Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 1.1e-168 596.7 318 100.0
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 8.5e-158 560.5 318 94.3
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 5.6e-141 504.6 318 85.5
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 5.6e-141 504.6 318 85.5
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 2.7e-135 485.7 318 82.1
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 1.0e-134 483.8 318 81.8
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 9.5e-133 477.2 318 80.5
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.2e-132 476.9 318 79.9
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 7.5e-130 467.6 319 79.3
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 1.3e-129 466.8 320 80.0
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 1.4e-128 463.4 318 78.0
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.9e-128 463.0 318 77.7
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.4e-128 462.6 318 77.7
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 3.2e-128 462.2 318 77.4
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.2e-128 462.2 318 78.3
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 7.0e-128 461.1 318 78.0
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 7.0e-128 461.1 319 77.1
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 9.2e-128 460.7 318 77.4
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 9.2e-128 460.7 362 71.5
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 9.2e-128 460.7 318 77.4
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.6e-127 459.9 318 78.0
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 4.6e-127 458.4 318 78.3
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 4.6e-127 458.4 318 76.7
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 4.6e-127 458.4 318 77.7
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.0e-126 457.2 318 78.6
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 1.3e-126 456.8 318 77.4
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 1.3e-126 456.8 318 78.6
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 1.7e-126 456.4 318 77.4
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 2.3e-126 456.1 318 78.3
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 6.6e-126 454.5 318 77.0
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 6.6e-126 454.5 318 77.0
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 6.6e-126 454.5 318 78.6
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 8.6e-126 454.1 256 93.4
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 8.6e-126 454.1 317 77.3
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 3.3e-125 452.2 318 77.0
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 7.3e-125 451.1 318 77.0
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 1.6e-124 449.9 318 77.4
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 2.1e-124 449.5 318 76.1
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 2.8e-124 449.1 318 77.4
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 2.8e-124 449.1 318 77.0
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 4.7e-124 448.4 318 77.0
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 8.1e-124 447.6 318 76.4
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 2.3e-123 446.0 318 75.8
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 2.3e-123 446.0 318 78.0
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 3.1e-123 445.7 318 77.0
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 5.2e-123 444.9 318 76.1
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 5.2e-123 444.9 318 76.4
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 1.5e-122 443.4 318 76.4
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.5e-122 443.4 318 76.4
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 2.6e-122 442.6 318 76.7
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 7.5e-122 441.0 318 75.8
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 9.9e-122 440.7 318 75.8
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 1.3e-121 440.3 318 75.5
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 2.9e-121 439.1 318 75.5
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 2.9e-121 439.1 318 76.7
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 4.9e-121 438.3 318 75.5
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 6.4e-121 438.0 318 74.2
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 1.1e-120 437.2 315 74.6
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 1.1e-120 437.2 318 75.5
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 1.4e-120 436.8 318 75.2
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 1.9e-120 436.4 319 75.9
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 3.2e-120 435.6 318 74.2
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 4.1e-120 435.3 318 75.2
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 4.1e-120 435.3 318 74.5
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 2.7e-119 432.6 318 75.5
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 3.5e-119 432.2 318 74.2
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 4.6e-119 431.8 318 73.9
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 4.6e-119 431.8 317 73.5
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 7.8e-119 431.0 318 74.2
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 3.3e-117 425.6 318 73.6
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 2.1e-116 422.9 318 73.3
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 2.8e-116 422.5 318 72.3
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 6.2e-116 421.4 318 73.0
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 2.4e-115 419.5 319 71.8
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.0e-115 418.7 318 69.8
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 5.2e-115 418.3 318 71.4
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 5.2e-115 418.3 318 71.4
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 6.8e-115 417.9 242 90.9
