 1.9e-196 689.9 643 57.1
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 2.1e-195 686.4 640 58.1
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 3.5e-195 685.6 695 55.0
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 4.6e-195 685.3 640 57.8
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 3.9e-194 682.2 584 61.8
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 4.7e-192 675.2 640 56.1
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 1.1e-191 674.1 653 56.8
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 2.3e-191 672.9 665 55.8
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 3.1e-191 672.5 617 60.0
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.1e-191 672.5 652 57.1
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 4.9e-189 665.2 643 55.5
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 4.9e-189 665.2 638 56.0
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 5.4e-188 661.8 591 60.7
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 9.2e-188 661.0 632 58.7
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 6.0e-187 658.3 606 59.4
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 7.8e-187 657.9 626 55.0
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 1.0e-186 657.5 643 54.1
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 1.1e-185 654.1 626 56.7
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.1e-183 646.0 621 55.7
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 2.0e-182 643.3 648 54.6
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 1.7e-181 640.2 613 54.0
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 4.9e-181 638.6 654 55.0
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 7.1e-180 634.8 578 58.5
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 5.1e-178 628.6 607 57.8
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 8.1e-176 621.3 634 53.6
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.1e-175 619.4 630 54.8
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 2.0e-174 616.7 583 58.7
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 4.4e-174 615.5 494 63.6
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 3.8e-173 612.5 593 57.8
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 8.4e-173 611.3 634 54.3
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 3.2e-172 609.4 564 57.6
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.6e-171 607.1 707 49.8
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 2.7e-171 606.3 643 51.5
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 1.0e-170 604.4 647 52.4
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 2.3e-170 603.2 641 54.4
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 2.3e-170 603.2 631 52.9
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 5.1e-170 602.1 650 51.1
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 8.7e-170 601.3 640 52.3
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 1.5e-169 600.5 653 50.2
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 1.9e-169 600.1 636 51.7
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 1.1e-167 594.3 555 60.0
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 1.1e-167 594.3 625 53.1
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.8e-167 593.6 564 57.1
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 2.4e-167 593.2 662 50.2
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 3.1e-167 592.8 632 51.3
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 4.0e-167 592.4 636 51.4
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.3e-165 587.4 631 52.3
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 2.7e-163 579.7 678 49.4
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 3.5e-163 579.3 615 52.0
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 4.6e-163 578.9 612 50.3
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 4.6e-163 578.9 612 50.3
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 6.0e-163 578.6 638 51.1
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 7.9e-163 578.2 612 50.3
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 1.8e-162 577.0 615 49.9
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 1.8e-162 577.0 615 49.9
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 1.5e-161 573.9 634 51.3
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 3.3e-161 572.8 587 52.6
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 6.2e-160 568.5 544 56.2
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 4.5e-158 562.4 512 58.0
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 2.9e-157 559.7 688 47.8
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 1.4e-156 557.4 491 57.6
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 5.5e-156 555.4 526 58.2
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 3.9e-154 549.3 611 49.4
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 9.6e-153 544.7 520 55.0
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 1.4e-151 540.8 479 59.7
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 9.0e-151 538.1 528 56.4
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 3.8e-149 532.7 525 55.6
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 2.5e-145 520.0 593 48.7
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 8.2e-144 515.0 645 50.5
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 3.1e-143 513.1 620 49.0
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 1.4e-135 487.6 484 55.6
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.8e-135 487.3 422 59.5
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 8.8e-122 441.8 639 44.4
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.7e-120 437.6 492 50.4
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 1.7e-120 437.6 492 50.4
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 4.1e-119 433.0 629 41.7
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 9.1e-119 431.8 465 51.0
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 4.2e-116 422.9 553 45.6
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 1.8e-114 417.5 620 41.1
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 3.5e-110 403.3 541 43.6
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 6.6e-101 372.5 374 52.9
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 3.6e-99 366.7 524 42.7
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 3.9e-77 293.5 549 36.6
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 1.5e-73 281.6 505 37.0
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.2e-65 255.4 279 51.3
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 5.6e-60 236.5 351 43.0
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 5.8e-49 199.9 186 54.3
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 1.1e-47 195.7 195 48.2
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 4.6e-46 190.3 131 68.7
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 1.0e-24 119.4 158 38.0
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 1.7e-24 118.6 156 50.0
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 5.0e-24 117.1 64 84.4
Oeu025172.2 Olea europaea HOM05D004604 ORTHO05D005744 8.2e-19 99.8 119 49.6
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-08 65.9 39 71.8
CDE04G1491 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 6.5e-08 63.5 49 53.1
QL01p024866 Quercus lobata HOM05D004604 ORTHO05D005744 1.1e-07 62.8 72 52.8
QL04p091051 Quercus lobata HOM05D004604 ORTHO05D013998 1.5e-07 62.4 72 51.4
SEGI_38081 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.2e-07 60.8 60 45.0


User provided reference genes

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