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 1.2e-114 417.2 318 72.0
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 1.2e-114 417.2 318 72.0
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.6e-114 416.0 353 66.9
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 2.6e-114 416.0 318 71.7
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 1.3e-113 413.7 319 71.2
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 1.7e-113 413.3 318 72.3
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 2.9e-113 412.5 318 71.1
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 5.4e-112 408.3 318 68.6
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 9.2e-112 407.5 318 71.1
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 1.6e-111 406.8 319 70.2
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 1.6e-111 406.8 319 69.9
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 2.7e-111 406.0 318 70.1
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 6.0e-111 404.8 321 69.5
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.7e-110 403.3 319 72.4
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.3e-110 402.9 281 76.9
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 5.1e-110 401.7 318 70.8
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.5e-109 400.2 319 69.6
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 3.3e-109 399.1 286 76.9
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 3.3e-109 399.1 321 69.5
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 4.3e-109 398.7 319 68.0
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 1.2e-108 397.1 299 73.6
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 6.9e-107 391.3 280 76.4
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 1.5e-106 390.2 318 67.3
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 2.6e-106 389.4 318 67.3
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 3.4e-106 389.0 302 70.2
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 7.6e-106 387.9 302 69.9
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 2.9e-105 386.0 287 74.2
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 3.8e-105 385.6 302 69.5
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 1.9e-104 383.3 305 68.9
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 2.1e-103 379.8 320 67.5
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 1.3e-102 377.1 270 75.6
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 8.7e-102 374.4 270 74.4
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 6.2e-100 368.2 294 68.4
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 6.2e-100 368.2 294 68.0
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 1.2e-98 364.0 264 75.4
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 2.4e-96 356.3 318 67.0
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 3.5e-95 352.4 318 62.6
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 3.5e-95 352.4 320 61.9
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 4.6e-95 352.1 318 64.8
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.8e-91 340.1 318 62.3
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 2.4e-91 339.7 319 62.7
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.5e-90 337.0 270 66.7
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.4e-88 329.7 230 78.3
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 9.0e-83 311.2 318 56.9
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 3.0e-78 296.2 228 70.6
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.1e-75 287.7 391 49.6
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 3.8e-73 279.3 322 50.9
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 1.5e-69 267.3 748 32.1
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 7.7e-66 255.0 313 50.5
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.7e-65 253.8 330 45.5
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 9.7e-61 238.0 181 76.8
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 3.8e-57 226.1 300 46.3
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 3.3e-53 213.0 192 64.6
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.8e-51 207.2 150 79.3
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 2.3e-46 190.3 160 70.0
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 8.8e-46 188.3 276 48.9
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 1.2e-45 188.0 121 87.6
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 1.1e-40 171.4 120 82.5
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 2.3e-38 163.7 154 63.0
HPP92_004405 Vanilla planifolia HOM05D004764 ORTHO05D005580 2.8e-36 156.8 110 69.1
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 4.8e-36 156.0 316 34.8
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 9.1e-35 151.8 275 42.9
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 9.1e-35 151.8 252 42.5
Eucgr.L03566 Eucalyptus grandis HOM05D004764 ORTHO05D005580 6.8e-30 135.6 91 75.8
vmacro10074 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 2.0e-29 134.0 110 67.3
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 8.3e-28 128.6 159 56.6
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.0e-25 121.7 111 65.8
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 1.3e-25 121.3 137 58.4
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 1.7e-25 120.9 93 68.8
SEGI_41058 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 2.1e-23 114.0 89 65.2
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 2.6e-21 107.1 99 60.6
Actinidia13908 Actinidia chinensis HOM05D004764 ORTHO05D005580 4.6e-18 96.3 67 74.6
Cre17.g711450 Chlamydomonas reinhardtii HOM05D004764 ORTHO05D005580 8.0e-15 85.5 398 25.6
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.3e-14 84.0 57 77.2
Sc11g0007520 Simmondsia chinensis HOM05D004764 ORTHO05D005580 7.0e-11 72.4 90 50.0
HanXRQChr16g0528961 Helianthus annuus HOM05D004764 ORTHO05D005580 8.1e-07 58.9 90 42.2


User provided reference genes

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